Experiment: KB with Flavone 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4616 and Psyr_4617 overlap by 1 nucleotides Psyr_4617 and Psyr_4618 are separated by 177 nucleotides Psyr_4618 and Psyr_4619 overlap by 4 nucleotides
Psyr_4616: Psyr_4616 - Integrase, catalytic region, at 5,474,547 to 5,475,383
_4616
Psyr_4617: Psyr_4617 - ISPsy9, transposase OrfA, at 5,475,383 to 5,475,922
_4617
Psyr_4618: Psyr_4618 - regulatory protein, LuxR:Response regulator receiver, at 5,476,100 to 5,476,729
_4618
Psyr_4619: Psyr_4619 - multi-sensor signal transduction histidine kinase, at 5,476,726 to 5,478,738
_4619
Position (kb) 5475
5476 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5474.477 kb on + strand at 5474.477 kb on + strand at 5474.478 kb on - strand at 5474.478 kb on - strand at 5474.478 kb on - strand at 5474.478 kb on - strand at 5474.478 kb on - strand at 5474.478 kb on - strand at 5474.478 kb on - strand at 5476.055 kb on + strand at 5476.055 kb on + strand at 5476.055 kb on + strand at 5476.055 kb on + strand at 5476.055 kb on + strand at 5476.055 kb on + strand at 5476.126 kb on - strand at 5476.126 kb on - strand at 5476.126 kb on - strand at 5476.359 kb on + strand, within Psyr_4618 at 5476.360 kb on - strand, within Psyr_4618 at 5476.360 kb on - strand, within Psyr_4618 at 5476.423 kb on + strand, within Psyr_4618 at 5476.568 kb on - strand, within Psyr_4618 at 5476.764 kb on + strand at 5476.766 kb on + strand at 5476.766 kb on + strand at 5476.766 kb on + strand at 5476.766 kb on + strand at 5476.766 kb on + strand at 5476.767 kb on - strand at 5476.767 kb on - strand at 5476.767 kb on - strand at 5476.767 kb on - strand at 5476.767 kb on - strand at 5476.767 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Flavone 0.125 mg/ml remove 5,474,477 + -1.5 5,474,477 + +2.1 5,474,478 - -0.2 5,474,478 - +0.2 5,474,478 - +0.2 5,474,478 - -0.0 5,474,478 - +0.7 5,474,478 - -0.4 5,474,478 - +1.3 5,476,055 + +0.4 5,476,055 + -0.3 5,476,055 + +0.7 5,476,055 + -0.5 5,476,055 + +0.2 5,476,055 + -0.8 5,476,126 - +0.8 5,476,126 - +0.7 5,476,126 - +1.9 5,476,359 + Psyr_4618 0.41 -0.3 5,476,360 - Psyr_4618 0.41 -1.8 5,476,360 - Psyr_4618 0.41 -1.6 5,476,423 + Psyr_4618 0.51 -1.1 5,476,568 - Psyr_4618 0.74 -0.4 5,476,764 + -0.8 5,476,766 + -0.3 5,476,766 + -0.4 5,476,766 + +0.4 5,476,766 + -1.7 5,476,766 + +0.0 5,476,767 - +0.4 5,476,767 - +0.4 5,476,767 - -0.4 5,476,767 - +0.0 5,476,767 - +0.5 5,476,767 - -0.7
Or see this region's nucleotide sequence