Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3309

Experiment: KB with Flavone 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3308 and Psyr_3309 overlap by 1 nucleotidesPsyr_3309 and Psyr_3310 overlap by 4 nucleotidesPsyr_3310 and Psyr_3311 are separated by 15 nucleotides Psyr_3308: Psyr_3308 - Glycosyl transferase, group 1, at 3,959,306 to 3,960,406 _3308 Psyr_3309: Psyr_3309 - membrane protein, putative, at 3,960,406 to 3,961,821 _3309 Psyr_3310: Psyr_3310 - transferase hexapeptide repeat protein, at 3,961,818 to 3,962,639 _3310 Psyr_3311: Psyr_3311 - Virulence factor MVIN-like protein, at 3,962,655 to 3,964,070 _3311 Position (kb) 3960 3961 3962Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3959.576 kb on + strand, within Psyr_3308at 3959.577 kb on - strand, within Psyr_3308at 3959.577 kb on - strand, within Psyr_3308at 3959.577 kb on - strand, within Psyr_3308at 3959.577 kb on - strand, within Psyr_3308at 3959.577 kb on - strand, within Psyr_3308at 3959.587 kb on + strand, within Psyr_3308at 3959.628 kb on + strand, within Psyr_3308at 3959.628 kb on + strand, within Psyr_3308at 3959.628 kb on + strand, within Psyr_3308at 3959.628 kb on + strand, within Psyr_3308at 3959.628 kb on + strand, within Psyr_3308at 3959.628 kb on + strand, within Psyr_3308at 3959.628 kb on + strand, within Psyr_3308at 3959.628 kb on + strand, within Psyr_3308at 3959.628 kb on + strand, within Psyr_3308at 3959.628 kb on + strand, within Psyr_3308at 3959.628 kb on + strand, within Psyr_3308at 3959.629 kb on - strand, within Psyr_3308at 3959.629 kb on - strand, within Psyr_3308at 3959.629 kb on - strand, within Psyr_3308at 3959.629 kb on - strand, within Psyr_3308at 3959.629 kb on - strand, within Psyr_3308at 3959.629 kb on - strand, within Psyr_3308at 3959.629 kb on - strand, within Psyr_3308at 3959.629 kb on - strand, within Psyr_3308at 3959.629 kb on - strand, within Psyr_3308at 3959.633 kb on + strand, within Psyr_3308at 3959.634 kb on - strand, within Psyr_3308at 3959.637 kb on + strand, within Psyr_3308at 3959.637 kb on + strand, within Psyr_3308at 3959.637 kb on + strand, within Psyr_3308at 3959.637 kb on + strand, within Psyr_3308at 3959.638 kb on - strand, within Psyr_3308at 3959.638 kb on - strand, within Psyr_3308at 3959.638 kb on - strand, within Psyr_3308at 3959.724 kb on - strand, within Psyr_3308at 3959.803 kb on + strand, within Psyr_3308at 3959.803 kb on + strand, within Psyr_3308at 3959.803 kb on + strand, within Psyr_3308at 3959.803 kb on + strand, within Psyr_3308at 3959.804 kb on - strand, within Psyr_3308at 3959.804 kb on - strand, within Psyr_3308at 3959.804 kb on - strand, within Psyr_3308at 3959.804 kb on - strand, within Psyr_3308at 3959.804 kb on - strand, within Psyr_3308at 3959.838 kb on + strand, within Psyr_3308at 3960.010 kb on - strand, within Psyr_3308at 3960.054 kb on + strand, within Psyr_3308at 3960.446 kb on + strandat 3960.584 kb on - strand, within Psyr_3309at 3960.652 kb on + strand, within Psyr_3309at 3960.652 kb on + strand, within Psyr_3309at 3960.653 kb on - strand, within Psyr_3309at 3960.653 kb on - strand, within Psyr_3309at 3960.806 kb on + strand, within Psyr_3309at 3960.938 kb on - strand, within Psyr_3309at 3960.991 kb on + strand, within Psyr_3309at 3961.318 kb on + strand, within Psyr_3309at 3961.319 kb on - strand, within Psyr_3309at 3961.394 kb on - strand, within Psyr_3309at 3961.394 kb on - strand, within Psyr_3309at 3961.468 kb on + strand, within Psyr_3309at 3961.469 kb on - strand, within Psyr_3309at 3961.470 kb on + strand, within Psyr_3309at 3961.471 kb on - strand, within Psyr_3309at 3961.505 kb on - strand, within Psyr_3309at 3961.505 kb on - strand, within Psyr_3309at 3961.505 kb on - strand, within Psyr_3309at 3961.505 kb on - strand, within Psyr_3309at 3961.505 kb on - strand, within Psyr_3309at 3961.510 kb on + strand, within Psyr_3309at 3961.511 kb on - strand, within Psyr_3309at 3961.511 kb on - strand, within Psyr_3309at 3961.511 kb on - strand, within Psyr_3309at 3961.511 kb on - strand, within Psyr_3309at 3961.632 kb on + strand, within Psyr_3309at 3961.632 kb on + strand, within Psyr_3309at 3961.633 kb on - strand, within Psyr_3309at 3961.678 kb on + strand, within Psyr_3309at 3961.678 kb on + strand, within Psyr_3309at 3961.678 kb on + strand, within Psyr_3309at 3961.679 kb on - strand, within Psyr_3309at 3961.679 kb on - strand, within Psyr_3309at 3961.679 kb on - strand, within Psyr_3309at 3961.844 kb on + strandat 3961.844 kb on + strandat 3961.845 kb on - strandat 3961.955 kb on + strand, within Psyr_3310at 3961.955 kb on + strand, within Psyr_3310at 3961.955 kb on + strand, within Psyr_3310at 3961.956 kb on - strand, within Psyr_3310at 3961.956 kb on - strand, within Psyr_3310at 3961.956 kb on - strand, within Psyr_3310at 3961.986 kb on + strand, within Psyr_3310at 3962.034 kb on + strand, within Psyr_3310at 3962.034 kb on + strand, within Psyr_3310at 3962.034 kb on + strand, within Psyr_3310at 3962.034 kb on + strand, within Psyr_3310at 3962.034 kb on + strand, within Psyr_3310at 3962.035 kb on - strand, within Psyr_3310at 3962.035 kb on - strand, within Psyr_3310at 3962.136 kb on + strand, within Psyr_3310at 3962.136 kb on + strand, within Psyr_3310at 3962.136 kb on + strand, within Psyr_3310at 3962.136 kb on + strand, within Psyr_3310at 3962.137 kb on - strand, within Psyr_3310at 3962.137 kb on - strand, within Psyr_3310at 3962.137 kb on - strand, within Psyr_3310at 3962.598 kb on + strandat 3962.598 kb on + strandat 3962.598 kb on + strandat 3962.599 kb on - strandat 3962.599 kb on - strandat 3962.599 kb on - strandat 3962.599 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Flavone 0.125 mg/ml
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3,959,576 + Psyr_3308 0.25 -0.2
3,959,577 - Psyr_3308 0.25 -0.0
3,959,577 - Psyr_3308 0.25 -0.7
3,959,577 - Psyr_3308 0.25 -0.4
3,959,577 - Psyr_3308 0.25 +0.5
3,959,577 - Psyr_3308 0.25 +0.1
3,959,587 + Psyr_3308 0.26 +0.1
3,959,628 + Psyr_3308 0.29 -0.5
3,959,628 + Psyr_3308 0.29 +2.8
3,959,628 + Psyr_3308 0.29 +0.5
3,959,628 + Psyr_3308 0.29 -0.7
3,959,628 + Psyr_3308 0.29 -1.8
3,959,628 + Psyr_3308 0.29 +0.4
3,959,628 + Psyr_3308 0.29 +1.3
3,959,628 + Psyr_3308 0.29 +1.3
3,959,628 + Psyr_3308 0.29 +0.1
3,959,628 + Psyr_3308 0.29 +0.8
3,959,628 + Psyr_3308 0.29 -0.7
3,959,629 - Psyr_3308 0.29 +0.3
3,959,629 - Psyr_3308 0.29 -0.1
3,959,629 - Psyr_3308 0.29 +0.0
3,959,629 - Psyr_3308 0.29 -0.0
3,959,629 - Psyr_3308 0.29 -0.9
3,959,629 - Psyr_3308 0.29 -0.6
3,959,629 - Psyr_3308 0.29 -0.6
3,959,629 - Psyr_3308 0.29 +0.5
3,959,629 - Psyr_3308 0.29 +0.3
3,959,633 + Psyr_3308 0.30 +1.6
3,959,634 - Psyr_3308 0.30 -1.0
3,959,637 + Psyr_3308 0.30 -0.1
3,959,637 + Psyr_3308 0.30 +1.0
3,959,637 + Psyr_3308 0.30 +1.1
3,959,637 + Psyr_3308 0.30 -0.2
3,959,638 - Psyr_3308 0.30 +0.4
3,959,638 - Psyr_3308 0.30 -0.2
3,959,638 - Psyr_3308 0.30 +0.8
3,959,724 - Psyr_3308 0.38 +0.8
3,959,803 + Psyr_3308 0.45 -0.4
3,959,803 + Psyr_3308 0.45 -0.7
3,959,803 + Psyr_3308 0.45 +1.7
3,959,803 + Psyr_3308 0.45 +0.7
3,959,804 - Psyr_3308 0.45 +1.8
3,959,804 - Psyr_3308 0.45 +0.3
3,959,804 - Psyr_3308 0.45 +0.3
3,959,804 - Psyr_3308 0.45 -0.2
3,959,804 - Psyr_3308 0.45 -1.3
3,959,838 + Psyr_3308 0.48 +1.5
3,960,010 - Psyr_3308 0.64 -0.0
3,960,054 + Psyr_3308 0.68 +0.5
3,960,446 + +0.7
3,960,584 - Psyr_3309 0.13 +1.1
3,960,652 + Psyr_3309 0.17 -0.4
3,960,652 + Psyr_3309 0.17 -2.5
3,960,653 - Psyr_3309 0.17 +0.9
3,960,653 - Psyr_3309 0.17 -0.6
3,960,806 + Psyr_3309 0.28 +0.8
3,960,938 - Psyr_3309 0.38 -0.1
3,960,991 + Psyr_3309 0.41 +3.7
3,961,318 + Psyr_3309 0.64 -1.0
3,961,319 - Psyr_3309 0.64 -2.1
3,961,394 - Psyr_3309 0.70 -0.5
3,961,394 - Psyr_3309 0.70 -1.7
3,961,468 + Psyr_3309 0.75 -0.6
3,961,469 - Psyr_3309 0.75 +0.3
3,961,470 + Psyr_3309 0.75 -1.2
3,961,471 - Psyr_3309 0.75 -2.1
3,961,505 - Psyr_3309 0.78 +2.3
3,961,505 - Psyr_3309 0.78 -1.4
3,961,505 - Psyr_3309 0.78 -2.2
3,961,505 - Psyr_3309 0.78 +0.6
3,961,505 - Psyr_3309 0.78 +0.7
3,961,510 + Psyr_3309 0.78 -0.5
3,961,511 - Psyr_3309 0.78 -1.1
3,961,511 - Psyr_3309 0.78 -1.0
3,961,511 - Psyr_3309 0.78 +2.3
3,961,511 - Psyr_3309 0.78 -2.1
3,961,632 + Psyr_3309 0.87 +1.3
3,961,632 + Psyr_3309 0.87 -1.0
3,961,633 - Psyr_3309 0.87 +0.7
3,961,678 + Psyr_3309 0.90 +0.8
3,961,678 + Psyr_3309 0.90 +0.1
3,961,678 + Psyr_3309 0.90 -0.7
3,961,679 - Psyr_3309 0.90 -1.5
3,961,679 - Psyr_3309 0.90 +0.0
3,961,679 - Psyr_3309 0.90 -2.1
3,961,844 + -0.1
3,961,844 + -0.9
3,961,845 - -0.1
3,961,955 + Psyr_3310 0.17 +0.1
3,961,955 + Psyr_3310 0.17 -0.5
3,961,955 + Psyr_3310 0.17 +0.3
3,961,956 - Psyr_3310 0.17 -1.3
3,961,956 - Psyr_3310 0.17 +1.0
3,961,956 - Psyr_3310 0.17 +2.5
3,961,986 + Psyr_3310 0.20 -0.7
3,962,034 + Psyr_3310 0.26 +0.4
3,962,034 + Psyr_3310 0.26 -1.5
3,962,034 + Psyr_3310 0.26 -1.4
3,962,034 + Psyr_3310 0.26 -0.5
3,962,034 + Psyr_3310 0.26 -0.7
3,962,035 - Psyr_3310 0.26 -0.1
3,962,035 - Psyr_3310 0.26 +0.3
3,962,136 + Psyr_3310 0.39 +2.2
3,962,136 + Psyr_3310 0.39 -0.4
3,962,136 + Psyr_3310 0.39 +0.3
3,962,136 + Psyr_3310 0.39 -3.1
3,962,137 - Psyr_3310 0.39 -0.5
3,962,137 - Psyr_3310 0.39 -0.7
3,962,137 - Psyr_3310 0.39 +0.3
3,962,598 + +2.3
3,962,598 + +0.5
3,962,598 + +0.5
3,962,599 - -2.0
3,962,599 - +0.8
3,962,599 - -0.4
3,962,599 - -0.0

Or see this region's nucleotide sequence