Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3968

Experiment: KB with Flavone 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3966 and Psyr_3967 are separated by 62 nucleotidesPsyr_3967 and Psyr_3968 are separated by 1 nucleotidesPsyr_3968 and Psyr_3969 overlap by 8 nucleotides Psyr_3966: Psyr_3966 - Uncharacterized protein UPF0065, at 4,713,938 to 4,714,915 _3966 Psyr_3967: Psyr_3967 - membrane protein TctB, putative, at 4,714,978 to 4,715,436 _3967 Psyr_3968: Psyr_3968 - Protein of unknown function DUF112, at 4,715,438 to 4,716,952 _3968 Psyr_3969: Psyr_3969 - Putative ammonia monooxygenase, at 4,716,945 to 4,717,979 _3969 Position (kb) 4715 4716 4717Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4714.484 kb on + strand, within Psyr_3966at 4714.559 kb on - strand, within Psyr_3966at 4714.695 kb on + strand, within Psyr_3966at 4714.710 kb on - strand, within Psyr_3966at 4714.739 kb on + strand, within Psyr_3966at 4714.739 kb on + strand, within Psyr_3966at 4714.739 kb on + strand, within Psyr_3966at 4714.739 kb on + strand, within Psyr_3966at 4714.740 kb on - strand, within Psyr_3966at 4714.740 kb on - strand, within Psyr_3966at 4714.740 kb on - strand, within Psyr_3966at 4714.740 kb on - strand, within Psyr_3966at 4714.740 kb on - strand, within Psyr_3966at 4714.853 kb on + strandat 4714.853 kb on + strandat 4714.853 kb on + strandat 4714.853 kb on + strandat 4714.853 kb on + strandat 4714.853 kb on + strandat 4714.853 kb on + strandat 4714.853 kb on + strandat 4714.853 kb on + strandat 4714.853 kb on + strandat 4714.854 kb on - strandat 4714.854 kb on - strandat 4714.854 kb on - strandat 4714.854 kb on - strandat 4714.854 kb on - strandat 4714.854 kb on - strandat 4714.854 kb on - strandat 4714.854 kb on - strandat 4714.854 kb on - strandat 4714.854 kb on - strandat 4714.877 kb on + strandat 4714.878 kb on - strandat 4714.985 kb on + strandat 4714.985 kb on + strandat 4714.985 kb on + strandat 4714.985 kb on + strandat 4714.985 kb on + strandat 4714.985 kb on + strandat 4714.985 kb on + strandat 4714.985 kb on + strandat 4714.986 kb on - strandat 4714.986 kb on - strandat 4714.986 kb on - strandat 4714.986 kb on - strandat 4714.986 kb on - strandat 4715.068 kb on + strand, within Psyr_3967at 4715.068 kb on + strand, within Psyr_3967at 4715.068 kb on + strand, within Psyr_3967at 4715.134 kb on + strand, within Psyr_3967at 4715.134 kb on + strand, within Psyr_3967at 4715.135 kb on - strand, within Psyr_3967at 4715.135 kb on - strand, within Psyr_3967at 4715.434 kb on + strandat 4715.435 kb on - strandat 4715.489 kb on + strandat 4715.489 kb on + strandat 4715.489 kb on + strandat 4715.489 kb on + strandat 4715.490 kb on - strandat 4715.490 kb on - strandat 4715.490 kb on - strandat 4715.490 kb on - strandat 4715.527 kb on + strandat 4715.645 kb on + strand, within Psyr_3968at 4715.645 kb on + strand, within Psyr_3968at 4715.883 kb on - strand, within Psyr_3968at 4716.014 kb on + strand, within Psyr_3968at 4716.036 kb on + strand, within Psyr_3968at 4716.036 kb on + strand, within Psyr_3968at 4716.036 kb on + strand, within Psyr_3968at 4716.036 kb on + strand, within Psyr_3968at 4716.036 kb on + strand, within Psyr_3968at 4716.036 kb on + strand, within Psyr_3968at 4716.036 kb on + strand, within Psyr_3968at 4716.036 kb on + strand, within Psyr_3968at 4716.036 kb on + strand, within Psyr_3968at 4716.036 kb on + strand, within Psyr_3968at 4716.036 kb on + strand, within Psyr_3968at 4716.036 kb on + strand, within Psyr_3968at 4716.036 kb on + strand, within Psyr_3968at 4716.036 kb on + strand, within Psyr_3968at 4716.036 kb on + strand, within Psyr_3968at 4716.036 kb on + strand, within Psyr_3968at 4716.036 kb on + strand, within Psyr_3968at 4716.036 kb on + strand, within Psyr_3968at 4716.036 kb on + strand, within Psyr_3968at 4716.036 kb on + strand, within Psyr_3968at 4716.036 kb on + strand, within Psyr_3968at 4716.036 kb on + strand, within Psyr_3968at 4716.037 kb on - strand, within Psyr_3968at 4716.037 kb on - strand, within Psyr_3968at 4716.037 kb on - strand, within Psyr_3968at 4716.037 kb on - strand, within Psyr_3968at 4716.037 kb on - strand, within Psyr_3968at 4716.037 kb on - strand, within Psyr_3968at 4716.037 kb on - strand, within Psyr_3968at 4716.037 kb on - strand, within Psyr_3968at 4716.037 kb on - strand, within Psyr_3968at 4716.037 kb on - strand, within Psyr_3968at 4716.037 kb on - strand, within Psyr_3968at 4716.037 kb on - strand, within Psyr_3968at 4716.037 kb on - strand, within Psyr_3968at 4716.037 kb on - strand, within Psyr_3968at 4716.037 kb on - strand, within Psyr_3968at 4716.037 kb on - strand, within Psyr_3968at 4716.202 kb on + strand, within Psyr_3968at 4716.202 kb on + strand, within Psyr_3968at 4716.202 kb on + strand, within Psyr_3968at 4716.203 kb on - strand, within Psyr_3968at 4716.203 kb on - strand, within Psyr_3968at 4716.278 kb on + strand, within Psyr_3968at 4716.278 kb on + strand, within Psyr_3968at 4716.278 kb on + strand, within Psyr_3968at 4716.278 kb on + strand, within Psyr_3968at 4716.278 kb on + strand, within Psyr_3968at 4716.278 kb on + strand, within Psyr_3968at 4716.279 kb on - strand, within Psyr_3968at 4716.279 kb on - strand, within Psyr_3968at 4716.279 kb on - strand, within Psyr_3968at 4716.279 kb on - strand, within Psyr_3968at 4716.279 kb on - strand, within Psyr_3968at 4716.279 kb on - strand, within Psyr_3968at 4716.279 kb on - strand, within Psyr_3968at 4716.279 kb on - strand, within Psyr_3968at 4716.279 kb on - strand, within Psyr_3968at 4716.458 kb on + strand, within Psyr_3968at 4716.458 kb on + strand, within Psyr_3968at 4716.653 kb on + strand, within Psyr_3968at 4716.653 kb on + strand, within Psyr_3968at 4716.654 kb on - strand, within Psyr_3968at 4716.654 kb on - strand, within Psyr_3968at 4716.654 kb on - strand, within Psyr_3968at 4716.654 kb on - strand, within Psyr_3968at 4716.654 kb on - strand, within Psyr_3968at 4716.654 kb on - strand, within Psyr_3968at 4716.704 kb on - strand, within Psyr_3968at 4716.713 kb on + strand, within Psyr_3968at 4716.713 kb on + strand, within Psyr_3968at 4717.186 kb on + strand, within Psyr_3969at 4717.187 kb on - strand, within Psyr_3969at 4717.431 kb on + strand, within Psyr_3969at 4717.431 kb on + strand, within Psyr_3969at 4717.431 kb on + strand, within Psyr_3969at 4717.431 kb on + strand, within Psyr_3969at 4717.432 kb on - strand, within Psyr_3969at 4717.432 kb on - strand, within Psyr_3969at 4717.432 kb on - strand, within Psyr_3969at 4717.432 kb on - strand, within Psyr_3969at 4717.432 kb on - strand, within Psyr_3969at 4717.432 kb on - strand, within Psyr_3969at 4717.435 kb on + strand, within Psyr_3969at 4717.435 kb on + strand, within Psyr_3969at 4717.435 kb on + strand, within Psyr_3969at 4717.435 kb on + strand, within Psyr_3969at 4717.436 kb on - strand, within Psyr_3969at 4717.436 kb on - strand, within Psyr_3969at 4717.436 kb on - strand, within Psyr_3969

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Flavone 0.125 mg/ml
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4,714,484 + Psyr_3966 0.56 +1.1
4,714,559 - Psyr_3966 0.63 +1.1
4,714,695 + Psyr_3966 0.77 -0.3
4,714,710 - Psyr_3966 0.79 -0.2
4,714,739 + Psyr_3966 0.82 -0.0
4,714,739 + Psyr_3966 0.82 -0.2
4,714,739 + Psyr_3966 0.82 +0.2
4,714,739 + Psyr_3966 0.82 +3.8
4,714,740 - Psyr_3966 0.82 -0.3
4,714,740 - Psyr_3966 0.82 -2.3
4,714,740 - Psyr_3966 0.82 -0.2
4,714,740 - Psyr_3966 0.82 +0.5
4,714,740 - Psyr_3966 0.82 +0.7
4,714,853 + +0.4
4,714,853 + +1.3
4,714,853 + +1.5
4,714,853 + +0.5
4,714,853 + +0.4
4,714,853 + -0.3
4,714,853 + -0.4
4,714,853 + +0.2
4,714,853 + +1.1
4,714,853 + -0.6
4,714,854 - +0.8
4,714,854 - -0.1
4,714,854 - +0.1
4,714,854 - +0.6
4,714,854 - -0.1
4,714,854 - -2.3
4,714,854 - -0.2
4,714,854 - -1.5
4,714,854 - +0.7
4,714,854 - +0.6
4,714,877 + +0.1
4,714,878 - -0.4
4,714,985 + +0.7
4,714,985 + +0.9
4,714,985 + -0.1
4,714,985 + -2.8
4,714,985 + +1.0
4,714,985 + +0.2
4,714,985 + +0.2
4,714,985 + +1.3
4,714,986 - -0.8
4,714,986 - +0.7
4,714,986 - +0.8
4,714,986 - +1.4
4,714,986 - +0.8
4,715,068 + Psyr_3967 0.20 +0.7
4,715,068 + Psyr_3967 0.20 -2.6
4,715,068 + Psyr_3967 0.20 +0.2
4,715,134 + Psyr_3967 0.34 -0.7
4,715,134 + Psyr_3967 0.34 -1.4
4,715,135 - Psyr_3967 0.34 +0.1
4,715,135 - Psyr_3967 0.34 -0.2
4,715,434 + +2.6
4,715,435 - -0.6
4,715,489 + -1.2
4,715,489 + -0.7
4,715,489 + -1.3
4,715,489 + -0.4
4,715,490 - -0.4
4,715,490 - +0.2
4,715,490 - +0.3
4,715,490 - -0.7
4,715,527 + +1.7
4,715,645 + Psyr_3968 0.14 +0.1
4,715,645 + Psyr_3968 0.14 -1.0
4,715,883 - Psyr_3968 0.29 +1.4
4,716,014 + Psyr_3968 0.38 +0.8
4,716,036 + Psyr_3968 0.39 +0.1
4,716,036 + Psyr_3968 0.39 +1.4
4,716,036 + Psyr_3968 0.39 +0.8
4,716,036 + Psyr_3968 0.39 -0.1
4,716,036 + Psyr_3968 0.39 +0.6
4,716,036 + Psyr_3968 0.39 +1.0
4,716,036 + Psyr_3968 0.39 -1.2
4,716,036 + Psyr_3968 0.39 -0.2
4,716,036 + Psyr_3968 0.39 +0.4
4,716,036 + Psyr_3968 0.39 +0.7
4,716,036 + Psyr_3968 0.39 +0.7
4,716,036 + Psyr_3968 0.39 +1.4
4,716,036 + Psyr_3968 0.39 -0.4
4,716,036 + Psyr_3968 0.39 -0.6
4,716,036 + Psyr_3968 0.39 -1.9
4,716,036 + Psyr_3968 0.39 +2.8
4,716,036 + Psyr_3968 0.39 +1.5
4,716,036 + Psyr_3968 0.39 +0.8
4,716,036 + Psyr_3968 0.39 -0.0
4,716,036 + Psyr_3968 0.39 -0.1
4,716,036 + Psyr_3968 0.39 -0.3
4,716,036 + Psyr_3968 0.39 -0.4
4,716,037 - Psyr_3968 0.40 -0.9
4,716,037 - Psyr_3968 0.40 +0.5
4,716,037 - Psyr_3968 0.40 +0.7
4,716,037 - Psyr_3968 0.40 -0.8
4,716,037 - Psyr_3968 0.40 +0.2
4,716,037 - Psyr_3968 0.40 +0.4
4,716,037 - Psyr_3968 0.40 -0.0
4,716,037 - Psyr_3968 0.40 +0.4
4,716,037 - Psyr_3968 0.40 -1.9
4,716,037 - Psyr_3968 0.40 +1.1
4,716,037 - Psyr_3968 0.40 +0.3
4,716,037 - Psyr_3968 0.40 +0.8
4,716,037 - Psyr_3968 0.40 +0.0
4,716,037 - Psyr_3968 0.40 -0.7
4,716,037 - Psyr_3968 0.40 +2.2
4,716,037 - Psyr_3968 0.40 +1.2
4,716,202 + Psyr_3968 0.50 +0.8
4,716,202 + Psyr_3968 0.50 +1.8
4,716,202 + Psyr_3968 0.50 -0.1
4,716,203 - Psyr_3968 0.50 -2.1
4,716,203 - Psyr_3968 0.50 -0.2
4,716,278 + Psyr_3968 0.55 -0.8
4,716,278 + Psyr_3968 0.55 +1.1
4,716,278 + Psyr_3968 0.55 -0.5
4,716,278 + Psyr_3968 0.55 -1.1
4,716,278 + Psyr_3968 0.55 +1.3
4,716,278 + Psyr_3968 0.55 +1.5
4,716,279 - Psyr_3968 0.56 +0.2
4,716,279 - Psyr_3968 0.56 +0.9
4,716,279 - Psyr_3968 0.56 +0.2
4,716,279 - Psyr_3968 0.56 -0.7
4,716,279 - Psyr_3968 0.56 +0.5
4,716,279 - Psyr_3968 0.56 +0.7
4,716,279 - Psyr_3968 0.56 -2.7
4,716,279 - Psyr_3968 0.56 +1.1
4,716,279 - Psyr_3968 0.56 +0.5
4,716,458 + Psyr_3968 0.67 -0.5
4,716,458 + Psyr_3968 0.67 -0.3
4,716,653 + Psyr_3968 0.80 +0.8
4,716,653 + Psyr_3968 0.80 +1.1
4,716,654 - Psyr_3968 0.80 -0.6
4,716,654 - Psyr_3968 0.80 +0.9
4,716,654 - Psyr_3968 0.80 -0.7
4,716,654 - Psyr_3968 0.80 -1.2
4,716,654 - Psyr_3968 0.80 +0.5
4,716,654 - Psyr_3968 0.80 -0.9
4,716,704 - Psyr_3968 0.84 -0.2
4,716,713 + Psyr_3968 0.84 +1.0
4,716,713 + Psyr_3968 0.84 -2.9
4,717,186 + Psyr_3969 0.23 +0.8
4,717,187 - Psyr_3969 0.23 +0.5
4,717,431 + Psyr_3969 0.47 -0.2
4,717,431 + Psyr_3969 0.47 -0.7
4,717,431 + Psyr_3969 0.47 +2.5
4,717,431 + Psyr_3969 0.47 +0.5
4,717,432 - Psyr_3969 0.47 +1.0
4,717,432 - Psyr_3969 0.47 +0.7
4,717,432 - Psyr_3969 0.47 +0.5
4,717,432 - Psyr_3969 0.47 +1.7
4,717,432 - Psyr_3969 0.47 -0.2
4,717,432 - Psyr_3969 0.47 +0.1
4,717,435 + Psyr_3969 0.47 +0.3
4,717,435 + Psyr_3969 0.47 +1.5
4,717,435 + Psyr_3969 0.47 +0.0
4,717,435 + Psyr_3969 0.47 -0.6
4,717,436 - Psyr_3969 0.47 -0.2
4,717,436 - Psyr_3969 0.47 +1.7
4,717,436 - Psyr_3969 0.47 -0.7

Or see this region's nucleotide sequence