Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS17505

Experiment: R2A control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A control
3,825,428	+				+0.2
3,825,428	+				-1.4
3,825,428	+				-1.7
3,825,428	+				+1.1
3,825,428	+				-0.4
3,825,429	-				-1.8
3,825,429	-				-0.7
3,825,429	-				-1.7
3,825,429	-				+0.2
3,826,226	+				-0.7
3,826,226	+				+0.4
3,826,226	+				-0.7
3,826,226	+				+0.5
3,826,226	+				+0.5
3,826,226	+				+1.1
3,826,452	+		LRK54_RS17505	0.47	-0.9
3,826,452	+		LRK54_RS17505	0.47	-1.7
3,826,452	+		LRK54_RS17505	0.47	-1.9
3,826,452	+		LRK54_RS17505	0.47	-1.4
3,826,452	+		LRK54_RS17505	0.47	-0.4
3,826,452	+		LRK54_RS17505	0.47	-1.4
3,826,452	+		LRK54_RS17505	0.47	-2.2
3,826,452	+		LRK54_RS17505	0.47	-2.4
3,826,452	+		LRK54_RS17505	0.47	+0.6
3,826,452	+		LRK54_RS17505	0.47	-2.2
3,826,452	+		LRK54_RS17505	0.47	-0.2
3,826,452	+		LRK54_RS17505	0.47	-0.9
3,826,452	+		LRK54_RS17505	0.47	-2.7
3,826,452	+		LRK54_RS17505	0.47	-2.3
3,826,452	+		LRK54_RS17505	0.47	-2.8
3,826,796	+				-0.4
3,826,796	+				+0.3
3,826,796	+				-0.6
3,826,796	+				+1.1
3,826,796	+				-0.6
3,826,796	+				+0.3
3,826,796	+				+0.2
3,826,796	+				+0.8
3,826,796	+				+0.3
3,826,796	+				+1.6
3,826,796	+				-0.8
3,826,796	+				+2.4
3,826,796	+				-2.4
3,826,796	+				+0.2
3,826,796	+				+2.4
3,826,796	+				-0.0
3,826,796	+				+0.5
3,826,796	+				+2.2
3,826,796	+				+0.5
3,826,796	+				+0.3
3,826,796	+				+0.6
3,826,796	+				+1.6
3,826,796	+				+0.3
3,826,796	+				+0.2
3,826,796	+				+0.7
3,826,796	+				+0.2
3,826,796	+				+0.9
3,826,796	+				-0.0
3,826,796	+				-0.9
3,826,796	+				+1.9
3,826,796	+				+0.4
3,826,796	+				+2.9
3,826,796	+				-1.2
3,826,796	+				+0.5
3,826,796	+				+1.9
3,826,796	+				-0.8
3,826,796	+				+0.7
3,826,796	+				+0.9
3,826,796	+				+0.1
3,826,796	+				+0.7
3,826,796	+				-0.4
3,826,796	+				-0.2
3,826,796	+				+0.8
3,826,796	+				+0.1
3,826,796	+				+0.4
3,826,796	+				+0.7
3,826,796	+				+0.3
3,826,796	+				+1.0
3,826,796	+				-0.0
3,826,796	+				+0.4
3,826,796	+				+2.4
3,826,796	+				+1.2
3,826,796	+				-0.0
3,826,796	+				-1.5
3,826,796	+				-0.7
3,826,796	+				+0.2
3,826,796	+				+1.4
3,826,796	+				-1.0
3,826,796	+				+2.1
3,826,796	+				+0.9
3,826,796	+				-0.4
3,826,796	+				+0.4
3,826,797	-				+2.6
3,826,797	-				+0.8
3,826,797	-				-0.9
3,826,797	-				+0.5
3,826,797	-				+0.8
3,826,797	-				-0.3
3,826,797	-				+0.3
3,826,797	-				+1.2
3,826,797	-				-2.4
3,826,797	-				-1.1
3,826,797	-				-0.1
3,826,797	-				-1.4
3,826,797	-				+0.6
3,826,797	-				+1.1
3,826,797	-				+1.2
3,826,797	-				+0.2
3,826,797	-				-0.4
3,826,797	-				+1.6
3,826,797	-				-2.3
3,826,797	-				+0.9
3,826,797	-				+1.3
3,826,797	-				-0.5
3,826,797	-				+0.1
3,826,797	-				-0.9
3,826,797	-				+0.0
3,826,797	-				+2.0
3,826,797	-				-2.1
3,826,797	-				+1.0
3,826,797	-				-1.2
3,826,797	-				-1.4
3,826,797	-				-0.4
3,826,797	-				-0.8
3,826,797	-				+0.3
3,826,797	-				-2.6
3,826,797	-				-1.1
3,826,797	-				-0.7
3,826,797	-				+0.2
3,826,797	-				-0.2
3,826,797	-				-0.1
3,826,797	-				-0.7
3,826,797	-				-1.2
3,826,797	-				+0.5
3,826,887	+				+0.5
3,826,887	+				+0.5
3,826,887	+				-0.2
3,826,887	+				-0.4
3,826,887	+				+0.2
3,826,887	+				-0.6
3,826,887	+				+0.1
3,826,887	+				-0.5
3,826,887	+				+1.6
3,826,887	+				-0.6
3,826,887	+				+0.6
3,826,887	+				-0.8
3,826,887	+				+0.2
3,826,887	+				+0.6
3,826,887	+				-0.7
3,826,887	+				-0.4
3,826,887	+				-0.1
3,826,887	+				-1.8
3,826,887	+				+0.7
3,826,887	+				+0.4
3,826,887	+				+1.2
3,826,887	+				-0.6
3,826,888	-				+1.1
3,826,888	-				+0.2
3,826,888	-				-1.5
3,826,888	-				+0.5
3,826,888	-				-0.0
3,826,888	-				-0.7
3,826,888	-				-0.5
3,826,888	-				-0.4
3,826,924	+				-1.1
3,826,924	+				+1.6
3,826,925	-				+0.6
3,826,925	-				-0.3
3,826,925	-				+1.6
3,826,955	+				-1.9
3,826,955	+				+2.1
3,826,956	-				-0.4
3,826,956	-				-0.4
3,826,967	-				+0.6
3,826,967	-				-0.3
3,826,982	+				+0.3
3,826,982	+				+1.6
3,826,982	+				-0.0
3,826,982	+				-0.4
3,826,982	+				+0.5
3,826,982	+				+0.5
3,826,983	-				-0.4
3,826,983	-				+1.1
3,826,983	-				-0.1
3,826,983	-				-0.9
3,826,983	-				-1.5
3,826,983	-				+0.2
3,826,983	-				+0.2
3,827,288	+		LRK54_RS17515	0.76	+0.1
3,827,288	+		LRK54_RS17515	0.76	-0.7
3,827,288	+		LRK54_RS17515	0.76	-0.8
3,827,288	+		LRK54_RS17515	0.76	-0.9
3,827,288	+		LRK54_RS17515	0.76	-0.2
3,827,288	+		LRK54_RS17515	0.76	+0.3
3,827,288	+		LRK54_RS17515	0.76	+0.3
3,827,288	+		LRK54_RS17515	0.76	-3.2
3,827,289	-		LRK54_RS17515	0.76	-0.3
3,827,289	-		LRK54_RS17515	0.76	+2.1
3,827,289	-		LRK54_RS17515	0.76	-0.4
3,827,289	-		LRK54_RS17515	0.76	+0.7
3,827,289	-		LRK54_RS17515	0.76	-0.7
3,827,289	-		LRK54_RS17515	0.76	-0.1
3,827,289	-		LRK54_RS17515	0.76	+1.3
3,827,289	-		LRK54_RS17515	0.76	+0.5
3,827,386	+				+0.1
3,827,386	+				-2.6
3,827,386	+				-1.2
3,827,387	-				-1.5
3,827,387	-				-0.6
3,827,387	-				-1.0
3,827,387	-				-1.4
3,827,387	-				+0.2
3,827,387	-				+0.2
3,827,387	-				-1.7
3,827,387	-				-0.2
3,827,387	-				+2.1
3,827,443	+				-1.4
3,827,443	+				+0.2
3,827,443	+				+1.3
3,827,444	-				-1.2
3,827,444	-				-2.1
3,827,444	-				-1.1
3,827,444	-				-0.6
3,827,444	-				+0.8
3,827,444	-				-0.2
3,827,671	+		LRK54_RS17520	0.36	-0.4
3,827,671	+		LRK54_RS17520	0.36	+0.4
3,827,672	-		LRK54_RS17520	0.36	+0.5
3,827,672	-		LRK54_RS17520	0.36	+0.3
3,827,672	-		LRK54_RS17520	0.36	+0.6