Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1689

Experiment: KB with Flavone 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1687 and Psyr_1688 are separated by 28 nucleotidesPsyr_1688 and Psyr_1689 are separated by 29 nucleotidesPsyr_1689 and Psyr_1690 are separated by 12 nucleotides Psyr_1687: Psyr_1687 - Rhomboid-like protein, at 1,895,737 to 1,896,609 _1687 Psyr_1688: Psyr_1688 - Protein of unknown function DUF1315, at 1,896,638 to 1,896,898 _1688 Psyr_1689: Psyr_1689 - conserved hypothetical protein, at 1,896,928 to 1,897,728 _1689 Psyr_1690: Psyr_1690 - Peptidase M1, membrane alanine aminopeptidase, at 1,897,741 to 1,900,407 _1690 Position (kb) 1896 1897 1898Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1895.965 kb on + strand, within Psyr_1687at 1895.965 kb on + strand, within Psyr_1687at 1895.965 kb on + strand, within Psyr_1687at 1895.965 kb on + strand, within Psyr_1687at 1895.965 kb on + strand, within Psyr_1687at 1895.966 kb on - strand, within Psyr_1687at 1895.993 kb on + strand, within Psyr_1687at 1896.332 kb on - strand, within Psyr_1687at 1896.379 kb on + strand, within Psyr_1687at 1896.379 kb on + strand, within Psyr_1687at 1896.379 kb on + strand, within Psyr_1687at 1896.607 kb on + strandat 1896.614 kb on - strandat 1896.650 kb on - strandat 1896.650 kb on - strandat 1896.650 kb on - strandat 1896.652 kb on - strandat 1896.684 kb on - strand, within Psyr_1688at 1896.684 kb on - strand, within Psyr_1688at 1896.684 kb on - strand, within Psyr_1688at 1896.684 kb on - strand, within Psyr_1688at 1896.964 kb on + strandat 1897.084 kb on + strand, within Psyr_1689at 1897.096 kb on + strand, within Psyr_1689at 1897.231 kb on + strand, within Psyr_1689at 1897.231 kb on + strand, within Psyr_1689at 1897.231 kb on + strand, within Psyr_1689at 1897.535 kb on + strand, within Psyr_1689at 1897.535 kb on + strand, within Psyr_1689at 1897.536 kb on - strand, within Psyr_1689at 1897.536 kb on - strand, within Psyr_1689at 1897.658 kb on - strandat 1897.658 kb on - strandat 1897.696 kb on + strandat 1897.697 kb on - strandat 1897.697 kb on - strandat 1897.706 kb on - strandat 1897.706 kb on - strandat 1897.706 kb on - strandat 1897.726 kb on + strandat 1897.726 kb on + strandat 1897.726 kb on + strandat 1897.726 kb on + strandat 1897.726 kb on + strandat 1897.727 kb on - strandat 1897.727 kb on - strandat 1897.768 kb on + strandat 1897.780 kb on + strandat 1897.781 kb on - strandat 1897.796 kb on - strandat 1898.086 kb on + strand, within Psyr_1690at 1898.086 kb on + strand, within Psyr_1690at 1898.086 kb on + strand, within Psyr_1690at 1898.086 kb on + strand, within Psyr_1690at 1898.086 kb on + strand, within Psyr_1690at 1898.086 kb on + strand, within Psyr_1690at 1898.146 kb on + strand, within Psyr_1690at 1898.146 kb on + strand, within Psyr_1690at 1898.146 kb on + strand, within Psyr_1690at 1898.146 kb on + strand, within Psyr_1690at 1898.146 kb on + strand, within Psyr_1690at 1898.146 kb on + strand, within Psyr_1690at 1898.146 kb on + strand, within Psyr_1690at 1898.146 kb on + strand, within Psyr_1690at 1898.147 kb on - strand, within Psyr_1690at 1898.147 kb on - strand, within Psyr_1690at 1898.147 kb on - strand, within Psyr_1690at 1898.147 kb on - strand, within Psyr_1690at 1898.147 kb on - strand, within Psyr_1690at 1898.147 kb on - strand, within Psyr_1690at 1898.147 kb on - strand, within Psyr_1690at 1898.147 kb on - strand, within Psyr_1690at 1898.147 kb on - strand, within Psyr_1690at 1898.147 kb on - strand, within Psyr_1690at 1898.147 kb on - strand, within Psyr_1690at 1898.149 kb on + strand, within Psyr_1690at 1898.367 kb on + strand, within Psyr_1690at 1898.367 kb on + strand, within Psyr_1690at 1898.368 kb on - strand, within Psyr_1690at 1898.368 kb on - strand, within Psyr_1690at 1898.395 kb on - strand, within Psyr_1690at 1898.395 kb on - strand, within Psyr_1690at 1898.398 kb on + strand, within Psyr_1690at 1898.398 kb on + strand, within Psyr_1690at 1898.398 kb on + strand, within Psyr_1690at 1898.398 kb on + strand, within Psyr_1690at 1898.399 kb on - strand, within Psyr_1690at 1898.479 kb on + strand, within Psyr_1690at 1898.479 kb on + strand, within Psyr_1690at 1898.479 kb on + strand, within Psyr_1690at 1898.565 kb on + strand, within Psyr_1690at 1898.566 kb on - strand, within Psyr_1690at 1898.566 kb on - strand, within Psyr_1690at 1898.653 kb on + strand, within Psyr_1690at 1898.653 kb on + strand, within Psyr_1690

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Flavone 0.125 mg/ml
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1,895,965 + Psyr_1687 0.26 +1.7
1,895,965 + Psyr_1687 0.26 +0.5
1,895,965 + Psyr_1687 0.26 +0.3
1,895,965 + Psyr_1687 0.26 +0.7
1,895,965 + Psyr_1687 0.26 +1.6
1,895,966 - Psyr_1687 0.26 -0.5
1,895,993 + Psyr_1687 0.29 -1.8
1,896,332 - Psyr_1687 0.68 +3.8
1,896,379 + Psyr_1687 0.74 +3.0
1,896,379 + Psyr_1687 0.74 +0.8
1,896,379 + Psyr_1687 0.74 -0.6
1,896,607 + +1.3
1,896,614 - -0.7
1,896,650 - -0.6
1,896,650 - -0.5
1,896,650 - +0.8
1,896,652 - -1.6
1,896,684 - Psyr_1688 0.18 -0.2
1,896,684 - Psyr_1688 0.18 -0.6
1,896,684 - Psyr_1688 0.18 -0.4
1,896,684 - Psyr_1688 0.18 +0.4
1,896,964 + +1.4
1,897,084 + Psyr_1689 0.19 +0.3
1,897,096 + Psyr_1689 0.21 +0.2
1,897,231 + Psyr_1689 0.38 +0.6
1,897,231 + Psyr_1689 0.38 +0.2
1,897,231 + Psyr_1689 0.38 +2.5
1,897,535 + Psyr_1689 0.76 +0.7
1,897,535 + Psyr_1689 0.76 +0.7
1,897,536 - Psyr_1689 0.76 -0.5
1,897,536 - Psyr_1689 0.76 +0.6
1,897,658 - -0.2
1,897,658 - +1.7
1,897,696 + +1.4
1,897,697 - -0.4
1,897,697 - +0.6
1,897,706 - +0.9
1,897,706 - +0.1
1,897,706 - -0.7
1,897,726 + +0.2
1,897,726 + -0.1
1,897,726 + +0.8
1,897,726 + +1.2
1,897,726 + -1.0
1,897,727 - +2.2
1,897,727 - +0.4
1,897,768 + -1.7
1,897,780 + -0.3
1,897,781 - +3.2
1,897,796 - -0.3
1,898,086 + Psyr_1690 0.13 +0.5
1,898,086 + Psyr_1690 0.13 -0.1
1,898,086 + Psyr_1690 0.13 +0.7
1,898,086 + Psyr_1690 0.13 -0.2
1,898,086 + Psyr_1690 0.13 -1.0
1,898,086 + Psyr_1690 0.13 +0.3
1,898,146 + Psyr_1690 0.15 +1.5
1,898,146 + Psyr_1690 0.15 -0.3
1,898,146 + Psyr_1690 0.15 -0.1
1,898,146 + Psyr_1690 0.15 +0.7
1,898,146 + Psyr_1690 0.15 +1.4
1,898,146 + Psyr_1690 0.15 +0.9
1,898,146 + Psyr_1690 0.15 -0.5
1,898,146 + Psyr_1690 0.15 -0.3
1,898,147 - Psyr_1690 0.15 +0.1
1,898,147 - Psyr_1690 0.15 +0.2
1,898,147 - Psyr_1690 0.15 +0.7
1,898,147 - Psyr_1690 0.15 +0.3
1,898,147 - Psyr_1690 0.15 -0.1
1,898,147 - Psyr_1690 0.15 -0.3
1,898,147 - Psyr_1690 0.15 +1.4
1,898,147 - Psyr_1690 0.15 +0.0
1,898,147 - Psyr_1690 0.15 -0.3
1,898,147 - Psyr_1690 0.15 -0.2
1,898,147 - Psyr_1690 0.15 +2.7
1,898,149 + Psyr_1690 0.15 -0.3
1,898,367 + Psyr_1690 0.23 -1.3
1,898,367 + Psyr_1690 0.23 +0.3
1,898,368 - Psyr_1690 0.24 +0.1
1,898,368 - Psyr_1690 0.24 -1.6
1,898,395 - Psyr_1690 0.25 -0.2
1,898,395 - Psyr_1690 0.25 -0.0
1,898,398 + Psyr_1690 0.25 +1.3
1,898,398 + Psyr_1690 0.25 +0.7
1,898,398 + Psyr_1690 0.25 +0.4
1,898,398 + Psyr_1690 0.25 +1.4
1,898,399 - Psyr_1690 0.25 -0.1
1,898,479 + Psyr_1690 0.28 -0.5
1,898,479 + Psyr_1690 0.28 +0.4
1,898,479 + Psyr_1690 0.28 -0.3
1,898,565 + Psyr_1690 0.31 -1.2
1,898,566 - Psyr_1690 0.31 +0.6
1,898,566 - Psyr_1690 0.31 +0.2
1,898,653 + Psyr_1690 0.34 -0.2
1,898,653 + Psyr_1690 0.34 -1.4

Or see this region's nucleotide sequence