Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3248

Experiment: KB with Flavone 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3247 and Psyr_3248 overlap by 1 nucleotidesPsyr_3248 and Psyr_3249 are separated by 257 nucleotides Psyr_3247: Psyr_3247 - Alkanesulfonate monooxygenase, at 3,890,048 to 3,891,187 _3247 Psyr_3248: Psyr_3248 - Helix-turn-helix, Fis-type, at 3,891,187 to 3,892,293 _3248 Psyr_3249: Psyr_3249 - conserved hypothetical protein, at 3,892,551 to 3,893,954 _3249 Position (kb) 3891 3892 3893Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3890.261 kb on + strand, within Psyr_3247at 3890.261 kb on + strand, within Psyr_3247at 3890.261 kb on + strand, within Psyr_3247at 3890.564 kb on + strand, within Psyr_3247at 3890.621 kb on + strand, within Psyr_3247at 3890.621 kb on + strand, within Psyr_3247at 3890.621 kb on + strand, within Psyr_3247at 3890.673 kb on + strand, within Psyr_3247at 3890.673 kb on + strand, within Psyr_3247at 3890.673 kb on + strand, within Psyr_3247at 3890.673 kb on + strand, within Psyr_3247at 3890.673 kb on + strand, within Psyr_3247at 3890.674 kb on - strand, within Psyr_3247at 3890.996 kb on + strand, within Psyr_3247at 3891.296 kb on + strandat 3891.656 kb on + strand, within Psyr_3248at 3891.656 kb on + strand, within Psyr_3248at 3891.656 kb on + strand, within Psyr_3248at 3891.656 kb on + strand, within Psyr_3248at 3891.656 kb on + strand, within Psyr_3248at 3891.656 kb on + strand, within Psyr_3248at 3891.656 kb on + strand, within Psyr_3248at 3891.656 kb on + strand, within Psyr_3248at 3891.656 kb on + strand, within Psyr_3248at 3891.657 kb on - strand, within Psyr_3248at 3891.657 kb on - strand, within Psyr_3248at 3891.657 kb on - strand, within Psyr_3248at 3891.657 kb on - strand, within Psyr_3248at 3891.657 kb on - strand, within Psyr_3248at 3891.657 kb on - strand, within Psyr_3248at 3891.657 kb on - strand, within Psyr_3248at 3891.727 kb on + strand, within Psyr_3248at 3891.727 kb on + strand, within Psyr_3248at 3891.812 kb on + strand, within Psyr_3248at 3891.812 kb on + strand, within Psyr_3248at 3891.812 kb on + strand, within Psyr_3248at 3891.813 kb on - strand, within Psyr_3248at 3891.813 kb on - strand, within Psyr_3248at 3891.820 kb on + strand, within Psyr_3248at 3891.820 kb on + strand, within Psyr_3248at 3891.886 kb on + strand, within Psyr_3248at 3891.886 kb on + strand, within Psyr_3248at 3891.886 kb on + strand, within Psyr_3248at 3891.886 kb on + strand, within Psyr_3248at 3891.886 kb on + strand, within Psyr_3248at 3891.886 kb on + strand, within Psyr_3248at 3891.886 kb on + strand, within Psyr_3248at 3891.887 kb on - strand, within Psyr_3248at 3891.887 kb on - strand, within Psyr_3248at 3891.887 kb on - strand, within Psyr_3248at 3891.887 kb on - strand, within Psyr_3248at 3891.887 kb on - strand, within Psyr_3248at 3891.887 kb on - strand, within Psyr_3248at 3891.903 kb on + strand, within Psyr_3248at 3891.994 kb on - strand, within Psyr_3248at 3892.113 kb on + strand, within Psyr_3248at 3892.113 kb on + strand, within Psyr_3248at 3892.113 kb on + strand, within Psyr_3248at 3892.113 kb on + strand, within Psyr_3248at 3892.113 kb on + strand, within Psyr_3248at 3892.114 kb on - strand, within Psyr_3248at 3892.114 kb on - strand, within Psyr_3248at 3892.114 kb on - strand, within Psyr_3248at 3892.114 kb on - strand, within Psyr_3248at 3892.357 kb on + strandat 3892.357 kb on + strandat 3892.357 kb on + strandat 3892.462 kb on + strandat 3892.462 kb on + strandat 3892.506 kb on - strandat 3892.552 kb on + strandat 3892.564 kb on - strandat 3892.683 kb on + strandat 3892.875 kb on + strand, within Psyr_3249at 3892.925 kb on + strand, within Psyr_3249at 3893.013 kb on + strand, within Psyr_3249at 3893.013 kb on + strand, within Psyr_3249at 3893.013 kb on + strand, within Psyr_3249at 3893.013 kb on + strand, within Psyr_3249at 3893.013 kb on + strand, within Psyr_3249at 3893.013 kb on + strand, within Psyr_3249at 3893.013 kb on + strand, within Psyr_3249at 3893.014 kb on - strand, within Psyr_3249at 3893.014 kb on - strand, within Psyr_3249at 3893.168 kb on + strand, within Psyr_3249

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Flavone 0.125 mg/ml
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3,890,261 + Psyr_3247 0.19 +1.1
3,890,261 + Psyr_3247 0.19 -0.9
3,890,261 + Psyr_3247 0.19 +0.2
3,890,564 + Psyr_3247 0.45 -0.1
3,890,621 + Psyr_3247 0.50 +1.4
3,890,621 + Psyr_3247 0.50 -0.2
3,890,621 + Psyr_3247 0.50 +0.6
3,890,673 + Psyr_3247 0.55 +0.8
3,890,673 + Psyr_3247 0.55 +0.7
3,890,673 + Psyr_3247 0.55 +0.4
3,890,673 + Psyr_3247 0.55 +1.2
3,890,673 + Psyr_3247 0.55 -1.1
3,890,674 - Psyr_3247 0.55 +1.5
3,890,996 + Psyr_3247 0.83 -0.6
3,891,296 + +1.1
3,891,656 + Psyr_3248 0.42 +2.5
3,891,656 + Psyr_3248 0.42 +0.4
3,891,656 + Psyr_3248 0.42 +0.1
3,891,656 + Psyr_3248 0.42 -0.4
3,891,656 + Psyr_3248 0.42 +1.1
3,891,656 + Psyr_3248 0.42 +0.3
3,891,656 + Psyr_3248 0.42 +1.7
3,891,656 + Psyr_3248 0.42 -0.1
3,891,656 + Psyr_3248 0.42 -0.1
3,891,657 - Psyr_3248 0.42 -0.8
3,891,657 - Psyr_3248 0.42 -0.0
3,891,657 - Psyr_3248 0.42 +0.6
3,891,657 - Psyr_3248 0.42 +0.4
3,891,657 - Psyr_3248 0.42 -0.1
3,891,657 - Psyr_3248 0.42 -1.4
3,891,657 - Psyr_3248 0.42 +1.5
3,891,727 + Psyr_3248 0.49 +0.3
3,891,727 + Psyr_3248 0.49 +0.5
3,891,812 + Psyr_3248 0.56 -0.1
3,891,812 + Psyr_3248 0.56 +1.9
3,891,812 + Psyr_3248 0.56 -1.0
3,891,813 - Psyr_3248 0.57 +0.6
3,891,813 - Psyr_3248 0.57 +0.1
3,891,820 + Psyr_3248 0.57 -0.3
3,891,820 + Psyr_3248 0.57 +1.9
3,891,886 + Psyr_3248 0.63 -1.7
3,891,886 + Psyr_3248 0.63 +0.2
3,891,886 + Psyr_3248 0.63 +0.8
3,891,886 + Psyr_3248 0.63 +0.8
3,891,886 + Psyr_3248 0.63 +1.2
3,891,886 + Psyr_3248 0.63 +1.8
3,891,886 + Psyr_3248 0.63 -0.1
3,891,887 - Psyr_3248 0.63 +0.9
3,891,887 - Psyr_3248 0.63 +0.8
3,891,887 - Psyr_3248 0.63 +2.2
3,891,887 - Psyr_3248 0.63 -0.2
3,891,887 - Psyr_3248 0.63 +0.4
3,891,887 - Psyr_3248 0.63 +0.2
3,891,903 + Psyr_3248 0.65 -0.2
3,891,994 - Psyr_3248 0.73 +0.4
3,892,113 + Psyr_3248 0.84 +0.7
3,892,113 + Psyr_3248 0.84 +0.9
3,892,113 + Psyr_3248 0.84 -0.0
3,892,113 + Psyr_3248 0.84 -0.3
3,892,113 + Psyr_3248 0.84 +1.9
3,892,114 - Psyr_3248 0.84 +2.3
3,892,114 - Psyr_3248 0.84 -0.7
3,892,114 - Psyr_3248 0.84 +0.2
3,892,114 - Psyr_3248 0.84 -0.4
3,892,357 + -0.8
3,892,357 + +2.4
3,892,357 + -1.8
3,892,462 + +0.6
3,892,462 + -0.9
3,892,506 - +0.8
3,892,552 + +0.1
3,892,564 - +0.6
3,892,683 + -0.1
3,892,875 + Psyr_3249 0.23 -0.1
3,892,925 + Psyr_3249 0.27 +1.1
3,893,013 + Psyr_3249 0.33 +0.2
3,893,013 + Psyr_3249 0.33 +2.4
3,893,013 + Psyr_3249 0.33 +2.8
3,893,013 + Psyr_3249 0.33 +0.9
3,893,013 + Psyr_3249 0.33 -0.6
3,893,013 + Psyr_3249 0.33 +0.6
3,893,013 + Psyr_3249 0.33 +0.7
3,893,014 - Psyr_3249 0.33 +2.5
3,893,014 - Psyr_3249 0.33 +1.1
3,893,168 + Psyr_3249 0.44 +0.6

Or see this region's nucleotide sequence