Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1312

Experiment: KB with Flavone 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1311 and Psyr_1312 are separated by 91 nucleotidesPsyr_1312 and Psyr_1313 are separated by 134 nucleotides Psyr_1311: Psyr_1311 - Lysyl-tRNA synthetase, class-2, at 1,488,289 to 1,489,791 _1311 Psyr_1312: Psyr_1312 - transcriptional regulator, TetR family, at 1,489,883 to 1,490,608 _1312 Psyr_1313: Psyr_1313 - conserved hypothetical protein, at 1,490,743 to 1,492,020 _1313 Position (kb) 1489 1490 1491Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1489.868 kb on + strandat 1489.868 kb on + strandat 1489.868 kb on + strandat 1489.868 kb on + strandat 1489.868 kb on + strandat 1489.868 kb on + strandat 1489.869 kb on - strandat 1489.869 kb on - strandat 1489.869 kb on - strandat 1489.869 kb on - strandat 1489.869 kb on - strandat 1489.869 kb on - strandat 1489.870 kb on + strandat 1489.871 kb on - strandat 1489.871 kb on - strandat 1489.871 kb on - strandat 1489.871 kb on - strandat 1489.943 kb on + strandat 1489.943 kb on + strandat 1489.943 kb on + strandat 1489.944 kb on - strandat 1489.944 kb on - strandat 1489.944 kb on - strandat 1489.944 kb on - strandat 1490.096 kb on + strand, within Psyr_1312at 1490.096 kb on + strand, within Psyr_1312at 1490.096 kb on + strand, within Psyr_1312at 1490.097 kb on - strand, within Psyr_1312at 1490.097 kb on - strand, within Psyr_1312at 1490.097 kb on - strand, within Psyr_1312at 1490.097 kb on - strand, within Psyr_1312at 1490.097 kb on - strand, within Psyr_1312at 1490.097 kb on - strand, within Psyr_1312at 1490.097 kb on - strand, within Psyr_1312at 1490.099 kb on + strand, within Psyr_1312at 1490.099 kb on + strand, within Psyr_1312at 1490.099 kb on + strandat 1490.099 kb on + strand, within Psyr_1312at 1490.099 kb on + strand, within Psyr_1312at 1490.099 kb on + strand, within Psyr_1312at 1490.100 kb on - strand, within Psyr_1312at 1490.100 kb on - strand, within Psyr_1312at 1490.100 kb on - strand, within Psyr_1312at 1490.100 kb on - strand, within Psyr_1312at 1490.100 kb on - strand, within Psyr_1312at 1490.100 kb on - strand, within Psyr_1312at 1490.100 kb on - strand, within Psyr_1312at 1490.100 kb on - strand, within Psyr_1312at 1490.100 kb on - strand, within Psyr_1312at 1490.144 kb on + strand, within Psyr_1312at 1490.144 kb on + strand, within Psyr_1312at 1490.144 kb on + strand, within Psyr_1312at 1490.144 kb on + strand, within Psyr_1312at 1490.144 kb on + strand, within Psyr_1312at 1490.144 kb on + strand, within Psyr_1312at 1490.145 kb on - strand, within Psyr_1312at 1490.145 kb on - strand, within Psyr_1312at 1490.145 kb on - strand, within Psyr_1312at 1490.145 kb on - strand, within Psyr_1312at 1490.145 kb on - strand, within Psyr_1312at 1490.145 kb on - strand, within Psyr_1312at 1490.145 kb on - strand, within Psyr_1312at 1490.145 kb on - strand, within Psyr_1312at 1490.148 kb on + strand, within Psyr_1312at 1490.148 kb on + strand, within Psyr_1312at 1490.148 kb on + strand, within Psyr_1312at 1490.148 kb on + strand, within Psyr_1312at 1490.148 kb on + strand, within Psyr_1312at 1490.149 kb on - strand, within Psyr_1312at 1490.149 kb on - strand, within Psyr_1312at 1490.149 kb on - strand, within Psyr_1312at 1490.149 kb on - strand, within Psyr_1312at 1490.149 kb on - strand, within Psyr_1312at 1490.197 kb on + strand, within Psyr_1312at 1490.197 kb on + strand, within Psyr_1312at 1490.197 kb on + strand, within Psyr_1312at 1490.198 kb on - strand, within Psyr_1312at 1490.198 kb on - strand, within Psyr_1312at 1490.198 kb on - strand, within Psyr_1312at 1490.198 kb on - strand, within Psyr_1312at 1490.272 kb on + strand, within Psyr_1312at 1490.273 kb on - strand, within Psyr_1312at 1490.273 kb on - strand, within Psyr_1312at 1490.288 kb on - strand, within Psyr_1312at 1490.318 kb on + strand, within Psyr_1312at 1490.318 kb on + strand, within Psyr_1312at 1490.319 kb on - strand, within Psyr_1312at 1490.342 kb on + strand, within Psyr_1312at 1490.342 kb on + strand, within Psyr_1312at 1490.343 kb on - strand, within Psyr_1312at 1490.343 kb on - strand, within Psyr_1312at 1490.343 kb on - strand, within Psyr_1312at 1490.343 kb on - strand, within Psyr_1312at 1490.434 kb on - strand, within Psyr_1312at 1490.499 kb on - strand, within Psyr_1312at 1490.610 kb on + strandat 1490.610 kb on + strandat 1490.610 kb on + strandat 1490.610 kb on + strandat 1490.611 kb on - strandat 1490.611 kb on - strandat 1490.611 kb on - strandat 1490.611 kb on - strandat 1490.611 kb on - strandat 1490.612 kb on + strandat 1490.612 kb on + strandat 1490.612 kb on + strandat 1490.612 kb on + strandat 1490.612 kb on + strandat 1490.612 kb on + strandat 1490.613 kb on - strandat 1490.613 kb on - strandat 1490.613 kb on - strandat 1490.613 kb on - strandat 1490.675 kb on - strandat 1490.675 kb on - strandat 1490.678 kb on + strandat 1490.752 kb on + strandat 1490.752 kb on + strandat 1490.763 kb on + strandat 1490.763 kb on + strandat 1490.764 kb on - strandat 1490.764 kb on - strandat 1490.764 kb on - strandat 1490.826 kb on + strandat 1490.826 kb on + strandat 1490.827 kb on - strandat 1490.827 kb on - strandat 1490.827 kb on - strandat 1490.827 kb on - strandat 1490.899 kb on + strand, within Psyr_1313at 1490.902 kb on + strand, within Psyr_1313at 1491.051 kb on + strand, within Psyr_1313at 1491.051 kb on + strand, within Psyr_1313at 1491.051 kb on + strand, within Psyr_1313at 1491.052 kb on - strand, within Psyr_1313at 1491.052 kb on - strand, within Psyr_1313at 1491.052 kb on - strand, within Psyr_1313at 1491.052 kb on - strand, within Psyr_1313at 1491.052 kb on - strand, within Psyr_1313at 1491.103 kb on + strand, within Psyr_1313at 1491.175 kb on + strand, within Psyr_1313at 1491.352 kb on + strand, within Psyr_1313at 1491.353 kb on - strand, within Psyr_1313at 1491.353 kb on - strand, within Psyr_1313at 1491.353 kb on - strand, within Psyr_1313at 1491.353 kb on - strand, within Psyr_1313at 1491.353 kb on - strand, within Psyr_1313at 1491.353 kb on - strand, within Psyr_1313at 1491.353 kb on - strand, within Psyr_1313at 1491.395 kb on + strand, within Psyr_1313at 1491.395 kb on + strand, within Psyr_1313at 1491.395 kb on + strand, within Psyr_1313at 1491.396 kb on - strand, within Psyr_1313at 1491.396 kb on - strand, within Psyr_1313at 1491.396 kb on - strand, within Psyr_1313at 1491.396 kb on - strand, within Psyr_1313at 1491.396 kb on - strand, within Psyr_1313at 1491.396 kb on - strand, within Psyr_1313at 1491.396 kb on - strand, within Psyr_1313

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Flavone 0.125 mg/ml
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1,489,868 + +0.3
1,489,868 + -1.8
1,489,868 + -0.2
1,489,868 + +0.9
1,489,868 + +1.3
1,489,868 + +0.5
1,489,869 - +0.6
1,489,869 - +2.1
1,489,869 - +0.1
1,489,869 - +0.5
1,489,869 - +0.3
1,489,869 - +0.0
1,489,870 + +0.9
1,489,871 - -0.1
1,489,871 - +0.9
1,489,871 - +1.4
1,489,871 - -0.1
1,489,943 + +0.5
1,489,943 + +1.2
1,489,943 + -0.0
1,489,944 - +0.1
1,489,944 - +0.5
1,489,944 - +0.7
1,489,944 - +0.5
1,490,096 + Psyr_1312 0.29 -0.0
1,490,096 + Psyr_1312 0.29 +0.5
1,490,096 + Psyr_1312 0.29 +1.5
1,490,097 - Psyr_1312 0.29 +0.7
1,490,097 - Psyr_1312 0.29 +0.9
1,490,097 - Psyr_1312 0.29 +2.1
1,490,097 - Psyr_1312 0.29 +1.1
1,490,097 - Psyr_1312 0.29 +0.8
1,490,097 - Psyr_1312 0.29 +0.5
1,490,097 - Psyr_1312 0.29 +0.8
1,490,099 + Psyr_1312 0.30 +2.3
1,490,099 + Psyr_1312 0.30 +0.5
1,490,099 + -0.8
1,490,099 + Psyr_1312 0.30 -0.2
1,490,099 + Psyr_1312 0.30 +0.3
1,490,099 + Psyr_1312 0.30 +0.6
1,490,100 - Psyr_1312 0.30 -0.5
1,490,100 - Psyr_1312 0.30 +0.7
1,490,100 - Psyr_1312 0.30 +1.0
1,490,100 - Psyr_1312 0.30 +0.5
1,490,100 - Psyr_1312 0.30 -0.1
1,490,100 - Psyr_1312 0.30 +0.2
1,490,100 - Psyr_1312 0.30 -1.4
1,490,100 - Psyr_1312 0.30 -0.7
1,490,100 - Psyr_1312 0.30 -0.1
1,490,144 + Psyr_1312 0.36 -0.2
1,490,144 + Psyr_1312 0.36 +0.9
1,490,144 + Psyr_1312 0.36 -1.1
1,490,144 + Psyr_1312 0.36 +0.7
1,490,144 + Psyr_1312 0.36 +0.5
1,490,144 + Psyr_1312 0.36 +0.1
1,490,145 - Psyr_1312 0.36 +0.6
1,490,145 - Psyr_1312 0.36 +1.1
1,490,145 - Psyr_1312 0.36 -1.0
1,490,145 - Psyr_1312 0.36 +0.8
1,490,145 - Psyr_1312 0.36 +0.1
1,490,145 - Psyr_1312 0.36 -0.5
1,490,145 - Psyr_1312 0.36 -1.6
1,490,145 - Psyr_1312 0.36 +0.1
1,490,148 + Psyr_1312 0.37 +0.5
1,490,148 + Psyr_1312 0.37 +0.1
1,490,148 + Psyr_1312 0.37 +0.2
1,490,148 + Psyr_1312 0.37 +0.2
1,490,148 + Psyr_1312 0.37 +1.7
1,490,149 - Psyr_1312 0.37 -0.4
1,490,149 - Psyr_1312 0.37 -0.1
1,490,149 - Psyr_1312 0.37 -0.3
1,490,149 - Psyr_1312 0.37 +0.2
1,490,149 - Psyr_1312 0.37 +0.9
1,490,197 + Psyr_1312 0.43 +0.8
1,490,197 + Psyr_1312 0.43 -0.7
1,490,197 + Psyr_1312 0.43 +2.5
1,490,198 - Psyr_1312 0.43 -0.3
1,490,198 - Psyr_1312 0.43 +0.4
1,490,198 - Psyr_1312 0.43 -0.2
1,490,198 - Psyr_1312 0.43 +1.4
1,490,272 + Psyr_1312 0.54 +0.4
1,490,273 - Psyr_1312 0.54 +0.5
1,490,273 - Psyr_1312 0.54 +0.6
1,490,288 - Psyr_1312 0.56 -0.6
1,490,318 + Psyr_1312 0.60 -0.4
1,490,318 + Psyr_1312 0.60 +1.2
1,490,319 - Psyr_1312 0.60 -1.6
1,490,342 + Psyr_1312 0.63 +0.5
1,490,342 + Psyr_1312 0.63 +2.3
1,490,343 - Psyr_1312 0.63 -0.7
1,490,343 - Psyr_1312 0.63 +0.8
1,490,343 - Psyr_1312 0.63 +2.1
1,490,343 - Psyr_1312 0.63 +0.2
1,490,434 - Psyr_1312 0.76 +0.4
1,490,499 - Psyr_1312 0.85 +0.8
1,490,610 + -0.5
1,490,610 + +0.6
1,490,610 + -0.2
1,490,610 + -0.2
1,490,611 - +0.0
1,490,611 - -0.3
1,490,611 - +0.1
1,490,611 - -0.2
1,490,611 - +0.8
1,490,612 + +0.1
1,490,612 + +0.9
1,490,612 + +1.2
1,490,612 + +0.5
1,490,612 + -0.1
1,490,612 + +0.2
1,490,613 - +0.5
1,490,613 - +0.1
1,490,613 - -0.6
1,490,613 - -0.2
1,490,675 - +1.9
1,490,675 - -0.3
1,490,678 + +0.1
1,490,752 + -0.9
1,490,752 + -0.3
1,490,763 + +0.5
1,490,763 + -2.6
1,490,764 - +0.3
1,490,764 - +0.9
1,490,764 - -0.1
1,490,826 + -1.5
1,490,826 + -0.1
1,490,827 - -0.1
1,490,827 - -0.5
1,490,827 - +1.4
1,490,827 - +0.1
1,490,899 + Psyr_1313 0.12 +3.7
1,490,902 + Psyr_1313 0.12 +0.1
1,491,051 + Psyr_1313 0.24 +0.0
1,491,051 + Psyr_1313 0.24 -0.0
1,491,051 + Psyr_1313 0.24 -0.9
1,491,052 - Psyr_1313 0.24 +0.1
1,491,052 - Psyr_1313 0.24 +0.3
1,491,052 - Psyr_1313 0.24 -1.2
1,491,052 - Psyr_1313 0.24 -0.5
1,491,052 - Psyr_1313 0.24 +1.0
1,491,103 + Psyr_1313 0.28 -0.9
1,491,175 + Psyr_1313 0.34 -0.1
1,491,352 + Psyr_1313 0.48 -0.9
1,491,353 - Psyr_1313 0.48 +0.2
1,491,353 - Psyr_1313 0.48 +1.5
1,491,353 - Psyr_1313 0.48 +0.4
1,491,353 - Psyr_1313 0.48 +0.2
1,491,353 - Psyr_1313 0.48 +1.3
1,491,353 - Psyr_1313 0.48 +1.2
1,491,353 - Psyr_1313 0.48 +0.9
1,491,395 + Psyr_1313 0.51 +2.6
1,491,395 + Psyr_1313 0.51 -1.1
1,491,395 + Psyr_1313 0.51 -0.6
1,491,396 - Psyr_1313 0.51 +0.2
1,491,396 - Psyr_1313 0.51 -1.3
1,491,396 - Psyr_1313 0.51 -0.7
1,491,396 - Psyr_1313 0.51 -1.0
1,491,396 - Psyr_1313 0.51 +0.0
1,491,396 - Psyr_1313 0.51 -0.5
1,491,396 - Psyr_1313 0.51 +0.2

Or see this region's nucleotide sequence