Experiment: KB with Flavone 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3880 and Psyr_3881 overlap by 4 nucleotides Psyr_3881 and Psyr_3882 are separated by 65 nucleotides Psyr_3882 and Psyr_3883 are separated by 113 nucleotides Psyr_3883 and Psyr_3884 are separated by 319 nucleotides
Psyr_3880: Psyr_3880 - Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal, at 4,620,466 to 4,622,958
_3880
Psyr_3881: Psyr_3881 - conserved hypothetical protein, at 4,622,955 to 4,623,611
_3881
Psyr_3882: Psyr_3882 - conserved hypothetical protein, at 4,623,677 to 4,623,898
_3882
Psyr_3883: Psyr_3883 - dCTP deaminase, at 4,624,012 to 4,624,578
_3883
Psyr_3884: Psyr_3884 - cold-shock DNA-binding protein family, at 4,624,898 to 4,625,107
_3884
Position (kb) 4623
4624 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4622.695 kb on + strand, within Psyr_3880 at 4622.696 kb on - strand, within Psyr_3880 at 4622.696 kb on - strand, within Psyr_3880 at 4622.817 kb on + strand at 4622.820 kb on - strand at 4622.820 kb on - strand at 4622.820 kb on - strand at 4622.964 kb on + strand at 4623.021 kb on + strand, within Psyr_3881 at 4623.021 kb on + strand, within Psyr_3881 at 4623.021 kb on + strand, within Psyr_3881 at 4623.021 kb on + strand, within Psyr_3881 at 4623.021 kb on + strand, within Psyr_3881 at 4623.021 kb on + strand, within Psyr_3881 at 4623.021 kb on + strand, within Psyr_3881 at 4623.021 kb on + strand, within Psyr_3881 at 4623.021 kb on + strand, within Psyr_3881 at 4623.021 kb on + strand, within Psyr_3881 at 4623.021 kb on + strand, within Psyr_3881 at 4623.022 kb on - strand, within Psyr_3881 at 4623.022 kb on - strand, within Psyr_3881 at 4623.022 kb on - strand, within Psyr_3881 at 4623.022 kb on - strand, within Psyr_3881 at 4623.022 kb on - strand, within Psyr_3881 at 4623.022 kb on - strand, within Psyr_3881 at 4623.022 kb on - strand, within Psyr_3881 at 4623.022 kb on - strand, within Psyr_3881 at 4623.022 kb on - strand, within Psyr_3881 at 4623.412 kb on + strand, within Psyr_3881 at 4623.412 kb on + strand, within Psyr_3881 at 4623.412 kb on + strand, within Psyr_3881 at 4623.413 kb on - strand, within Psyr_3881 at 4623.413 kb on - strand, within Psyr_3881 at 4623.413 kb on - strand, within Psyr_3881 at 4623.413 kb on - strand, within Psyr_3881 at 4623.439 kb on - strand, within Psyr_3881 at 4623.486 kb on + strand, within Psyr_3881 at 4623.486 kb on + strand, within Psyr_3881 at 4623.486 kb on + strand, within Psyr_3881 at 4623.487 kb on - strand, within Psyr_3881 at 4623.573 kb on + strand at 4623.573 kb on + strand at 4623.573 kb on + strand at 4623.573 kb on + strand at 4623.573 kb on + strand at 4623.573 kb on + strand at 4623.573 kb on + strand at 4623.573 kb on + strand at 4623.573 kb on + strand at 4623.573 kb on + strand at 4623.573 kb on + strand at 4623.574 kb on - strand at 4623.574 kb on - strand at 4623.574 kb on - strand at 4623.574 kb on - strand at 4623.574 kb on - strand at 4623.574 kb on - strand at 4623.574 kb on - strand at 4623.574 kb on - strand at 4623.574 kb on - strand at 4623.574 kb on - strand at 4623.574 kb on - strand at 4623.574 kb on - strand at 4623.574 kb on - strand at 4623.574 kb on - strand at 4623.574 kb on - strand at 4623.629 kb on + strand at 4623.629 kb on + strand at 4623.629 kb on + strand at 4623.629 kb on + strand at 4623.629 kb on + strand at 4623.630 kb on - strand at 4623.715 kb on + strand, within Psyr_3882 at 4623.716 kb on - strand, within Psyr_3882 at 4623.716 kb on - strand, within Psyr_3882 at 4623.889 kb on + strand at 4623.890 kb on - strand at 4623.890 kb on - strand at 4623.929 kb on + strand at 4623.930 kb on - strand at 4623.930 kb on - strand at 4623.930 kb on - strand at 4623.938 kb on - strand at 4623.959 kb on + strand at 4623.959 kb on + strand at 4623.959 kb on + strand at 4623.959 kb on + strand at 4623.959 kb on + strand at 4623.960 kb on - strand at 4623.960 kb on - strand at 4623.960 kb on - strand at 4623.976 kb on + strand at 4623.979 kb on + strand at 4623.979 kb on + strand at 4623.979 kb on + strand at 4623.979 kb on + strand at 4623.980 kb on - strand at 4623.980 kb on - strand at 4623.980 kb on - strand at 4624.049 kb on + strand at 4624.050 kb on - strand at 4624.071 kb on - strand, within Psyr_3883 at 4624.133 kb on + strand, within Psyr_3883 at 4624.336 kb on + strand, within Psyr_3883 at 4624.336 kb on + strand, within Psyr_3883 at 4624.336 kb on + strand, within Psyr_3883 at 4624.703 kb on + strand at 4624.703 kb on + strand at 4624.703 kb on + strand at 4624.704 kb on - strand at 4624.704 kb on - strand at 4624.894 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Flavone 0.125 mg/ml remove 4,622,695 + Psyr_3880 0.89 +0.1 4,622,696 - Psyr_3880 0.89 -0.3 4,622,696 - Psyr_3880 0.89 -0.5 4,622,817 + -0.4 4,622,820 - -0.8 4,622,820 - +1.4 4,622,820 - -0.8 4,622,964 + +1.1 4,623,021 + Psyr_3881 0.10 -0.2 4,623,021 + Psyr_3881 0.10 -1.6 4,623,021 + Psyr_3881 0.10 -0.3 4,623,021 + Psyr_3881 0.10 -0.9 4,623,021 + Psyr_3881 0.10 +0.5 4,623,021 + Psyr_3881 0.10 -1.5 4,623,021 + Psyr_3881 0.10 -0.2 4,623,021 + Psyr_3881 0.10 +0.1 4,623,021 + Psyr_3881 0.10 +0.2 4,623,021 + Psyr_3881 0.10 -0.4 4,623,021 + Psyr_3881 0.10 +0.2 4,623,022 - Psyr_3881 0.10 +0.4 4,623,022 - Psyr_3881 0.10 +0.4 4,623,022 - Psyr_3881 0.10 -0.5 4,623,022 - Psyr_3881 0.10 -1.8 4,623,022 - Psyr_3881 0.10 -0.9 4,623,022 - Psyr_3881 0.10 -1.6 4,623,022 - Psyr_3881 0.10 +0.3 4,623,022 - Psyr_3881 0.10 +1.0 4,623,022 - Psyr_3881 0.10 +0.9 4,623,412 + Psyr_3881 0.70 +0.1 4,623,412 + Psyr_3881 0.70 -0.2 4,623,412 + Psyr_3881 0.70 +0.7 4,623,413 - Psyr_3881 0.70 +0.4 4,623,413 - Psyr_3881 0.70 +2.1 4,623,413 - Psyr_3881 0.70 +0.7 4,623,413 - Psyr_3881 0.70 +0.2 4,623,439 - Psyr_3881 0.74 +0.4 4,623,486 + Psyr_3881 0.81 +0.6 4,623,486 + Psyr_3881 0.81 +0.5 4,623,486 + Psyr_3881 0.81 -0.7 4,623,487 - Psyr_3881 0.81 -0.1 4,623,573 + -0.6 4,623,573 + +0.4 4,623,573 + +0.2 4,623,573 + -3.2 4,623,573 + +0.3 4,623,573 + +0.5 4,623,573 + -0.4 4,623,573 + -0.7 4,623,573 + -1.2 4,623,573 + -0.3 4,623,573 + +0.8 4,623,574 - -0.7 4,623,574 - -0.4 4,623,574 - +0.7 4,623,574 - -0.2 4,623,574 - +1.0 4,623,574 - +0.7 4,623,574 - +0.7 4,623,574 - +0.6 4,623,574 - +1.1 4,623,574 - -0.1 4,623,574 - -1.9 4,623,574 - -0.3 4,623,574 - +0.2 4,623,574 - +1.4 4,623,574 - -0.0 4,623,629 + -1.1 4,623,629 + -1.7 4,623,629 + +0.2 4,623,629 + +0.2 4,623,629 + -1.1 4,623,630 - +0.5 4,623,715 + Psyr_3882 0.17 -0.7 4,623,716 - Psyr_3882 0.18 -0.5 4,623,716 - Psyr_3882 0.18 -0.5 4,623,889 + -0.6 4,623,890 - -0.8 4,623,890 - -0.6 4,623,929 + +0.3 4,623,930 - -2.4 4,623,930 - +1.7 4,623,930 - +0.2 4,623,938 - -0.2 4,623,959 + -0.5 4,623,959 + +1.3 4,623,959 + +0.4 4,623,959 + +0.3 4,623,959 + +2.8 4,623,960 - +0.7 4,623,960 - -0.3 4,623,960 - +1.5 4,623,976 + -1.6 4,623,979 + +1.1 4,623,979 + -0.4 4,623,979 + -1.0 4,623,979 + -0.7 4,623,980 - -0.6 4,623,980 - +1.4 4,623,980 - +0.4 4,624,049 + -0.5 4,624,050 - -0.1 4,624,071 - Psyr_3883 0.10 -2.9 4,624,133 + Psyr_3883 0.21 -2.8 4,624,336 + Psyr_3883 0.57 -0.5 4,624,336 + Psyr_3883 0.57 -1.3 4,624,336 + Psyr_3883 0.57 -2.8 4,624,703 + -0.1 4,624,703 + -0.9 4,624,703 + +0.1 4,624,704 - +2.1 4,624,704 - -0.3 4,624,894 + -0.7
Or see this region's nucleotide sequence