Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1118

Experiment: KB with Flavone 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1117 and Psyr_1118 are separated by 109 nucleotidesPsyr_1118 and Psyr_1119 are separated by 73 nucleotides Psyr_1117: Psyr_1117 - porin, OprB family, at 1,265,737 to 1,267,098 _1117 Psyr_1118: Psyr_1118 - Aldose 1-epimerase, at 1,267,208 to 1,268,083 _1118 Psyr_1119: Psyr_1119 - Helix-turn-helix protein RpiR:Sugar isomerase (SIS), at 1,268,157 to 1,269,023 _1119 Position (kb) 1267 1268 1269Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1266.208 kb on + strand, within Psyr_1117at 1266.208 kb on + strand, within Psyr_1117at 1266.208 kb on + strand, within Psyr_1117at 1266.209 kb on - strand, within Psyr_1117at 1266.209 kb on - strand, within Psyr_1117at 1266.322 kb on + strand, within Psyr_1117at 1266.322 kb on + strand, within Psyr_1117at 1266.322 kb on + strand, within Psyr_1117at 1266.322 kb on + strand, within Psyr_1117at 1266.322 kb on + strand, within Psyr_1117at 1266.323 kb on - strand, within Psyr_1117at 1266.323 kb on - strand, within Psyr_1117at 1266.323 kb on - strand, within Psyr_1117at 1266.328 kb on - strand, within Psyr_1117at 1266.330 kb on + strand, within Psyr_1117at 1266.330 kb on + strand, within Psyr_1117at 1266.330 kb on + strand, within Psyr_1117at 1266.331 kb on - strand, within Psyr_1117at 1266.331 kb on - strand, within Psyr_1117at 1266.337 kb on + strand, within Psyr_1117at 1266.338 kb on - strand, within Psyr_1117at 1266.348 kb on + strand, within Psyr_1117at 1266.349 kb on - strand, within Psyr_1117at 1266.376 kb on + strand, within Psyr_1117at 1266.376 kb on + strand, within Psyr_1117at 1266.376 kb on + strand, within Psyr_1117at 1266.377 kb on - strand, within Psyr_1117at 1266.377 kb on - strand, within Psyr_1117at 1266.377 kb on - strand, within Psyr_1117at 1266.377 kb on - strand, within Psyr_1117at 1266.377 kb on - strand, within Psyr_1117at 1266.377 kb on - strand, within Psyr_1117at 1266.397 kb on + strand, within Psyr_1117at 1266.398 kb on - strand, within Psyr_1117at 1266.398 kb on - strand, within Psyr_1117at 1266.398 kb on - strand, within Psyr_1117at 1266.398 kb on - strand, within Psyr_1117at 1266.415 kb on + strand, within Psyr_1117at 1266.416 kb on - strand, within Psyr_1117at 1266.556 kb on + strand, within Psyr_1117at 1266.556 kb on + strand, within Psyr_1117at 1266.556 kb on + strand, within Psyr_1117at 1266.556 kb on + strand, within Psyr_1117at 1266.556 kb on + strand, within Psyr_1117at 1266.556 kb on + strand, within Psyr_1117at 1266.556 kb on + strand, within Psyr_1117at 1266.556 kb on + strand, within Psyr_1117at 1266.557 kb on - strand, within Psyr_1117at 1266.557 kb on - strand, within Psyr_1117at 1266.586 kb on + strand, within Psyr_1117at 1266.587 kb on - strand, within Psyr_1117at 1266.772 kb on + strand, within Psyr_1117at 1266.772 kb on + strand, within Psyr_1117at 1266.773 kb on - strand, within Psyr_1117at 1266.773 kb on - strand, within Psyr_1117at 1266.773 kb on - strand, within Psyr_1117at 1266.793 kb on + strand, within Psyr_1117at 1266.793 kb on + strandat 1266.917 kb on - strand, within Psyr_1117at 1266.917 kb on - strand, within Psyr_1117at 1266.955 kb on + strand, within Psyr_1117at 1266.955 kb on + strand, within Psyr_1117at 1266.955 kb on + strand, within Psyr_1117at 1266.955 kb on + strand, within Psyr_1117at 1266.955 kb on + strand, within Psyr_1117at 1266.956 kb on - strand, within Psyr_1117at 1266.956 kb on - strand, within Psyr_1117at 1266.956 kb on - strand, within Psyr_1117at 1266.971 kb on - strandat 1266.973 kb on + strandat 1267.021 kb on + strandat 1267.021 kb on + strandat 1267.021 kb on + strandat 1267.022 kb on - strandat 1267.022 kb on - strandat 1267.022 kb on - strandat 1267.022 kb on - strandat 1267.022 kb on - strandat 1267.043 kb on + strandat 1267.044 kb on - strandat 1267.044 kb on - strandat 1267.100 kb on + strandat 1267.169 kb on - strandat 1267.280 kb on - strandat 1267.280 kb on - strandat 1267.315 kb on - strand, within Psyr_1118at 1267.475 kb on + strand, within Psyr_1118at 1267.709 kb on + strand, within Psyr_1118at 1267.710 kb on - strand, within Psyr_1118at 1267.769 kb on + strand, within Psyr_1118at 1268.141 kb on - strandat 1268.309 kb on + strand, within Psyr_1119at 1268.310 kb on - strand, within Psyr_1119at 1268.311 kb on + strand, within Psyr_1119at 1268.311 kb on + strand, within Psyr_1119at 1268.311 kb on + strand, within Psyr_1119at 1268.311 kb on + strand, within Psyr_1119at 1268.311 kb on + strand, within Psyr_1119at 1268.311 kb on + strand, within Psyr_1119at 1268.311 kb on + strand, within Psyr_1119at 1268.311 kb on + strand, within Psyr_1119at 1268.311 kb on + strand, within Psyr_1119at 1268.311 kb on + strand, within Psyr_1119at 1268.312 kb on - strand, within Psyr_1119at 1268.312 kb on - strand, within Psyr_1119at 1268.312 kb on - strand, within Psyr_1119at 1268.312 kb on - strand, within Psyr_1119at 1268.312 kb on - strand, within Psyr_1119at 1268.312 kb on - strand, within Psyr_1119at 1268.312 kb on - strand, within Psyr_1119at 1268.312 kb on - strand, within Psyr_1119at 1268.312 kb on - strand, within Psyr_1119at 1268.312 kb on - strand, within Psyr_1119at 1268.312 kb on - strand, within Psyr_1119at 1268.312 kb on - strand, within Psyr_1119at 1268.312 kb on - strand, within Psyr_1119at 1268.312 kb on - strand, within Psyr_1119at 1268.315 kb on + strand, within Psyr_1119at 1268.315 kb on + strand, within Psyr_1119at 1268.316 kb on - strand, within Psyr_1119at 1268.321 kb on + strand, within Psyr_1119at 1268.354 kb on + strand, within Psyr_1119at 1268.567 kb on + strand, within Psyr_1119at 1268.568 kb on - strand, within Psyr_1119at 1268.568 kb on - strand, within Psyr_1119at 1268.568 kb on - strand, within Psyr_1119at 1268.729 kb on + strand, within Psyr_1119at 1268.731 kb on + strand, within Psyr_1119at 1268.731 kb on + strand, within Psyr_1119at 1268.732 kb on - strand, within Psyr_1119at 1268.732 kb on - strand, within Psyr_1119at 1268.732 kb on - strand, within Psyr_1119at 1268.773 kb on + strand, within Psyr_1119at 1268.773 kb on + strand, within Psyr_1119at 1268.774 kb on - strand, within Psyr_1119at 1268.774 kb on - strand, within Psyr_1119at 1269.048 kb on + strandat 1269.049 kb on - strandat 1269.049 kb on - strandat 1269.073 kb on + strandat 1269.073 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Flavone 0.125 mg/ml
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1,266,208 + Psyr_1117 0.35 +0.0
1,266,208 + Psyr_1117 0.35 -0.7
1,266,208 + Psyr_1117 0.35 -0.3
1,266,209 - Psyr_1117 0.35 +2.2
1,266,209 - Psyr_1117 0.35 -1.0
1,266,322 + Psyr_1117 0.43 -0.2
1,266,322 + Psyr_1117 0.43 +0.6
1,266,322 + Psyr_1117 0.43 +2.3
1,266,322 + Psyr_1117 0.43 -0.7
1,266,322 + Psyr_1117 0.43 -0.9
1,266,323 - Psyr_1117 0.43 +0.6
1,266,323 - Psyr_1117 0.43 -0.7
1,266,323 - Psyr_1117 0.43 -0.1
1,266,328 - Psyr_1117 0.43 -0.5
1,266,330 + Psyr_1117 0.44 -3.1
1,266,330 + Psyr_1117 0.44 +0.2
1,266,330 + Psyr_1117 0.44 +1.5
1,266,331 - Psyr_1117 0.44 +0.2
1,266,331 - Psyr_1117 0.44 +1.3
1,266,337 + Psyr_1117 0.44 -0.9
1,266,338 - Psyr_1117 0.44 -0.4
1,266,348 + Psyr_1117 0.45 +0.6
1,266,349 - Psyr_1117 0.45 +1.4
1,266,376 + Psyr_1117 0.47 -1.1
1,266,376 + Psyr_1117 0.47 +1.4
1,266,376 + Psyr_1117 0.47 +0.2
1,266,377 - Psyr_1117 0.47 -1.1
1,266,377 - Psyr_1117 0.47 -0.9
1,266,377 - Psyr_1117 0.47 -0.0
1,266,377 - Psyr_1117 0.47 -0.3
1,266,377 - Psyr_1117 0.47 +0.6
1,266,377 - Psyr_1117 0.47 -1.4
1,266,397 + Psyr_1117 0.48 +0.3
1,266,398 - Psyr_1117 0.49 +2.8
1,266,398 - Psyr_1117 0.49 +0.8
1,266,398 - Psyr_1117 0.49 -0.2
1,266,398 - Psyr_1117 0.49 -0.8
1,266,415 + Psyr_1117 0.50 -0.7
1,266,416 - Psyr_1117 0.50 -0.2
1,266,556 + Psyr_1117 0.60 -0.2
1,266,556 + Psyr_1117 0.60 +1.1
1,266,556 + Psyr_1117 0.60 -1.3
1,266,556 + Psyr_1117 0.60 -1.7
1,266,556 + Psyr_1117 0.60 +0.5
1,266,556 + Psyr_1117 0.60 +0.2
1,266,556 + Psyr_1117 0.60 +1.1
1,266,556 + Psyr_1117 0.60 +0.8
1,266,557 - Psyr_1117 0.60 +0.6
1,266,557 - Psyr_1117 0.60 -0.4
1,266,586 + Psyr_1117 0.62 +0.8
1,266,587 - Psyr_1117 0.62 -0.1
1,266,772 + Psyr_1117 0.76 +2.8
1,266,772 + Psyr_1117 0.76 -0.2
1,266,773 - Psyr_1117 0.76 -1.1
1,266,773 - Psyr_1117 0.76 -0.0
1,266,773 - Psyr_1117 0.76 +0.3
1,266,793 + Psyr_1117 0.78 -0.1
1,266,793 + +0.6
1,266,917 - Psyr_1117 0.87 +0.7
1,266,917 - Psyr_1117 0.87 -0.4
1,266,955 + Psyr_1117 0.89 -0.1
1,266,955 + Psyr_1117 0.89 +2.5
1,266,955 + Psyr_1117 0.89 +0.4
1,266,955 + Psyr_1117 0.89 +0.4
1,266,955 + Psyr_1117 0.89 +0.7
1,266,956 - Psyr_1117 0.90 +1.6
1,266,956 - Psyr_1117 0.90 +2.2
1,266,956 - Psyr_1117 0.90 +2.2
1,266,971 - +0.5
1,266,973 + +0.0
1,267,021 + -0.5
1,267,021 + +0.1
1,267,021 + -0.2
1,267,022 - +1.2
1,267,022 - -0.5
1,267,022 - +1.3
1,267,022 - +0.5
1,267,022 - +1.1
1,267,043 + -1.0
1,267,044 - +0.5
1,267,044 - +1.6
1,267,100 + +0.0
1,267,169 - +0.1
1,267,280 - -0.7
1,267,280 - -0.4
1,267,315 - Psyr_1118 0.12 -0.9
1,267,475 + Psyr_1118 0.30 -0.6
1,267,709 + Psyr_1118 0.57 -0.0
1,267,710 - Psyr_1118 0.57 -0.3
1,267,769 + Psyr_1118 0.64 -0.7
1,268,141 - +0.5
1,268,309 + Psyr_1119 0.18 +0.2
1,268,310 - Psyr_1119 0.18 +1.0
1,268,311 + Psyr_1119 0.18 +1.1
1,268,311 + Psyr_1119 0.18 +0.8
1,268,311 + Psyr_1119 0.18 -2.1
1,268,311 + Psyr_1119 0.18 +1.8
1,268,311 + Psyr_1119 0.18 -0.9
1,268,311 + Psyr_1119 0.18 -0.0
1,268,311 + Psyr_1119 0.18 -0.2
1,268,311 + Psyr_1119 0.18 -0.3
1,268,311 + Psyr_1119 0.18 -0.5
1,268,311 + Psyr_1119 0.18 +0.2
1,268,312 - Psyr_1119 0.18 +0.6
1,268,312 - Psyr_1119 0.18 -0.9
1,268,312 - Psyr_1119 0.18 -0.5
1,268,312 - Psyr_1119 0.18 -0.1
1,268,312 - Psyr_1119 0.18 -1.4
1,268,312 - Psyr_1119 0.18 -0.6
1,268,312 - Psyr_1119 0.18 +0.9
1,268,312 - Psyr_1119 0.18 +0.0
1,268,312 - Psyr_1119 0.18 -0.2
1,268,312 - Psyr_1119 0.18 -0.7
1,268,312 - Psyr_1119 0.18 +0.1
1,268,312 - Psyr_1119 0.18 +0.3
1,268,312 - Psyr_1119 0.18 +1.0
1,268,312 - Psyr_1119 0.18 +0.3
1,268,315 + Psyr_1119 0.18 -0.9
1,268,315 + Psyr_1119 0.18 -0.2
1,268,316 - Psyr_1119 0.18 +0.5
1,268,321 + Psyr_1119 0.19 +0.4
1,268,354 + Psyr_1119 0.23 +0.3
1,268,567 + Psyr_1119 0.47 -1.0
1,268,568 - Psyr_1119 0.47 +0.1
1,268,568 - Psyr_1119 0.47 +1.8
1,268,568 - Psyr_1119 0.47 -0.2
1,268,729 + Psyr_1119 0.66 +0.1
1,268,731 + Psyr_1119 0.66 +0.8
1,268,731 + Psyr_1119 0.66 -0.7
1,268,732 - Psyr_1119 0.66 +1.6
1,268,732 - Psyr_1119 0.66 -0.1
1,268,732 - Psyr_1119 0.66 -2.0
1,268,773 + Psyr_1119 0.71 +2.5
1,268,773 + Psyr_1119 0.71 +0.3
1,268,774 - Psyr_1119 0.71 -0.3
1,268,774 - Psyr_1119 0.71 +1.7
1,269,048 + -0.8
1,269,049 - -1.6
1,269,049 - -1.1
1,269,073 + +1.2
1,269,073 + +0.5

Or see this region's nucleotide sequence