Experiment: SMN_rich_anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0244 and Rru_A0245 are separated by 166 nucleotides Rru_A0245 and Rru_A0246 overlap by 4 nucleotides Rru_A0246 and Rru_AR0010 are separated by 257 nucleotides Rru_AR0010 and Rru_A0247 are separated by 319 nucleotides
Rru_A0244: Rru_A0244 - IMP dehydrogenase (NCBI), at 303,031 to 304,494
_A0244
Rru_A0245: Rru_A0245 - Ribosomal RNA methyltransferase RrmJ/FtsJ (NCBI), at 304,661 to 305,452
_A0245
Rru_A0246: Rru_A0246 - Ppx/GppA phosphatase (NCBI), at 305,449 to 306,648
_A0246
Rru_AR0010: Rru_AR0010 - tRNA-Gln (NCBI), at 306,906 to 306,979
_AR0010
Rru_A0247: Rru_A0247 - Periplasmic binding protein/LacI transcriptional regulator (NCBI), at 307,299 to 308,303
_A0247
Position (kb) 305
306
307 Strain fitness (log2 ratio) -2
-1
0
1 at 304.512 kb on - strand at 304.662 kb on + strand at 304.663 kb on - strand at 304.663 kb on - strand at 305.520 kb on + strand at 305.521 kb on - strand at 305.521 kb on - strand at 305.521 kb on - strand at 305.718 kb on + strand, within Rru_A0246 at 305.718 kb on + strand, within Rru_A0246 at 305.718 kb on + strand, within Rru_A0246 at 305.719 kb on - strand, within Rru_A0246 at 305.751 kb on + strand, within Rru_A0246 at 305.751 kb on + strand, within Rru_A0246 at 306.087 kb on + strand, within Rru_A0246 at 306.087 kb on + strand, within Rru_A0246 at 306.087 kb on + strand, within Rru_A0246 at 306.088 kb on - strand, within Rru_A0246 at 306.088 kb on - strand, within Rru_A0246 at 306.273 kb on + strand, within Rru_A0246 at 306.527 kb on + strand, within Rru_A0246 at 306.528 kb on - strand, within Rru_A0246 at 306.528 kb on - strand, within Rru_A0246 at 306.528 kb on - strand, within Rru_A0246 at 306.670 kb on + strand at 306.752 kb on + strand at 306.752 kb on + strand at 306.789 kb on + strand at 306.790 kb on - strand at 306.790 kb on - strand at 306.862 kb on + strand at 306.862 kb on + strand at 306.862 kb on + strand at 306.866 kb on + strand at 306.866 kb on + strand at 306.866 kb on + strand at 306.885 kb on + strand at 306.885 kb on + strand at 306.885 kb on + strand at 307.026 kb on + strand at 307.026 kb on + strand at 307.077 kb on - strand at 307.077 kb on - strand at 307.105 kb on + strand at 307.194 kb on + strand at 307.301 kb on - strand at 307.363 kb on + strand at 307.363 kb on + strand at 307.405 kb on + strand, within Rru_A0247 at 307.405 kb on + strand, within Rru_A0247 at 307.405 kb on + strand, within Rru_A0247 at 307.406 kb on - strand, within Rru_A0247 at 307.435 kb on + strand, within Rru_A0247 at 307.436 kb on - strand, within Rru_A0247 at 307.436 kb on - strand, within Rru_A0247 at 307.436 kb on - strand, within Rru_A0247
Per-strain Table
Position Strand Gene LocusTag Fraction SMN_rich_anaerobic remove 304,512 - +0.0 304,662 + -1.0 304,663 - +0.0 304,663 - +0.0 305,520 + +0.0 305,521 - -1.0 305,521 - -1.3 305,521 - -0.2 305,718 + Rru_A0246 0.22 +0.0 305,718 + Rru_A0246 0.22 +0.0 305,718 + Rru_A0246 0.22 -1.4 305,719 - Rru_A0246 0.23 -1.2 305,751 + Rru_A0246 0.25 -1.0 305,751 + Rru_A0246 0.25 +0.0 306,087 + Rru_A0246 0.53 +0.0 306,087 + Rru_A0246 0.53 +0.0 306,087 + Rru_A0246 0.53 -1.0 306,088 - Rru_A0246 0.53 -1.5 306,088 - Rru_A0246 0.53 -1.4 306,273 + Rru_A0246 0.69 -1.4 306,527 + Rru_A0246 0.90 -1.5 306,528 - Rru_A0246 0.90 +0.0 306,528 - Rru_A0246 0.90 -0.9 306,528 - Rru_A0246 0.90 +0.0 306,670 + +0.0 306,752 + -1.3 306,752 + +0.0 306,789 + +0.0 306,790 - -1.2 306,790 - +0.0 306,862 + -1.0 306,862 + -1.0 306,862 + +0.0 306,866 + -1.8 306,866 + +0.0 306,866 + -1.0 306,885 + +0.0 306,885 + +0.0 306,885 + -1.3 307,026 + -1.1 307,026 + +0.0 307,077 - -1.4 307,077 - +0.0 307,105 + +0.0 307,194 + -1.0 307,301 - +0.0 307,363 + -1.0 307,363 + -1.3 307,405 + Rru_A0247 0.11 +0.0 307,405 + Rru_A0247 0.11 -1.0 307,405 + Rru_A0247 0.11 +0.0 307,406 - Rru_A0247 0.11 +0.0 307,435 + Rru_A0247 0.14 -1.2 307,436 - Rru_A0247 0.14 +0.0 307,436 - Rru_A0247 0.14 +0.0 307,436 - Rru_A0247 0.14 -1.4
Or see this region's nucleotide sequence