Experiment: KB with Flavone 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0783 and Psyr_0784 are separated by 9 nucleotides Psyr_0784 and Psyr_0785 are separated by 36 nucleotides Psyr_0785 and Psyr_0786 are separated by 30 nucleotides
Psyr_0783: Psyr_0783 - MCP methyltransferase, CheR-type, at 889,493 to 890,302
_0783
Psyr_0784: Psyr_0784 - CheW-like protein, at 890,312 to 890,851
_0784
Psyr_0785: Psyr_0785 - Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer, at 890,888 to 892,543
_0785
Psyr_0786: Psyr_0786 - CheW-like protein:ATP-binding region, ATPase-like:Signal transducing histidine kinase, homodimeric:Hpt, at 892,574 to 894,691
_0786
Position (kb) 890
891
892
893 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 889.948 kb on - strand, within Psyr_0783 at 890.064 kb on + strand, within Psyr_0783 at 890.065 kb on - strand, within Psyr_0783 at 890.065 kb on - strand, within Psyr_0783 at 890.065 kb on - strand, within Psyr_0783 at 890.142 kb on + strand, within Psyr_0783 at 890.143 kb on - strand, within Psyr_0783 at 890.151 kb on + strand, within Psyr_0783 at 890.151 kb on + strand, within Psyr_0783 at 890.151 kb on + strand, within Psyr_0783 at 890.151 kb on + strand, within Psyr_0783 at 890.152 kb on - strand, within Psyr_0783 at 890.152 kb on - strand, within Psyr_0783 at 890.166 kb on + strand, within Psyr_0783 at 890.166 kb on + strand, within Psyr_0783 at 890.167 kb on - strand, within Psyr_0783 at 890.244 kb on + strand at 890.244 kb on + strand at 890.244 kb on + strand at 890.245 kb on - strand at 890.245 kb on - strand at 890.294 kb on - strand at 890.294 kb on - strand at 890.724 kb on + strand, within Psyr_0784 at 890.724 kb on + strand, within Psyr_0784 at 891.106 kb on + strand, within Psyr_0785 at 891.739 kb on + strand, within Psyr_0785 at 891.740 kb on - strand, within Psyr_0785 at 891.956 kb on + strand, within Psyr_0785 at 891.957 kb on - strand, within Psyr_0785 at 892.219 kb on + strand, within Psyr_0785 at 892.220 kb on - strand, within Psyr_0785 at 892.236 kb on + strand, within Psyr_0785 at 892.237 kb on - strand, within Psyr_0785 at 892.530 kb on + strand at 892.531 kb on - strand at 892.531 kb on - strand at 892.531 kb on - strand at 892.549 kb on + strand at 892.549 kb on + strand at 892.549 kb on + strand at 892.550 kb on - strand at 892.550 kb on - strand at 892.550 kb on - strand at 892.550 kb on - strand at 892.550 kb on - strand at 892.631 kb on + strand at 892.631 kb on + strand at 892.631 kb on + strand at 892.631 kb on + strand at 892.632 kb on - strand at 892.632 kb on - strand at 892.632 kb on - strand at 892.632 kb on - strand at 892.872 kb on + strand, within Psyr_0786 at 892.873 kb on - strand, within Psyr_0786 at 892.909 kb on - strand, within Psyr_0786 at 892.986 kb on + strand, within Psyr_0786 at 892.987 kb on - strand, within Psyr_0786 at 893.110 kb on + strand, within Psyr_0786 at 893.110 kb on + strand, within Psyr_0786 at 893.110 kb on + strand, within Psyr_0786 at 893.110 kb on + strand, within Psyr_0786 at 893.110 kb on + strand, within Psyr_0786 at 893.111 kb on - strand, within Psyr_0786 at 893.111 kb on - strand, within Psyr_0786 at 893.111 kb on - strand, within Psyr_0786 at 893.205 kb on + strand, within Psyr_0786 at 893.206 kb on - strand, within Psyr_0786 at 893.206 kb on - strand, within Psyr_0786 at 893.206 kb on - strand, within Psyr_0786 at 893.337 kb on + strand, within Psyr_0786
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Flavone 0.125 mg/ml remove 889,948 - Psyr_0783 0.56 -0.3 890,064 + Psyr_0783 0.70 +0.5 890,065 - Psyr_0783 0.71 +0.1 890,065 - Psyr_0783 0.71 +0.9 890,065 - Psyr_0783 0.71 +1.3 890,142 + Psyr_0783 0.80 -0.3 890,143 - Psyr_0783 0.80 +0.7 890,151 + Psyr_0783 0.81 -0.4 890,151 + Psyr_0783 0.81 -0.4 890,151 + Psyr_0783 0.81 -0.1 890,151 + Psyr_0783 0.81 +0.6 890,152 - Psyr_0783 0.81 -0.1 890,152 - Psyr_0783 0.81 +1.5 890,166 + Psyr_0783 0.83 +0.5 890,166 + Psyr_0783 0.83 -0.3 890,167 - Psyr_0783 0.83 +1.0 890,244 + -0.7 890,244 + +0.2 890,244 + +0.2 890,245 - -0.5 890,245 - +2.8 890,294 - -0.1 890,294 - +0.9 890,724 + Psyr_0784 0.76 +0.1 890,724 + Psyr_0784 0.76 +1.9 891,106 + Psyr_0785 0.13 +1.0 891,739 + Psyr_0785 0.51 +0.0 891,740 - Psyr_0785 0.51 -0.6 891,956 + Psyr_0785 0.64 -1.6 891,957 - Psyr_0785 0.65 -1.4 892,219 + Psyr_0785 0.80 -0.8 892,220 - Psyr_0785 0.80 -0.5 892,236 + Psyr_0785 0.81 -0.5 892,237 - Psyr_0785 0.81 -1.1 892,530 + +0.1 892,531 - -0.8 892,531 - -0.3 892,531 - +0.3 892,549 + +0.0 892,549 + +1.3 892,549 + +0.3 892,550 - -0.9 892,550 - +1.1 892,550 - -0.0 892,550 - +0.1 892,550 - +0.6 892,631 + -1.1 892,631 + -0.5 892,631 + +0.6 892,631 + +0.5 892,632 - -0.2 892,632 - +0.8 892,632 - -0.5 892,632 - +0.2 892,872 + Psyr_0786 0.14 +0.9 892,873 - Psyr_0786 0.14 -1.1 892,909 - Psyr_0786 0.16 -1.4 892,986 + Psyr_0786 0.19 +2.0 892,987 - Psyr_0786 0.19 -0.1 893,110 + Psyr_0786 0.25 +0.2 893,110 + Psyr_0786 0.25 -0.9 893,110 + Psyr_0786 0.25 -1.4 893,110 + Psyr_0786 0.25 +0.8 893,110 + Psyr_0786 0.25 +0.5 893,111 - Psyr_0786 0.25 +0.8 893,111 - Psyr_0786 0.25 +1.9 893,111 - Psyr_0786 0.25 -0.8 893,205 + Psyr_0786 0.30 +0.8 893,206 - Psyr_0786 0.30 -2.1 893,206 - Psyr_0786 0.30 -1.0 893,206 - Psyr_0786 0.30 +0.0 893,337 + Psyr_0786 0.36 -1.0
Or see this region's nucleotide sequence