Experiment: KB with Flavone 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1721 and Psyr_1722 are separated by 209 nucleotides Psyr_1722 and Psyr_1723 are separated by 47 nucleotides Psyr_1723 and Psyr_1724 are separated by 367 nucleotides
Psyr_1721: Psyr_1721 - moxR protein, putative, at 1,950,436 to 1,951,395
_1721
Psyr_1722: Psyr_1722 - Amidohydrolase 2, at 1,951,605 to 1,952,351
_1722
Psyr_1723: Psyr_1723 - conserved hypothetical protein, at 1,952,399 to 1,952,758
_1723
Psyr_1724: Psyr_1724 - glutamate dehydrogenase (NAD), at 1,953,126 to 1,957,982
_1724
Position (kb) 1951
1952
1953 Strain fitness (log2 ratio) -1
0
1
2 at 1950.722 kb on + strand, within Psyr_1721 at 1950.722 kb on + strand, within Psyr_1721 at 1950.723 kb on - strand, within Psyr_1721 at 1950.723 kb on - strand, within Psyr_1721 at 1950.746 kb on + strand, within Psyr_1721 at 1950.746 kb on + strand, within Psyr_1721 at 1950.746 kb on + strand, within Psyr_1721 at 1950.747 kb on - strand, within Psyr_1721 at 1950.747 kb on - strand, within Psyr_1721 at 1950.747 kb on - strand, within Psyr_1721 at 1950.995 kb on + strand, within Psyr_1721 at 1950.995 kb on + strand, within Psyr_1721 at 1950.995 kb on + strand, within Psyr_1721 at 1950.996 kb on - strand, within Psyr_1721 at 1950.996 kb on - strand, within Psyr_1721 at 1951.455 kb on + strand at 1951.455 kb on + strand at 1951.531 kb on + strand at 1951.532 kb on - strand at 1951.532 kb on - strand at 1951.532 kb on - strand at 1951.532 kb on - strand at 1951.539 kb on + strand at 1951.539 kb on + strand at 1951.547 kb on + strand at 1951.548 kb on - strand at 1951.570 kb on + strand at 1951.570 kb on + strand at 1951.571 kb on - strand at 1951.571 kb on - strand at 1951.571 kb on - strand at 1951.571 kb on - strand at 1951.571 kb on - strand at 1951.833 kb on + strand, within Psyr_1722 at 1951.960 kb on + strand, within Psyr_1722 at 1951.960 kb on + strand, within Psyr_1722 at 1951.960 kb on + strand, within Psyr_1722 at 1951.961 kb on - strand, within Psyr_1722 at 1951.961 kb on - strand, within Psyr_1722 at 1951.961 kb on - strand, within Psyr_1722 at 1952.174 kb on - strand, within Psyr_1722 at 1952.251 kb on + strand, within Psyr_1722 at 1952.418 kb on + strand at 1952.419 kb on - strand at 1952.419 kb on - strand at 1952.448 kb on - strand at 1952.709 kb on + strand, within Psyr_1723 at 1952.818 kb on + strand at 1952.818 kb on + strand at 1952.818 kb on + strand at 1952.844 kb on + strand at 1952.845 kb on - strand at 1952.854 kb on - strand at 1952.874 kb on + strand at 1952.874 kb on + strand at 1952.875 kb on - strand at 1952.875 kb on - strand at 1952.875 kb on - strand at 1952.875 kb on - strand at 1952.939 kb on + strand at 1952.939 kb on + strand at 1952.978 kb on + strand at 1952.978 kb on + strand at 1952.978 kb on + strand at 1952.979 kb on - strand at 1952.979 kb on - strand at 1952.979 kb on - strand at 1952.979 kb on - strand at 1953.013 kb on + strand at 1953.013 kb on + strand at 1953.014 kb on - strand at 1953.014 kb on - strand at 1953.014 kb on - strand at 1953.014 kb on - strand at 1953.014 kb on - strand at 1953.018 kb on + strand at 1953.018 kb on + strand at 1953.018 kb on + strand at 1953.018 kb on + strand at 1953.019 kb on - strand at 1953.019 kb on - strand at 1953.024 kb on + strand at 1953.024 kb on + strand at 1953.102 kb on - strand at 1953.119 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Flavone 0.125 mg/ml remove 1,950,722 + Psyr_1721 0.30 +1.0 1,950,722 + Psyr_1721 0.30 +0.4 1,950,723 - Psyr_1721 0.30 +1.1 1,950,723 - Psyr_1721 0.30 +0.1 1,950,746 + Psyr_1721 0.32 +0.1 1,950,746 + Psyr_1721 0.32 +1.0 1,950,746 + Psyr_1721 0.32 -0.0 1,950,747 - Psyr_1721 0.32 +0.4 1,950,747 - Psyr_1721 0.32 +1.4 1,950,747 - Psyr_1721 0.32 +1.4 1,950,995 + Psyr_1721 0.58 -0.2 1,950,995 + Psyr_1721 0.58 +0.4 1,950,995 + Psyr_1721 0.58 +0.5 1,950,996 - Psyr_1721 0.58 +0.2 1,950,996 - Psyr_1721 0.58 -0.0 1,951,455 + +1.6 1,951,455 + -0.1 1,951,531 + -0.3 1,951,532 - -0.6 1,951,532 - +0.4 1,951,532 - +0.2 1,951,532 - +1.1 1,951,539 + -0.3 1,951,539 + +0.4 1,951,547 + +0.6 1,951,548 - -1.0 1,951,570 + +0.6 1,951,570 + +0.9 1,951,571 - -1.3 1,951,571 - -0.2 1,951,571 - +0.1 1,951,571 - +1.0 1,951,571 - +0.9 1,951,833 + Psyr_1722 0.31 +1.4 1,951,960 + Psyr_1722 0.48 +1.8 1,951,960 + Psyr_1722 0.48 +1.3 1,951,960 + Psyr_1722 0.48 +1.1 1,951,961 - Psyr_1722 0.48 -0.9 1,951,961 - Psyr_1722 0.48 -0.9 1,951,961 - Psyr_1722 0.48 +0.7 1,952,174 - Psyr_1722 0.76 -0.2 1,952,251 + Psyr_1722 0.86 -1.6 1,952,418 + +0.5 1,952,419 - +0.2 1,952,419 - -0.5 1,952,448 - -1.2 1,952,709 + Psyr_1723 0.86 +0.2 1,952,818 + +0.2 1,952,818 + +1.1 1,952,818 + +0.7 1,952,844 + +0.4 1,952,845 - +0.0 1,952,854 - -0.3 1,952,874 + +0.7 1,952,874 + -0.4 1,952,875 - -1.0 1,952,875 - -0.0 1,952,875 - -0.7 1,952,875 - +0.4 1,952,939 + +1.1 1,952,939 + -0.1 1,952,978 + +1.0 1,952,978 + +0.2 1,952,978 + +1.4 1,952,979 - +0.1 1,952,979 - -1.4 1,952,979 - -1.4 1,952,979 - +0.3 1,953,013 + -0.5 1,953,013 + +0.7 1,953,014 - -1.2 1,953,014 - -0.7 1,953,014 - -0.4 1,953,014 - +0.2 1,953,014 - +0.4 1,953,018 + +1.4 1,953,018 + -1.5 1,953,018 + +0.4 1,953,018 + -0.4 1,953,019 - +0.5 1,953,019 - +0.1 1,953,024 + -0.8 1,953,024 + +1.4 1,953,102 - -0.5 1,953,119 - -0.3
Or see this region's nucleotide sequence