Experiment: SMN_rich_anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0246 and Rru_AR0010 are separated by 257 nucleotides Rru_AR0010 and Rru_A0247 are separated by 319 nucleotides Rru_A0247 and Rru_A0248 are separated by 56 nucleotides
Rru_A0246: Rru_A0246 - Ppx/GppA phosphatase (NCBI), at 305,449 to 306,648
_A0246
Rru_AR0010: Rru_AR0010 - tRNA-Gln (NCBI), at 306,906 to 306,979
_AR0010
Rru_A0247: Rru_A0247 - Periplasmic binding protein/LacI transcriptional regulator (NCBI), at 307,299 to 308,303
_A0247
Rru_A0248: Rru_A0248 - inner-membrane translocator (NCBI), at 308,360 to 309,376
_A0248
Position (kb) 307
308
309 Strain fitness (log2 ratio) -2
-1
0
1 at 306.527 kb on + strand, within Rru_A0246 at 306.528 kb on - strand, within Rru_A0246 at 306.528 kb on - strand, within Rru_A0246 at 306.528 kb on - strand, within Rru_A0246 at 306.670 kb on + strand at 306.752 kb on + strand at 306.752 kb on + strand at 306.789 kb on + strand at 306.790 kb on - strand at 306.790 kb on - strand at 306.862 kb on + strand at 306.862 kb on + strand at 306.862 kb on + strand at 306.866 kb on + strand at 306.866 kb on + strand at 306.866 kb on + strand at 306.885 kb on + strand at 306.885 kb on + strand at 306.885 kb on + strand at 307.026 kb on + strand at 307.026 kb on + strand at 307.077 kb on - strand at 307.077 kb on - strand at 307.105 kb on + strand at 307.194 kb on + strand at 307.301 kb on - strand at 307.363 kb on + strand at 307.363 kb on + strand at 307.405 kb on + strand, within Rru_A0247 at 307.405 kb on + strand, within Rru_A0247 at 307.405 kb on + strand, within Rru_A0247 at 307.406 kb on - strand, within Rru_A0247 at 307.435 kb on + strand, within Rru_A0247 at 307.436 kb on - strand, within Rru_A0247 at 307.436 kb on - strand, within Rru_A0247 at 307.436 kb on - strand, within Rru_A0247 at 308.017 kb on + strand, within Rru_A0247 at 308.017 kb on + strand, within Rru_A0247 at 308.018 kb on - strand, within Rru_A0247 at 308.018 kb on - strand, within Rru_A0247 at 308.098 kb on + strand, within Rru_A0247 at 308.098 kb on + strand, within Rru_A0247 at 308.111 kb on - strand, within Rru_A0247 at 308.111 kb on - strand, within Rru_A0247 at 308.111 kb on - strand, within Rru_A0247 at 308.162 kb on - strand, within Rru_A0247 at 308.162 kb on - strand, within Rru_A0247 at 308.192 kb on + strand, within Rru_A0247 at 308.192 kb on + strand, within Rru_A0247 at 308.193 kb on - strand, within Rru_A0247 at 308.193 kb on - strand, within Rru_A0247 at 308.193 kb on - strand, within Rru_A0247 at 308.193 kb on - strand, within Rru_A0247 at 308.200 kb on + strand, within Rru_A0247 at 308.200 kb on + strand, within Rru_A0247 at 308.200 kb on + strand, within Rru_A0247 at 308.201 kb on - strand, within Rru_A0247 at 308.286 kb on - strand at 308.334 kb on - strand at 308.434 kb on - strand at 308.434 kb on - strand at 308.577 kb on + strand, within Rru_A0248 at 308.577 kb on + strand, within Rru_A0248 at 308.577 kb on + strand, within Rru_A0248 at 308.578 kb on - strand, within Rru_A0248 at 308.578 kb on - strand, within Rru_A0248 at 308.664 kb on + strand, within Rru_A0248 at 308.664 kb on + strand, within Rru_A0248 at 308.664 kb on + strand, within Rru_A0248 at 308.664 kb on + strand, within Rru_A0248 at 308.664 kb on + strand, within Rru_A0248 at 308.664 kb on + strand, within Rru_A0248 at 308.665 kb on - strand, within Rru_A0248 at 308.665 kb on - strand, within Rru_A0248 at 308.736 kb on + strand, within Rru_A0248 at 308.736 kb on + strand, within Rru_A0248 at 308.736 kb on + strand, within Rru_A0248 at 308.736 kb on + strand, within Rru_A0248 at 308.737 kb on - strand, within Rru_A0248 at 308.737 kb on - strand, within Rru_A0248 at 308.742 kb on + strand, within Rru_A0248 at 308.762 kb on - strand, within Rru_A0248 at 308.762 kb on - strand, within Rru_A0248 at 309.043 kb on - strand, within Rru_A0248 at 309.195 kb on - strand, within Rru_A0248 at 309.221 kb on - strand, within Rru_A0248
Per-strain Table
Position Strand Gene LocusTag Fraction SMN_rich_anaerobic remove 306,527 + Rru_A0246 0.90 -1.5 306,528 - Rru_A0246 0.90 +0.0 306,528 - Rru_A0246 0.90 -0.9 306,528 - Rru_A0246 0.90 +0.0 306,670 + +0.0 306,752 + -1.3 306,752 + +0.0 306,789 + +0.0 306,790 - -1.2 306,790 - +0.0 306,862 + -1.0 306,862 + -1.0 306,862 + +0.0 306,866 + -1.8 306,866 + +0.0 306,866 + -1.0 306,885 + +0.0 306,885 + +0.0 306,885 + -1.3 307,026 + -1.1 307,026 + +0.0 307,077 - -1.4 307,077 - +0.0 307,105 + +0.0 307,194 + -1.0 307,301 - +0.0 307,363 + -1.0 307,363 + -1.3 307,405 + Rru_A0247 0.11 +0.0 307,405 + Rru_A0247 0.11 -1.0 307,405 + Rru_A0247 0.11 +0.0 307,406 - Rru_A0247 0.11 +0.0 307,435 + Rru_A0247 0.14 -1.2 307,436 - Rru_A0247 0.14 +0.0 307,436 - Rru_A0247 0.14 +0.0 307,436 - Rru_A0247 0.14 -1.4 308,017 + Rru_A0247 0.71 +0.0 308,017 + Rru_A0247 0.71 -1.4 308,018 - Rru_A0247 0.72 +0.0 308,018 - Rru_A0247 0.72 +0.0 308,098 + Rru_A0247 0.80 +0.0 308,098 + Rru_A0247 0.80 +0.0 308,111 - Rru_A0247 0.81 +0.0 308,111 - Rru_A0247 0.81 +0.0 308,111 - Rru_A0247 0.81 +0.0 308,162 - Rru_A0247 0.86 +0.0 308,162 - Rru_A0247 0.86 +0.0 308,192 + Rru_A0247 0.89 +0.0 308,192 + Rru_A0247 0.89 +0.0 308,193 - Rru_A0247 0.89 +0.0 308,193 - Rru_A0247 0.89 +0.0 308,193 - Rru_A0247 0.89 -1.2 308,193 - Rru_A0247 0.89 +0.0 308,200 + Rru_A0247 0.90 +0.0 308,200 + Rru_A0247 0.90 +0.0 308,200 + Rru_A0247 0.90 -1.2 308,201 - Rru_A0247 0.90 +0.0 308,286 - -0.9 308,334 - +0.0 308,434 - +0.0 308,434 - +0.0 308,577 + Rru_A0248 0.21 +0.0 308,577 + Rru_A0248 0.21 +0.0 308,577 + Rru_A0248 0.21 +0.0 308,578 - Rru_A0248 0.21 -1.0 308,578 - Rru_A0248 0.21 +0.0 308,664 + Rru_A0248 0.30 +0.0 308,664 + Rru_A0248 0.30 -0.9 308,664 + Rru_A0248 0.30 +0.0 308,664 + Rru_A0248 0.30 +0.0 308,664 + Rru_A0248 0.30 -1.0 308,664 + Rru_A0248 0.30 +0.0 308,665 - Rru_A0248 0.30 -1.0 308,665 - Rru_A0248 0.30 -1.1 308,736 + Rru_A0248 0.37 +0.0 308,736 + Rru_A0248 0.37 +0.0 308,736 + Rru_A0248 0.37 +0.0 308,736 + Rru_A0248 0.37 -2.1 308,737 - Rru_A0248 0.37 -1.2 308,737 - Rru_A0248 0.37 -1.0 308,742 + Rru_A0248 0.38 +0.0 308,762 - Rru_A0248 0.40 +0.0 308,762 - Rru_A0248 0.40 +0.0 309,043 - Rru_A0248 0.67 -0.9 309,195 - Rru_A0248 0.82 +0.0 309,221 - Rru_A0248 0.85 +0.0
Or see this region's nucleotide sequence