Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2209

Experiment: KB with Flavone 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2208 and Psyr_2209 are separated by 60 nucleotidesPsyr_2209 and Psyr_2210 are separated by 76 nucleotides Psyr_2208: Psyr_2208 - Amidase, at 2,565,581 to 2,567,116 _2208 Psyr_2209: Psyr_2209 - ABC transporter, substrate-binding protein, aliphatic sulfonate, at 2,567,177 to 2,568,151 _2209 Psyr_2210: Psyr_2210 - D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein, at 2,568,228 to 2,569,187 _2210 Position (kb) 2567 2568 2569Strain fitness (log2 ratio) -1 0 1 2at 2566.210 kb on + strand, within Psyr_2208at 2566.214 kb on + strand, within Psyr_2208at 2566.214 kb on + strand, within Psyr_2208at 2566.229 kb on + strand, within Psyr_2208at 2566.230 kb on - strand, within Psyr_2208at 2566.643 kb on + strand, within Psyr_2208at 2566.643 kb on + strand, within Psyr_2208at 2566.644 kb on - strand, within Psyr_2208at 2566.664 kb on + strand, within Psyr_2208at 2566.665 kb on - strand, within Psyr_2208at 2566.739 kb on + strand, within Psyr_2208at 2566.767 kb on - strand, within Psyr_2208at 2566.811 kb on + strand, within Psyr_2208at 2566.846 kb on - strand, within Psyr_2208at 2566.907 kb on + strand, within Psyr_2208at 2566.907 kb on + strand, within Psyr_2208at 2566.908 kb on - strand, within Psyr_2208at 2566.908 kb on - strand, within Psyr_2208at 2566.908 kb on - strand, within Psyr_2208at 2567.073 kb on - strandat 2567.302 kb on - strand, within Psyr_2209at 2567.481 kb on + strand, within Psyr_2209at 2567.482 kb on - strand, within Psyr_2209at 2567.494 kb on - strand, within Psyr_2209at 2567.691 kb on + strand, within Psyr_2209at 2567.745 kb on - strand, within Psyr_2209at 2567.745 kb on - strand, within Psyr_2209at 2567.818 kb on - strand, within Psyr_2209at 2568.364 kb on - strand, within Psyr_2210at 2568.537 kb on + strand, within Psyr_2210at 2568.537 kb on + strand, within Psyr_2210at 2568.537 kb on + strand, within Psyr_2210at 2568.538 kb on - strandat 2568.977 kb on - strand, within Psyr_2210at 2569.012 kb on + strand, within Psyr_2210at 2569.013 kb on - strand, within Psyr_2210

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Flavone 0.125 mg/ml
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2,566,210 + Psyr_2208 0.41 -0.6
2,566,214 + Psyr_2208 0.41 +0.4
2,566,214 + Psyr_2208 0.41 +0.1
2,566,229 + Psyr_2208 0.42 +1.7
2,566,230 - Psyr_2208 0.42 +0.2
2,566,643 + Psyr_2208 0.69 -0.5
2,566,643 + Psyr_2208 0.69 +1.3
2,566,644 - Psyr_2208 0.69 +0.3
2,566,664 + Psyr_2208 0.71 -0.3
2,566,665 - Psyr_2208 0.71 -0.5
2,566,739 + Psyr_2208 0.75 -0.8
2,566,767 - Psyr_2208 0.77 -1.7
2,566,811 + Psyr_2208 0.80 -0.7
2,566,846 - Psyr_2208 0.82 +1.0
2,566,907 + Psyr_2208 0.86 -1.1
2,566,907 + Psyr_2208 0.86 +2.0
2,566,908 - Psyr_2208 0.86 +0.0
2,566,908 - Psyr_2208 0.86 +1.7
2,566,908 - Psyr_2208 0.86 +1.6
2,567,073 - -0.1
2,567,302 - Psyr_2209 0.13 +0.3
2,567,481 + Psyr_2209 0.31 -0.3
2,567,482 - Psyr_2209 0.31 +0.8
2,567,494 - Psyr_2209 0.33 -0.2
2,567,691 + Psyr_2209 0.53 +1.7
2,567,745 - Psyr_2209 0.58 +1.6
2,567,745 - Psyr_2209 0.58 +0.5
2,567,818 - Psyr_2209 0.66 -0.0
2,568,364 - Psyr_2210 0.14 -0.3
2,568,537 + Psyr_2210 0.32 +0.8
2,568,537 + Psyr_2210 0.32 +0.1
2,568,537 + Psyr_2210 0.32 +0.3
2,568,538 - -0.5
2,568,977 - Psyr_2210 0.78 -0.1
2,569,012 + Psyr_2210 0.82 +0.1
2,569,013 - Psyr_2210 0.82 -0.0

Or see this region's nucleotide sequence