Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1270

Experiment: KB with Flavone 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1269 and Psyr_1270 are separated by 5 nucleotidesPsyr_1270 and Psyr_1271 are separated by 121 nucleotidesPsyr_1271 and Psyr_1272 are separated by 61 nucleotides Psyr_1269: Psyr_1269 - phosphoribosylformylglycinamidine synthase, at 1,433,337 to 1,437,233 _1269 Psyr_1270: Psyr_1270 - conserved hypothetical protein, at 1,437,239 to 1,437,550 _1270 Psyr_1271: Psyr_1271 - ErfK/YbiS/YcfS/YnhG, at 1,437,672 to 1,438,235 _1271 Psyr_1272: Psyr_1272 - NUDIX hydrolase, at 1,438,297 to 1,438,848 _1272 Position (kb) 1437 1438Strain fitness (log2 ratio) -1 0 1 2at 1436.442 kb on + strand, within Psyr_1269at 1436.443 kb on - strand, within Psyr_1269at 1436.632 kb on - strand, within Psyr_1269at 1437.137 kb on - strandat 1437.231 kb on + strandat 1437.231 kb on + strandat 1437.232 kb on - strandat 1437.232 kb on - strandat 1437.242 kb on + strandat 1437.242 kb on + strandat 1437.243 kb on - strandat 1437.329 kb on + strand, within Psyr_1270at 1437.522 kb on - strandat 1437.528 kb on + strandat 1437.528 kb on + strandat 1437.528 kb on + strandat 1437.529 kb on - strandat 1437.529 kb on - strandat 1437.529 kb on - strandat 1437.529 kb on - strandat 1437.717 kb on + strandat 1437.718 kb on - strandat 1437.781 kb on + strand, within Psyr_1271at 1437.781 kb on + strand, within Psyr_1271at 1437.781 kb on + strand, within Psyr_1271at 1437.782 kb on - strand, within Psyr_1271at 1437.782 kb on - strand, within Psyr_1271at 1437.910 kb on + strand, within Psyr_1271at 1437.910 kb on + strand, within Psyr_1271at 1437.910 kb on + strand, within Psyr_1271at 1437.910 kb on + strand, within Psyr_1271at 1437.910 kb on + strand, within Psyr_1271at 1437.910 kb on + strand, within Psyr_1271at 1437.910 kb on + strand, within Psyr_1271at 1437.911 kb on - strand, within Psyr_1271at 1437.911 kb on - strandat 1437.911 kb on - strand, within Psyr_1271at 1437.911 kb on - strand, within Psyr_1271at 1437.911 kb on - strand, within Psyr_1271at 1437.911 kb on - strand, within Psyr_1271at 1437.927 kb on - strand, within Psyr_1271at 1438.236 kb on + strandat 1438.253 kb on + strandat 1438.253 kb on + strandat 1438.253 kb on + strandat 1438.253 kb on + strandat 1438.339 kb on - strandat 1438.379 kb on + strand, within Psyr_1272at 1438.379 kb on + strand, within Psyr_1272at 1438.379 kb on + strand, within Psyr_1272at 1438.379 kb on + strand, within Psyr_1272at 1438.379 kb on + strand, within Psyr_1272at 1438.380 kb on - strand, within Psyr_1272at 1438.380 kb on - strand, within Psyr_1272at 1438.380 kb on - strand, within Psyr_1272at 1438.380 kb on - strand, within Psyr_1272at 1438.380 kb on - strand, within Psyr_1272at 1438.380 kb on - strand, within Psyr_1272at 1438.380 kb on - strand, within Psyr_1272at 1438.384 kb on + strand, within Psyr_1272at 1438.385 kb on - strand, within Psyr_1272at 1438.445 kb on - strand, within Psyr_1272at 1438.505 kb on + strand, within Psyr_1272at 1438.506 kb on - strand, within Psyr_1272at 1438.506 kb on - strand, within Psyr_1272at 1438.528 kb on - strand, within Psyr_1272at 1438.550 kb on + strand, within Psyr_1272

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Flavone 0.125 mg/ml
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1,436,442 + Psyr_1269 0.80 -1.3
1,436,443 - Psyr_1269 0.80 -0.2
1,436,632 - Psyr_1269 0.85 -0.0
1,437,137 - +1.9
1,437,231 + -1.5
1,437,231 + -0.2
1,437,232 - +0.5
1,437,232 - +0.8
1,437,242 + -1.5
1,437,242 + +0.3
1,437,243 - -0.2
1,437,329 + Psyr_1270 0.29 +0.9
1,437,522 - +0.2
1,437,528 + -0.9
1,437,528 + +0.7
1,437,528 + -1.2
1,437,529 - -0.2
1,437,529 - +1.5
1,437,529 - -0.5
1,437,529 - -0.1
1,437,717 + -0.4
1,437,718 - -0.5
1,437,781 + Psyr_1271 0.19 +0.9
1,437,781 + Psyr_1271 0.19 -0.1
1,437,781 + Psyr_1271 0.19 +0.7
1,437,782 - Psyr_1271 0.20 +0.6
1,437,782 - Psyr_1271 0.20 +0.5
1,437,910 + Psyr_1271 0.42 -0.1
1,437,910 + Psyr_1271 0.42 -0.7
1,437,910 + Psyr_1271 0.42 +0.7
1,437,910 + Psyr_1271 0.42 +0.5
1,437,910 + Psyr_1271 0.42 +0.1
1,437,910 + Psyr_1271 0.42 -0.0
1,437,910 + Psyr_1271 0.42 +1.1
1,437,911 - Psyr_1271 0.42 +0.5
1,437,911 - -0.1
1,437,911 - Psyr_1271 0.42 +1.9
1,437,911 - Psyr_1271 0.42 +0.1
1,437,911 - Psyr_1271 0.42 -0.0
1,437,911 - Psyr_1271 0.42 +0.4
1,437,927 - Psyr_1271 0.45 +0.4
1,438,236 + -0.1
1,438,253 + +0.2
1,438,253 + -1.1
1,438,253 + -0.3
1,438,253 + +1.5
1,438,339 - -0.2
1,438,379 + Psyr_1272 0.15 +1.4
1,438,379 + Psyr_1272 0.15 +1.8
1,438,379 + Psyr_1272 0.15 -0.6
1,438,379 + Psyr_1272 0.15 +0.8
1,438,379 + Psyr_1272 0.15 -0.4
1,438,380 - Psyr_1272 0.15 +2.1
1,438,380 - Psyr_1272 0.15 -0.6
1,438,380 - Psyr_1272 0.15 +0.1
1,438,380 - Psyr_1272 0.15 +0.3
1,438,380 - Psyr_1272 0.15 +0.7
1,438,380 - Psyr_1272 0.15 -0.1
1,438,380 - Psyr_1272 0.15 -0.3
1,438,384 + Psyr_1272 0.16 -0.8
1,438,385 - Psyr_1272 0.16 -0.3
1,438,445 - Psyr_1272 0.27 +0.9
1,438,505 + Psyr_1272 0.38 +0.3
1,438,506 - Psyr_1272 0.38 -1.0
1,438,506 - Psyr_1272 0.38 +0.2
1,438,528 - Psyr_1272 0.42 +0.8
1,438,550 + Psyr_1272 0.46 +0.2

Or see this region's nucleotide sequence