Experiment: KB with Flavone 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0620 and Psyr_0621 overlap by 1 nucleotides Psyr_0621 and Psyr_0622 are separated by 93 nucleotides Psyr_0622 and Psyr_0623 are separated by 410 nucleotides
Psyr_0620: Psyr_0620 - Outer membrane autotransporter barrel, at 708,816 to 711,095
_0620
Psyr_0621: Psyr_0621 - conserved hypothetical protein, at 711,095 to 711,946
_0621
Psyr_0622: Psyr_0622 - transcriptional regulator, XRE family, at 712,040 to 712,282
_0622
Psyr_0623: Psyr_0623 - Peptidase S24, S26A and S26B, at 712,693 to 713,424
_0623
Position (kb) 712
713 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 711.204 kb on + strand, within Psyr_0621 at 711.204 kb on + strand, within Psyr_0621 at 711.204 kb on + strand, within Psyr_0621 at 711.204 kb on + strand, within Psyr_0621 at 711.205 kb on - strand, within Psyr_0621 at 711.205 kb on - strand, within Psyr_0621 at 711.276 kb on + strand, within Psyr_0621 at 711.276 kb on + strand, within Psyr_0621 at 711.317 kb on + strand, within Psyr_0621 at 711.318 kb on - strand, within Psyr_0621 at 711.382 kb on + strand, within Psyr_0621 at 711.382 kb on + strand, within Psyr_0621 at 711.382 kb on + strand, within Psyr_0621 at 711.382 kb on + strand, within Psyr_0621 at 711.383 kb on - strand, within Psyr_0621 at 711.383 kb on - strand, within Psyr_0621 at 711.383 kb on - strand, within Psyr_0621 at 711.383 kb on - strand, within Psyr_0621 at 711.545 kb on - strand, within Psyr_0621 at 711.545 kb on - strand, within Psyr_0621 at 711.545 kb on - strand, within Psyr_0621 at 711.545 kb on - strand, within Psyr_0621 at 711.558 kb on - strand, within Psyr_0621 at 711.562 kb on + strand, within Psyr_0621 at 711.566 kb on - strand, within Psyr_0621 at 711.693 kb on + strand, within Psyr_0621 at 711.693 kb on + strand, within Psyr_0621 at 711.694 kb on - strand, within Psyr_0621 at 711.694 kb on - strand, within Psyr_0621 at 711.694 kb on - strand, within Psyr_0621 at 711.694 kb on - strand, within Psyr_0621 at 711.738 kb on - strand, within Psyr_0621 at 711.738 kb on - strand, within Psyr_0621 at 711.759 kb on + strand, within Psyr_0621 at 711.760 kb on - strand, within Psyr_0621 at 711.862 kb on + strand at 711.863 kb on - strand at 711.930 kb on + strand at 711.930 kb on + strand at 711.930 kb on + strand at 711.930 kb on + strand at 711.931 kb on - strand at 711.931 kb on - strand at 711.931 kb on - strand at 711.931 kb on - strand at 711.931 kb on - strand at 711.931 kb on - strand at 711.931 kb on - strand at 711.955 kb on + strand at 711.956 kb on - strand at 711.956 kb on - strand at 711.988 kb on - strand at 712.001 kb on + strand at 712.081 kb on - strand, within Psyr_0622 at 712.182 kb on - strand, within Psyr_0622 at 712.193 kb on + strand, within Psyr_0622 at 712.194 kb on - strand, within Psyr_0622 at 712.310 kb on + strand at 712.310 kb on + strand at 712.311 kb on - strand at 712.314 kb on + strand at 712.315 kb on - strand at 712.318 kb on + strand at 712.318 kb on + strand at 712.318 kb on + strand at 712.419 kb on - strand at 712.457 kb on - strand at 712.500 kb on + strand at 712.500 kb on + strand at 712.556 kb on + strand at 712.557 kb on - strand at 712.696 kb on + strand at 712.901 kb on + strand, within Psyr_0623 at 712.901 kb on + strand, within Psyr_0623 at 712.901 kb on + strand, within Psyr_0623 at 712.901 kb on + strand, within Psyr_0623 at 712.901 kb on + strand, within Psyr_0623
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Flavone 0.125 mg/ml remove 711,204 + Psyr_0621 0.13 -0.2 711,204 + Psyr_0621 0.13 +0.3 711,204 + Psyr_0621 0.13 -1.1 711,204 + Psyr_0621 0.13 +0.5 711,205 - Psyr_0621 0.13 -0.4 711,205 - Psyr_0621 0.13 +1.0 711,276 + Psyr_0621 0.21 -0.2 711,276 + Psyr_0621 0.21 +0.1 711,317 + Psyr_0621 0.26 +0.1 711,318 - Psyr_0621 0.26 -0.0 711,382 + Psyr_0621 0.34 +0.3 711,382 + Psyr_0621 0.34 -0.4 711,382 + Psyr_0621 0.34 -0.1 711,382 + Psyr_0621 0.34 -0.4 711,383 - Psyr_0621 0.34 -1.7 711,383 - Psyr_0621 0.34 +0.5 711,383 - Psyr_0621 0.34 -1.6 711,383 - Psyr_0621 0.34 -1.0 711,545 - Psyr_0621 0.53 -1.5 711,545 - Psyr_0621 0.53 +1.1 711,545 - Psyr_0621 0.53 +0.3 711,545 - Psyr_0621 0.53 -0.4 711,558 - Psyr_0621 0.54 +0.6 711,562 + Psyr_0621 0.55 -0.2 711,566 - Psyr_0621 0.55 +3.4 711,693 + Psyr_0621 0.70 -0.1 711,693 + Psyr_0621 0.70 -0.4 711,694 - Psyr_0621 0.70 +0.7 711,694 - Psyr_0621 0.70 -0.0 711,694 - Psyr_0621 0.70 +1.2 711,694 - Psyr_0621 0.70 -0.8 711,738 - Psyr_0621 0.75 -1.3 711,738 - Psyr_0621 0.75 -2.2 711,759 + Psyr_0621 0.78 +0.2 711,760 - Psyr_0621 0.78 +0.8 711,862 + -0.3 711,863 - +0.3 711,930 + -0.4 711,930 + +0.0 711,930 + +0.3 711,930 + -0.1 711,931 - +0.6 711,931 - -1.1 711,931 - +0.4 711,931 - +0.6 711,931 - -0.3 711,931 - +0.1 711,931 - +1.9 711,955 + +0.5 711,956 - +0.5 711,956 - -0.9 711,988 - +0.2 712,001 + +0.2 712,081 - Psyr_0622 0.17 +1.0 712,182 - Psyr_0622 0.58 +1.2 712,193 + Psyr_0622 0.63 +1.9 712,194 - Psyr_0622 0.63 -0.2 712,310 + +0.1 712,310 + -0.2 712,311 - -0.0 712,314 + -0.6 712,315 - +0.1 712,318 + +0.0 712,318 + -1.4 712,318 + +1.0 712,419 - -0.3 712,457 - +0.6 712,500 + +0.9 712,500 + -0.6 712,556 + -0.4 712,557 - +0.2 712,696 + -0.2 712,901 + Psyr_0623 0.28 -0.5 712,901 + Psyr_0623 0.28 -0.4 712,901 + Psyr_0623 0.28 +1.0 712,901 + Psyr_0623 0.28 +0.6 712,901 + Psyr_0623 0.28 -1.4
Or see this region's nucleotide sequence