Experiment: KB with Flavone 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0692 and Psyr_0693 overlap by 4 nucleotides Psyr_0693 and Psyr_0694 overlap by 7 nucleotides Psyr_0694 and Psyr_0695 overlap by 4 nucleotides
Psyr_0692: Psyr_0692 - Binding-protein-dependent transport systems inner membrane component, at 797,032 to 797,799
_0692
Psyr_0693: Psyr_0693 - Binding-protein-dependent transport systems inner membrane component, at 797,796 to 798,623
_0693
Psyr_0694: Psyr_0694 - ABC transporter, at 798,617 to 799,414
_0694
Psyr_0695: Psyr_0695 - extracellular solute-binding protein, family 3, at 799,411 to 800,262
_0695
Position (kb) 798
799
800 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 797.733 kb on - strand at 797.733 kb on - strand at 797.733 kb on - strand at 797.733 kb on - strand at 797.733 kb on - strand at 797.995 kb on + strand, within Psyr_0693 at 797.995 kb on + strand, within Psyr_0693 at 797.995 kb on + strand, within Psyr_0693 at 797.995 kb on + strand, within Psyr_0693 at 797.996 kb on - strand, within Psyr_0693 at 797.996 kb on - strand, within Psyr_0693 at 797.996 kb on - strand, within Psyr_0693 at 798.118 kb on + strand, within Psyr_0693 at 798.119 kb on - strand, within Psyr_0693 at 798.119 kb on - strand, within Psyr_0693 at 798.119 kb on - strand, within Psyr_0693 at 798.142 kb on + strand, within Psyr_0693 at 798.142 kb on + strand, within Psyr_0693 at 798.142 kb on + strand, within Psyr_0693 at 798.142 kb on + strand, within Psyr_0693 at 798.142 kb on + strand, within Psyr_0693 at 798.142 kb on + strand, within Psyr_0693 at 798.142 kb on + strand, within Psyr_0693 at 798.142 kb on + strand, within Psyr_0693 at 798.142 kb on + strand, within Psyr_0693 at 798.143 kb on - strand, within Psyr_0693 at 798.143 kb on - strand, within Psyr_0693 at 798.143 kb on - strand, within Psyr_0693 at 798.143 kb on - strand, within Psyr_0693 at 798.143 kb on - strand, within Psyr_0693 at 798.143 kb on - strand, within Psyr_0693 at 798.143 kb on - strand, within Psyr_0693 at 798.375 kb on + strand, within Psyr_0693 at 798.376 kb on - strand, within Psyr_0693 at 798.510 kb on + strand, within Psyr_0693 at 798.687 kb on + strand at 798.687 kb on + strand at 798.687 kb on + strand at 798.688 kb on - strand at 798.688 kb on - strand at 798.688 kb on - strand at 798.930 kb on + strand, within Psyr_0694 at 798.930 kb on + strand, within Psyr_0694 at 798.930 kb on + strand, within Psyr_0694 at 798.931 kb on - strand, within Psyr_0694 at 798.931 kb on - strand, within Psyr_0694 at 798.931 kb on - strand, within Psyr_0694 at 798.931 kb on - strand, within Psyr_0694 at 799.457 kb on + strand at 799.457 kb on + strand at 799.457 kb on + strand at 799.457 kb on + strand at 799.457 kb on + strand at 799.457 kb on + strand at 799.457 kb on + strand at 799.458 kb on - strand at 799.458 kb on - strand at 799.458 kb on - strand at 799.595 kb on - strand, within Psyr_0695 at 799.616 kb on + strand, within Psyr_0695 at 799.617 kb on - strand, within Psyr_0695 at 799.817 kb on + strand, within Psyr_0695 at 799.817 kb on + strand, within Psyr_0695 at 799.817 kb on + strand, within Psyr_0695 at 799.817 kb on + strand, within Psyr_0695 at 799.818 kb on - strand, within Psyr_0695 at 799.818 kb on - strand, within Psyr_0695 at 799.955 kb on - strand, within Psyr_0695 at 799.955 kb on - strand, within Psyr_0695 at 800.001 kb on + strand, within Psyr_0695 at 800.002 kb on - strand, within Psyr_0695 at 800.114 kb on + strand, within Psyr_0695 at 800.250 kb on + strand at 800.360 kb on + strand at 800.360 kb on + strand at 800.361 kb on - strand at 800.361 kb on - strand at 800.362 kb on + strand at 800.362 kb on + strand at 800.362 kb on + strand at 800.362 kb on + strand at 800.362 kb on + strand at 800.362 kb on + strand at 800.362 kb on + strand at 800.363 kb on - strand at 800.363 kb on - strand at 800.363 kb on - strand at 800.363 kb on - strand at 800.363 kb on - strand at 800.363 kb on - strand at 800.363 kb on - strand at 800.363 kb on - strand at 800.363 kb on - strand at 800.363 kb on - strand at 800.363 kb on - strand at 800.363 kb on - strand at 800.363 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Flavone 0.125 mg/ml remove 797,733 - +0.3 797,733 - +1.1 797,733 - +0.4 797,733 - +0.2 797,733 - +1.3 797,995 + Psyr_0693 0.24 -0.3 797,995 + Psyr_0693 0.24 +0.3 797,995 + Psyr_0693 0.24 +0.7 797,995 + Psyr_0693 0.24 -0.1 797,996 - Psyr_0693 0.24 -2.3 797,996 - Psyr_0693 0.24 -0.6 797,996 - Psyr_0693 0.24 -0.5 798,118 + Psyr_0693 0.39 +0.5 798,119 - Psyr_0693 0.39 +0.7 798,119 - Psyr_0693 0.39 -0.9 798,119 - Psyr_0693 0.39 +0.2 798,142 + Psyr_0693 0.42 -0.5 798,142 + Psyr_0693 0.42 +0.3 798,142 + Psyr_0693 0.42 -0.0 798,142 + Psyr_0693 0.42 +0.3 798,142 + Psyr_0693 0.42 -1.9 798,142 + Psyr_0693 0.42 +0.4 798,142 + Psyr_0693 0.42 -2.2 798,142 + Psyr_0693 0.42 +0.8 798,142 + Psyr_0693 0.42 -1.1 798,143 - Psyr_0693 0.42 -0.6 798,143 - Psyr_0693 0.42 +1.7 798,143 - Psyr_0693 0.42 -0.3 798,143 - Psyr_0693 0.42 -0.5 798,143 - Psyr_0693 0.42 +0.1 798,143 - Psyr_0693 0.42 +1.8 798,143 - Psyr_0693 0.42 -1.6 798,375 + Psyr_0693 0.70 -0.6 798,376 - Psyr_0693 0.70 -0.1 798,510 + Psyr_0693 0.86 +0.1 798,687 + -0.3 798,687 + +2.9 798,687 + +0.9 798,688 - +0.3 798,688 - +0.1 798,688 - +0.7 798,930 + Psyr_0694 0.39 -0.2 798,930 + Psyr_0694 0.39 -0.0 798,930 + Psyr_0694 0.39 +0.2 798,931 - Psyr_0694 0.39 +1.2 798,931 - Psyr_0694 0.39 +0.7 798,931 - Psyr_0694 0.39 +1.5 798,931 - Psyr_0694 0.39 +0.3 799,457 + -0.1 799,457 + +0.9 799,457 + -0.9 799,457 + +1.7 799,457 + -0.3 799,457 + -0.1 799,457 + +0.0 799,458 - +0.9 799,458 - +0.3 799,458 - +0.0 799,595 - Psyr_0695 0.22 -1.6 799,616 + Psyr_0695 0.24 +0.1 799,617 - Psyr_0695 0.24 -0.7 799,817 + Psyr_0695 0.48 -1.0 799,817 + Psyr_0695 0.48 +0.5 799,817 + Psyr_0695 0.48 +0.2 799,817 + Psyr_0695 0.48 -1.2 799,818 - Psyr_0695 0.48 -0.5 799,818 - Psyr_0695 0.48 -0.3 799,955 - Psyr_0695 0.64 +0.9 799,955 - Psyr_0695 0.64 +1.8 800,001 + Psyr_0695 0.69 +0.2 800,002 - Psyr_0695 0.69 -0.1 800,114 + Psyr_0695 0.83 +0.2 800,250 + +1.7 800,360 + +0.0 800,360 + -1.3 800,361 - +0.5 800,361 - +0.8 800,362 + -0.1 800,362 + +0.7 800,362 + +0.3 800,362 + +2.7 800,362 + +0.5 800,362 + -0.5 800,362 + -0.7 800,363 - -1.1 800,363 - +0.7 800,363 - +0.1 800,363 - -0.1 800,363 - -0.6 800,363 - +0.9 800,363 - +2.1 800,363 - -0.8 800,363 - +0.3 800,363 - +0.5 800,363 - +0.3 800,363 - +0.4 800,363 - -1.9
Or see this region's nucleotide sequence