Strain Fitness in Pantoea sp. MT58 around IAI47_18525

Experiment: nitrogen source nitrite 1mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrogen source nitrite 1mM
3,939,991	+		IAI47_18520	0.34	+0.2
3,940,036	+		IAI47_18520	0.38	+1.2
3,940,036	+		IAI47_18520	0.38	+0.6
3,940,036	+		IAI47_18520	0.38	+2.4
3,940,037	-		IAI47_18520	0.38	+1.1
3,940,037	-		IAI47_18520	0.38	+0.4
3,940,037	-		IAI47_18520	0.38	-0.1
3,940,057	+		IAI47_18520	0.40	-0.5
3,940,057	+		IAI47_18520	0.40	+2.5
3,940,058	-		IAI47_18520	0.40	+2.7
3,940,076	-		IAI47_18520	0.42	+1.8
3,940,076	-		IAI47_18520	0.42	+1.5
3,940,111	+		IAI47_18520	0.45	+1.3
3,940,112	-		IAI47_18520	0.45	+1.0
3,940,120	+		IAI47_18520	0.46	-0.6
3,940,120	+		IAI47_18520	0.46	+2.1
3,940,120	+		IAI47_18520	0.46	+0.6
3,940,120	+		IAI47_18520	0.46	+1.3
3,940,121	-		IAI47_18520	0.46	+0.9
3,940,121	-		IAI47_18520	0.46	+1.0
3,940,121	-		IAI47_18520	0.46	+1.2
3,940,121	-		IAI47_18520	0.46	+1.3
3,940,121	-		IAI47_18520	0.46	+1.4
3,940,122	+		IAI47_18520	0.46	-3.2
3,940,122	+		IAI47_18520	0.46	-1.1
3,940,122	+		IAI47_18520	0.46	+1.2
3,940,123	-		IAI47_18520	0.46	+2.2
3,940,123	-		IAI47_18520	0.46	+2.4
3,940,123	-		IAI47_18520	0.46	-1.0
3,940,123	-		IAI47_18520	0.46	+0.8
3,940,123	-		IAI47_18520	0.46	+1.2
3,940,123	-		IAI47_18520	0.46	+0.1
3,940,185	+		IAI47_18520	0.52	-2.6
3,940,186	-		IAI47_18520	0.52	+0.8
3,940,186	-		IAI47_18520	0.52	+0.6
3,940,186	-		IAI47_18520	0.52	+2.0
3,940,186	-		IAI47_18520	0.52	+1.2
3,940,186	-		IAI47_18520	0.52	+1.4
3,940,258	+		IAI47_18520	0.59	+1.5
3,940,258	+		IAI47_18520	0.59	+1.9
3,940,258	+		IAI47_18520	0.59	+0.6
3,940,258	+		IAI47_18520	0.59	+1.5
3,940,259	-		IAI47_18520	0.59	+2.6
3,940,259	-		IAI47_18520	0.59	+2.0
3,940,259	-		IAI47_18520	0.59	+1.4
3,940,259	-		IAI47_18520	0.59	+0.5
3,940,259	-		IAI47_18520	0.59	+1.9
3,940,261	+		IAI47_18520	0.59	+0.3
3,940,261	+		IAI47_18520	0.59	+1.1
3,940,261	+		IAI47_18520	0.59	-0.3
3,940,262	-		IAI47_18520	0.59	+0.7
3,940,262	-		IAI47_18520	0.59	+1.5
3,940,262	-		IAI47_18520	0.59	+1.4
3,940,305	+		IAI47_18520	0.63	+1.7
3,940,305	+		IAI47_18520	0.63	+1.3
3,940,305	+		IAI47_18520	0.63	+0.5
3,940,305	+		IAI47_18520	0.63	+1.6
3,940,305	+		IAI47_18520	0.63	+1.4
3,940,306	-		IAI47_18520	0.63	+0.9
3,940,306	-		IAI47_18520	0.63	+1.9
3,940,306	-		IAI47_18520	0.63	+1.9
3,940,324	+		IAI47_18520	0.65	+2.3
3,940,325	-		IAI47_18520	0.65	+1.4
3,940,345	+		IAI47_18520	0.67	+2.1
3,940,346	-		IAI47_18520	0.67	+1.7
3,940,365	+		IAI47_18520	0.69	+2.1
3,940,366	-		IAI47_18520	0.69	+0.5
3,940,366	-		IAI47_18520	0.69	+1.6
3,940,436	-		IAI47_18520	0.75	+2.5
3,940,436	-		IAI47_18520	0.75	+0.9
3,940,491	+		IAI47_18520	0.80	+1.0
3,940,491	+		IAI47_18520	0.80	+1.1
3,940,491	+		IAI47_18520	0.80	+1.1
3,940,492	-		IAI47_18520	0.80	+1.8
3,940,492	-		IAI47_18520	0.80	+0.6
3,940,492	-		IAI47_18520	0.80	+1.6
3,940,492	-		IAI47_18520	0.80	+0.9
3,940,492	-		IAI47_18520	0.80	+0.8
3,940,512	+		IAI47_18520	0.82	+1.5
3,940,513	-		IAI47_18520	0.82	+0.6
3,940,513	-		IAI47_18520	0.82	+1.3
3,940,515	+		IAI47_18520	0.83	+0.3
3,940,515	+		IAI47_18520	0.83	+0.8
3,940,515	+		IAI47_18520	0.83	+0.4
3,940,515	+		IAI47_18520	0.83	+0.9
3,940,515	+		IAI47_18520	0.83	+1.3
3,940,515	+		IAI47_18520	0.83	+0.5
3,940,515	+		IAI47_18520	0.83	+2.0
3,940,515	+		IAI47_18520	0.83	+1.5
3,940,515	+		IAI47_18520	0.83	+0.9
3,940,515	+		IAI47_18520	0.83	+0.2
3,940,516	-		IAI47_18520	0.83	+1.1
3,940,516	-		IAI47_18520	0.83	+1.4
3,940,516	-		IAI47_18520	0.83	+1.6
3,940,516	-		IAI47_18520	0.83	+1.6
3,940,516	-		IAI47_18520	0.83	+1.8
3,940,534	+		IAI47_18520	0.84	+0.5
3,940,534	+		IAI47_18520	0.84	+1.6
3,940,535	-		IAI47_18520	0.84	+1.1
3,940,535	-		IAI47_18520	0.84	+1.9
3,940,535	-		IAI47_18520	0.84	+0.9
3,940,544	-		IAI47_18520	0.85	+0.5
3,940,544	-		IAI47_18520	0.85	+1.2
3,940,597	+				+0.8
3,940,597	+				+0.9
3,940,597	+				+1.6
3,940,598	-				+1.0
3,940,606	+				+0.6
3,940,606	+				+1.1
3,940,606	+				+1.0
3,940,607	-				-0.7
3,940,607	-				+1.5
3,940,607	-				+0.6
3,940,612	+				+1.4
3,940,619	+				+1.8
3,940,619	+				+0.0
3,940,619	+				+1.4
3,940,619	+				+1.8
3,940,620	-				+0.2
3,940,620	-				+2.0
3,940,620	-				+0.8
3,940,696	+				+1.4
3,940,696	+				+1.6
3,940,696	+				+1.1
3,940,697	-				+1.2
3,940,702	+				+2.6
3,940,702	+				+1.4
3,940,702	+				+0.4
3,940,702	+				+1.7
3,940,702	+				+1.5
3,940,702	+				+0.4
3,940,702	+				+0.8
3,940,702	+				+2.3
3,940,703	-				+1.1
3,940,703	-				-0.1
3,940,703	-				+1.2
3,940,703	-				+0.4
3,940,703	-				+1.1
3,940,703	-				+0.8
3,940,703	-				+1.4
3,940,703	-				-0.9
3,940,709	+				+1.2
3,940,710	-				+1.7
3,940,710	-				-0.1
3,940,710	-				-0.1
3,940,720	+				-0.3
3,940,734	+				+1.1
3,940,734	+				+1.8
3,940,734	+				+1.6
3,940,734	+				+0.1
3,940,735	-				+2.0
3,940,735	-				-1.6
3,940,735	-				-0.6
3,940,735	-				+1.4
3,940,735	-				+2.0
3,940,752	+				+0.6
3,940,752	+				-0.1
3,940,752	+				+0.5
3,940,752	+				+1.0
3,940,753	-				-0.4
3,940,753	-				+1.0
3,940,753	-				+0.4
3,940,800	+				+0.5
3,940,800	+				+0.7
3,940,800	+				+2.0
3,940,801	-				+1.0
3,940,801	-				+0.6
3,940,801	-				+1.1
3,940,801	-				-2.1
3,940,836	+				-0.3
3,940,836	+				-1.9
3,940,848	+				-1.7
3,940,848	+				+1.5
3,940,848	+				+0.4
3,940,848	+				-2.5
3,940,848	+				+0.1
3,940,848	+				+0.8
3,940,848	+				-0.1
3,940,849	-				-0.0
3,940,849	-				-2.8
3,940,849	-				-1.0
3,940,850	+				+0.5
3,940,850	+				+0.5
3,940,851	-				-3.6
3,940,851	-				+0.2
3,940,851	-				-2.2
3,940,876	+				+0.5
3,940,876	+				-0.8
3,940,876	+				+0.7
3,940,877	-				+1.1
3,940,877	-				-2.7
3,940,877	-				+0.2
3,940,877	-				-0.2
3,940,877	-				+0.1
3,940,878	+				-0.5
3,940,878	+				+0.0
3,940,879	-				+0.8
3,940,879	-				+0.4
3,940,916	+				-0.9
3,940,916	+				-2.1
3,940,917	-				+1.1
3,940,984	+				+0.5
3,940,985	-				+1.4
3,940,985	-				-0.8
3,942,296	-				-2.5
3,942,305	-				-0.5
3,942,305	-				-2.3
3,942,305	-				-1.5
3,942,305	-				-1.6
3,942,305	-				-0.7
3,942,435	-				+0.4
3,942,435	-				-2.9
3,942,435	-				-2.3
3,942,435	-				+0.5
3,942,435	-				-1.1
3,942,435	-				-0.8
3,942,441	-				-0.7
3,942,441	-				+1.2
3,942,441	-				-1.0
3,942,443	-				-0.7
3,942,443	-				-2.1
3,942,443	-				+0.4
3,942,443	-				+1.7
3,942,443	-				-0.5
3,942,481	-				+0.7
3,942,488	-				+1.9
3,942,488	-				+0.6
3,942,488	-				-3.2
3,942,488	-				-1.5
3,942,488	-				-3.1
3,942,488	-				+0.6
3,942,488	-				-0.5
3,942,492	-				-0.2
3,942,492	-				-2.0
3,942,499	-				+0.1
3,942,499	-				+0.4
3,942,499	-				+0.7
3,942,499	-				+1.4
3,942,507	-				-0.1
3,942,521	-				-0.4
3,942,526	-				-3.5
3,942,526	-				-0.3
3,942,526	-				-0.2
3,942,562	-				-1.3
3,942,595	+				-0.0
3,942,595	+				+0.0
3,942,595	+				+1.2
3,942,595	+				+1.0
3,942,595	+				-0.8
3,942,596	-				+0.9
3,942,713	-		IAI47_18530	0.36	-0.8
3,942,775	+		IAI47_18530	0.54	-2.9
3,942,776	-		IAI47_18530	0.55	-4.1
3,942,854	+		IAI47_18530	0.78	-0.0
3,942,855	-		IAI47_18530	0.78	-3.0
3,942,945	-				-0.6
3,942,945	-				+0.9
3,942,968	+				-3.1
3,942,969	-				-1.3
3,942,969	-				-0.8
3,942,969	-				+2.0
3,942,969	-				-1.6
3,942,970	+				-1.0
3,942,989	+				+0.0
3,942,990	-				+1.2
3,943,001	+				+0.6
3,943,019	+				-3.0
3,943,023	-				-0.8
3,943,030	+				-2.0
3,943,035	+				+1.4
3,943,043	+				-1.2
3,943,043	+				-1.2
3,943,044	-				-2.5
3,943,044	-				-1.8
3,943,044	-				-2.8
3,943,044	-				+1.2
3,943,121	+				+0.5
3,943,170	-				-2.2