Experiment: KB with Flavone 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0210 and Psyr_0211 are separated by 147 nucleotides Psyr_0211 and Psyr_0212 are separated by 13 nucleotides Psyr_0212 and Psyr_0213 are separated by 312 nucleotides
Psyr_0210: Psyr_0210 - DNA-directed RNA polymerase subunit omega, at 225,170 to 225,433
_0210
Psyr_0211: Psyr_0211 - guanylate kinase, at 225,581 to 226,225
_0211
Psyr_0212: Psyr_0212 - Conserved hypothetical protein 255, at 226,239 to 227,102
_0212
Psyr_0213: Psyr_0213 - RNAse PH, at 227,415 to 228,137
_0213
Position (kb) 226
227
228 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 225.365 kb on - strand, within Psyr_0210 at 225.405 kb on - strand, within Psyr_0210 at 225.405 kb on - strand, within Psyr_0210 at 225.549 kb on - strand at 225.612 kb on + strand at 225.613 kb on - strand at 225.613 kb on - strand at 226.341 kb on - strand, within Psyr_0212 at 226.341 kb on - strand, within Psyr_0212 at 226.341 kb on - strand, within Psyr_0212 at 226.341 kb on - strand, within Psyr_0212 at 226.341 kb on - strand, within Psyr_0212 at 226.341 kb on - strand, within Psyr_0212 at 226.356 kb on - strand, within Psyr_0212 at 227.110 kb on - strand at 227.196 kb on - strand at 227.272 kb on + strand at 227.344 kb on + strand at 227.345 kb on - strand at 227.345 kb on - strand at 227.345 kb on - strand at 227.373 kb on + strand at 227.373 kb on + strand at 227.373 kb on + strand at 227.373 kb on + strand at 227.374 kb on - strand at 227.375 kb on + strand at 227.376 kb on - strand at 227.376 kb on - strand at 227.401 kb on + strand at 227.401 kb on + strand at 227.408 kb on - strand at 227.475 kb on + strand at 227.475 kb on + strand at 227.476 kb on - strand at 227.500 kb on + strand, within Psyr_0213 at 227.501 kb on - strand, within Psyr_0213 at 227.519 kb on + strand, within Psyr_0213 at 227.519 kb on + strand, within Psyr_0213 at 227.519 kb on + strand, within Psyr_0213 at 227.558 kb on - strand, within Psyr_0213 at 227.624 kb on + strand, within Psyr_0213 at 227.637 kb on - strand, within Psyr_0213 at 227.675 kb on + strand, within Psyr_0213 at 227.676 kb on - strand, within Psyr_0213 at 227.676 kb on - strand, within Psyr_0213 at 227.676 kb on - strand, within Psyr_0213 at 227.676 kb on - strand, within Psyr_0213 at 227.754 kb on + strand, within Psyr_0213 at 227.754 kb on + strand, within Psyr_0213 at 227.754 kb on + strand, within Psyr_0213 at 227.754 kb on + strand, within Psyr_0213 at 227.754 kb on + strand, within Psyr_0213 at 227.755 kb on - strand, within Psyr_0213 at 227.755 kb on - strand, within Psyr_0213 at 227.755 kb on - strand, within Psyr_0213 at 227.804 kb on + strand, within Psyr_0213 at 227.805 kb on - strand, within Psyr_0213 at 227.805 kb on - strand, within Psyr_0213 at 227.805 kb on - strand, within Psyr_0213 at 227.805 kb on - strand, within Psyr_0213 at 227.805 kb on - strand, within Psyr_0213 at 227.805 kb on - strand, within Psyr_0213 at 227.805 kb on - strand, within Psyr_0213 at 227.807 kb on + strand, within Psyr_0213 at 227.919 kb on + strand, within Psyr_0213 at 227.919 kb on + strand, within Psyr_0213 at 227.919 kb on + strand, within Psyr_0213 at 227.919 kb on + strand, within Psyr_0213 at 227.920 kb on - strand, within Psyr_0213 at 227.920 kb on - strand, within Psyr_0213 at 227.920 kb on - strand, within Psyr_0213 at 227.920 kb on - strand, within Psyr_0213 at 227.920 kb on - strand, within Psyr_0213 at 227.949 kb on + strand, within Psyr_0213 at 227.950 kb on - strand, within Psyr_0213 at 227.950 kb on - strand, within Psyr_0213
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Flavone 0.125 mg/ml remove 225,365 - Psyr_0210 0.74 +1.4 225,405 - Psyr_0210 0.89 -1.0 225,405 - Psyr_0210 0.89 -1.0 225,549 - -0.2 225,612 + +0.5 225,613 - +0.5 225,613 - +0.2 226,341 - Psyr_0212 0.12 -0.1 226,341 - Psyr_0212 0.12 +2.4 226,341 - Psyr_0212 0.12 +1.9 226,341 - Psyr_0212 0.12 +0.5 226,341 - Psyr_0212 0.12 -0.4 226,341 - Psyr_0212 0.12 +1.7 226,356 - Psyr_0212 0.14 -0.5 227,110 - +0.3 227,196 - +0.4 227,272 + +1.4 227,344 + +0.0 227,345 - -0.9 227,345 - +3.8 227,345 - -0.3 227,373 + -0.5 227,373 + +0.1 227,373 + +1.5 227,373 + +0.6 227,374 - +1.0 227,375 + +0.0 227,376 - +1.1 227,376 - +1.0 227,401 + +1.8 227,401 + -0.5 227,408 - +1.3 227,475 + -1.0 227,475 + +0.3 227,476 - +0.3 227,500 + Psyr_0213 0.12 -0.4 227,501 - Psyr_0213 0.12 -0.8 227,519 + Psyr_0213 0.14 +1.0 227,519 + Psyr_0213 0.14 -0.5 227,519 + Psyr_0213 0.14 +0.3 227,558 - Psyr_0213 0.20 +0.7 227,624 + Psyr_0213 0.29 -0.4 227,637 - Psyr_0213 0.31 -0.5 227,675 + Psyr_0213 0.36 -0.3 227,676 - Psyr_0213 0.36 +0.5 227,676 - Psyr_0213 0.36 -0.5 227,676 - Psyr_0213 0.36 +0.1 227,676 - Psyr_0213 0.36 +0.4 227,754 + Psyr_0213 0.47 -0.4 227,754 + Psyr_0213 0.47 -0.6 227,754 + Psyr_0213 0.47 +0.4 227,754 + Psyr_0213 0.47 -1.1 227,754 + Psyr_0213 0.47 +2.4 227,755 - Psyr_0213 0.47 +0.1 227,755 - Psyr_0213 0.47 -0.9 227,755 - Psyr_0213 0.47 +0.4 227,804 + Psyr_0213 0.54 -1.2 227,805 - Psyr_0213 0.54 -0.6 227,805 - Psyr_0213 0.54 -0.8 227,805 - Psyr_0213 0.54 +0.2 227,805 - Psyr_0213 0.54 -0.2 227,805 - Psyr_0213 0.54 +0.1 227,805 - Psyr_0213 0.54 -0.9 227,805 - Psyr_0213 0.54 -0.5 227,807 + Psyr_0213 0.54 -1.2 227,919 + Psyr_0213 0.70 -0.7 227,919 + Psyr_0213 0.70 +0.9 227,919 + Psyr_0213 0.70 -0.2 227,919 + Psyr_0213 0.70 -0.4 227,920 - Psyr_0213 0.70 -0.7 227,920 - Psyr_0213 0.70 -0.2 227,920 - Psyr_0213 0.70 -0.0 227,920 - Psyr_0213 0.70 -0.4 227,920 - Psyr_0213 0.70 +0.3 227,949 + Psyr_0213 0.74 +0.1 227,950 - Psyr_0213 0.74 -0.8 227,950 - Psyr_0213 0.74 -0.4
Or see this region's nucleotide sequence