Experiment: KB with Flavone 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3933 and Psyr_3934 are separated by 22 nucleotides Psyr_3934 and Psyr_3935 are separated by 124 nucleotides Psyr_3935 and Psyr_3936 are separated by 10 nucleotides
Psyr_3933: Psyr_3933 - conserved hypothetical protein, at 4,679,019 to 4,679,318
_3933
Psyr_3934: Psyr_3934 - Short-chain dehydrogenase/reductase SDR, at 4,679,341 to 4,680,090
_3934
Psyr_3935: Psyr_3935 - Short-chain dehydrogenase/reductase SDR, at 4,680,215 to 4,680,976
_3935
Psyr_3936: Psyr_3936 - General substrate transporter:Major facilitator superfamily, at 4,680,987 to 4,682,327
_3936
Position (kb) 4680
4681 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4679.226 kb on - strand, within Psyr_3933 at 4679.226 kb on - strand, within Psyr_3933 at 4679.776 kb on - strand, within Psyr_3934 at 4680.015 kb on - strand, within Psyr_3934 at 4680.520 kb on - strand, within Psyr_3935 at 4680.520 kb on - strand, within Psyr_3935 at 4680.543 kb on + strand, within Psyr_3935 at 4680.543 kb on + strand, within Psyr_3935 at 4680.543 kb on + strand, within Psyr_3935 at 4680.543 kb on + strand, within Psyr_3935 at 4680.544 kb on - strand, within Psyr_3935 at 4680.544 kb on - strand, within Psyr_3935 at 4680.873 kb on + strand, within Psyr_3935 at 4680.968 kb on - strand at 4681.066 kb on + strand at 4681.067 kb on - strand at 4681.067 kb on - strand at 4681.067 kb on - strand at 4681.261 kb on + strand, within Psyr_3936 at 4681.261 kb on + strand, within Psyr_3936 at 4681.262 kb on - strand, within Psyr_3936 at 4681.481 kb on + strand, within Psyr_3936 at 4681.855 kb on + strand, within Psyr_3936 at 4681.855 kb on + strand, within Psyr_3936 at 4681.855 kb on + strand, within Psyr_3936 at 4681.903 kb on + strand, within Psyr_3936 at 4681.904 kb on - strand, within Psyr_3936 at 4681.904 kb on - strand, within Psyr_3936 at 4681.918 kb on + strand, within Psyr_3936 at 4681.918 kb on + strand, within Psyr_3936 at 4681.919 kb on - strand, within Psyr_3936 at 4681.919 kb on - strand, within Psyr_3936 at 4681.919 kb on - strand, within Psyr_3936 at 4681.919 kb on - strand, within Psyr_3936
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Flavone 0.125 mg/ml remove 4,679,226 - Psyr_3933 0.69 +2.8 4,679,226 - Psyr_3933 0.69 -0.1 4,679,776 - Psyr_3934 0.58 +2.1 4,680,015 - Psyr_3934 0.90 +0.1 4,680,520 - Psyr_3935 0.40 +0.5 4,680,520 - Psyr_3935 0.40 -1.8 4,680,543 + Psyr_3935 0.43 -0.8 4,680,543 + Psyr_3935 0.43 +1.1 4,680,543 + Psyr_3935 0.43 +1.3 4,680,543 + Psyr_3935 0.43 +0.7 4,680,544 - Psyr_3935 0.43 -0.2 4,680,544 - Psyr_3935 0.43 +2.3 4,680,873 + Psyr_3935 0.86 +1.6 4,680,968 - -0.5 4,681,066 + -0.3 4,681,067 - -2.7 4,681,067 - +0.5 4,681,067 - -0.5 4,681,261 + Psyr_3936 0.20 +0.3 4,681,261 + Psyr_3936 0.20 -1.8 4,681,262 - Psyr_3936 0.21 -0.1 4,681,481 + Psyr_3936 0.37 +1.0 4,681,855 + Psyr_3936 0.65 -2.8 4,681,855 + Psyr_3936 0.65 -0.5 4,681,855 + Psyr_3936 0.65 +0.5 4,681,903 + Psyr_3936 0.68 -1.1 4,681,904 - Psyr_3936 0.68 +2.1 4,681,904 - Psyr_3936 0.68 -0.5 4,681,918 + Psyr_3936 0.69 +0.7 4,681,918 + Psyr_3936 0.69 -0.4 4,681,919 - Psyr_3936 0.70 -0.6 4,681,919 - Psyr_3936 0.70 -0.1 4,681,919 - Psyr_3936 0.70 -0.5 4,681,919 - Psyr_3936 0.70 +0.4
Or see this region's nucleotide sequence