Strain Fitness in Pantoea sp. MT58 around IAI47_18515

Experiment: nitrogen source nitrite 1mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrogen source nitrite 1mM
3,937,573	-		IAI47_18510	0.15	+1.4
3,937,629	+		IAI47_18510	0.20	-0.4
3,937,715	+		IAI47_18510	0.27	-2.2
3,937,715	+		IAI47_18510	0.27	-2.6
3,937,715	+		IAI47_18510	0.27	-0.4
3,937,716	-		IAI47_18510	0.27	-0.6
3,937,716	-		IAI47_18510	0.27	-0.2
3,937,740	+		IAI47_18510	0.29	-1.1
3,937,740	+		IAI47_18510	0.29	+0.8
3,937,741	-		IAI47_18510	0.30	+0.8
3,937,741	-		IAI47_18510	0.30	-2.7
3,937,741	-		IAI47_18510	0.30	+1.0
3,937,742	-		IAI47_18510	0.30	+1.2
3,937,806	-		IAI47_18510	0.35	-0.1
3,937,860	+		IAI47_18510	0.40	-1.7
3,937,860	+		IAI47_18510	0.40	-0.3
3,937,860	+		IAI47_18510	0.40	-1.4
3,937,861	-		IAI47_18510	0.40	-0.1
3,937,861	-		IAI47_18510	0.40	-1.7
3,938,019	+		IAI47_18510	0.54	-0.4
3,938,020	-		IAI47_18510	0.54	+0.7
3,938,020	-		IAI47_18510	0.54	-0.7
3,938,020	-		IAI47_18510	0.54	+0.3
3,938,088	+		IAI47_18510	0.60	-1.7
3,938,211	-		IAI47_18510	0.70	-0.0
3,938,211	-		IAI47_18510	0.70	+2.0
3,938,308	+		IAI47_18510	0.79	+0.5
3,938,322	+		IAI47_18510	0.80	+1.6
3,938,322	+		IAI47_18510	0.80	-0.1
3,938,322	+		IAI47_18510	0.80	+1.2
3,938,323	-		IAI47_18510	0.80	+0.8
3,938,323	-		IAI47_18510	0.80	-1.0
3,938,323	-		IAI47_18510	0.80	-1.9
3,938,323	-		IAI47_18510	0.80	-0.1
3,938,323	-		IAI47_18510	0.80	-0.8
3,938,323	-		IAI47_18510	0.80	+0.5
3,938,352	+		IAI47_18510	0.83	+0.7
3,938,352	+		IAI47_18510	0.83	+0.4
3,938,352	+		IAI47_18510	0.83	-0.0
3,938,353	-		IAI47_18510	0.83	-0.7
3,938,353	-		IAI47_18510	0.83	-2.2
3,938,353	-		IAI47_18510	0.83	+1.6
3,938,353	-		IAI47_18510	0.83	-0.8
3,938,353	-		IAI47_18510	0.83	-0.5
3,938,353	-		IAI47_18510	0.83	+0.8
3,938,353	-		IAI47_18510	0.83	-1.6
3,938,355	+		IAI47_18510	0.83	+0.4
3,938,355	+		IAI47_18510	0.83	-0.6
3,938,355	+		IAI47_18510	0.83	-0.7
3,938,355	+		IAI47_18510	0.83	-2.9
3,938,355	+		IAI47_18510	0.83	+0.1
3,938,356	-		IAI47_18510	0.83	-0.3
3,938,356	-		IAI47_18510	0.83	+0.0
3,938,356	-		IAI47_18510	0.83	+0.1
3,938,356	-		IAI47_18510	0.83	-2.2
3,938,356	-		IAI47_18510	0.83	-1.9
3,938,356	-		IAI47_18510	0.83	-0.8
3,938,356	-		IAI47_18510	0.83	+0.6
3,938,358	+		IAI47_18510	0.83	+1.5
3,938,358	+		IAI47_18510	0.83	+0.0
3,938,358	+		IAI47_18510	0.83	-1.2
3,938,358	+		IAI47_18510	0.83	+0.9
3,938,358	+		IAI47_18510	0.83	-3.9
3,938,359	-		IAI47_18510	0.83	+1.1
3,938,359	-		IAI47_18510	0.83	-2.1
3,938,359	-		IAI47_18510	0.83	+0.4
3,938,359	-		IAI47_18510	0.83	+0.1
3,938,367	-		IAI47_18510	0.84	+1.8
3,938,367	-		IAI47_18510	0.84	-1.3
3,938,490	+				+0.3
3,938,491	-				-0.4
3,938,508	+				-1.7
3,938,509	-				-0.7
3,938,515	+				+0.3
3,938,515	+				+0.3
3,938,515	+				-0.3
3,938,515	+				-0.3
3,938,516	-				-0.9
3,938,516	-				-0.1
3,938,516	-				-0.7
3,938,516	-				-0.7
3,938,604	-				-0.2
3,938,604	-				+1.7
3,938,604	-				+1.0
3,938,626	+				-0.5
3,938,626	+				+0.8
3,938,626	+				-0.0
3,938,626	+				-1.2
3,938,626	+				+1.8
3,938,626	+				+1.0
3,938,626	+				+1.0
3,938,626	+				-1.2
3,938,626	+				+0.5
3,938,626	+				+1.2
3,938,626	+				+0.8
3,938,626	+				-1.2
3,938,626	+				+1.1
3,938,627	-				-0.2
3,938,627	-				-2.6
3,938,627	-				+0.7
3,938,627	-				-0.5
3,938,627	-				+1.5
3,938,627	-				+0.8
3,938,627	-				+0.8
3,938,627	-				-0.6
3,938,627	-				-1.6
3,938,627	-				-0.2
3,938,627	-				-0.2
3,938,627	-				+0.1
3,938,627	-				-0.4
3,938,664	-		IAI47_18515	0.12	-2.5
3,938,664	-		IAI47_18515	0.12	+1.4
3,938,689	-		IAI47_18515	0.14	-1.2
3,938,689	-		IAI47_18515	0.14	+0.6
3,938,694	+		IAI47_18515	0.14	+1.2
3,938,694	+		IAI47_18515	0.14	+1.5
3,938,694	+		IAI47_18515	0.14	-1.8
3,938,695	-		IAI47_18515	0.14	+0.5
3,938,695	-		IAI47_18515	0.14	+0.0
3,938,695	-		IAI47_18515	0.14	+1.1
3,938,695	-		IAI47_18515	0.14	-0.0
3,938,763	+		IAI47_18515	0.21	+0.3
3,938,764	-		IAI47_18515	0.21	+1.7
3,938,764	-		IAI47_18515	0.21	-1.6
3,938,764	-		IAI47_18515	0.21	+0.7
3,938,764	-		IAI47_18515	0.21	-0.2
3,938,764	-		IAI47_18515	0.21	+0.4
3,938,764	-		IAI47_18515	0.21	+1.0
3,938,764	-		IAI47_18515	0.21	-0.1
3,938,770	+		IAI47_18515	0.22	-0.1
3,938,770	+		IAI47_18515	0.22	-0.7
3,938,770	+		IAI47_18515	0.22	+0.1
3,938,890	+		IAI47_18515	0.33	+0.7
3,938,891	-		IAI47_18515	0.33	-1.8
3,938,891	-		IAI47_18515	0.33	+0.3
3,938,891	-		IAI47_18515	0.33	+0.0
3,938,960	-		IAI47_18515	0.40	-0.2
3,939,004	+		IAI47_18515	0.44	-0.6
3,939,004	+		IAI47_18515	0.44	-2.9
3,939,004	+		IAI47_18515	0.44	-2.3
3,939,005	-		IAI47_18515	0.44	+0.1
3,939,005	-		IAI47_18515	0.44	-1.2
3,939,005	-		IAI47_18515	0.44	-0.4
3,939,005	-		IAI47_18515	0.44	-0.4
3,939,005	-		IAI47_18515	0.44	+0.8
3,939,008	+		IAI47_18515	0.44	-0.9
3,939,009	-		IAI47_18515	0.44	+0.8
3,939,026	+		IAI47_18515	0.46	-0.6
3,939,026	+		IAI47_18515	0.46	+0.7
3,939,027	-		IAI47_18515	0.46	-2.7
3,939,027	-		IAI47_18515	0.46	-0.7
3,939,067	-		IAI47_18515	0.50	-2.5
3,939,067	-		IAI47_18515	0.50	+0.3
3,939,075	+		IAI47_18515	0.51	-2.2
3,939,075	+		IAI47_18515	0.51	+0.7
3,939,075	+		IAI47_18515	0.51	-3.1
3,939,075	+		IAI47_18515	0.51	+0.2
3,939,075	+		IAI47_18515	0.51	-2.1
3,939,076	-		IAI47_18515	0.51	+0.6
3,939,076	-		IAI47_18515	0.51	-3.5
3,939,076	-		IAI47_18515	0.51	+0.5
3,939,076	-		IAI47_18515	0.51	-0.0
3,939,076	-		IAI47_18515	0.51	-0.6
3,939,086	+		IAI47_18515	0.52	-0.0
3,939,087	-		IAI47_18515	0.52	-0.0
3,939,091	+		IAI47_18515	0.52	-0.7
3,939,091	+		IAI47_18515	0.52	+0.0
3,939,092	-		IAI47_18515	0.52	-1.2
3,939,142	+		IAI47_18515	0.57	-0.7
3,939,142	+		IAI47_18515	0.57	-1.3
3,939,142	+		IAI47_18515	0.57	-2.9
3,939,142	+		IAI47_18515	0.57	+0.7
3,939,163	+		IAI47_18515	0.59	+0.7
3,939,163	+		IAI47_18515	0.59	-0.9
3,939,172	+		IAI47_18515	0.60	-1.3
3,939,184	+		IAI47_18515	0.61	-0.3
3,939,184	+		IAI47_18515	0.61	+0.8
3,939,184	+		IAI47_18515	0.61	+1.2
3,939,184	+		IAI47_18515	0.61	-1.7
3,939,184	+		IAI47_18515	0.61	-0.5
3,939,185	-		IAI47_18515	0.61	+0.1
3,939,209	-		IAI47_18515	0.63	+0.6
3,939,240	+		IAI47_18515	0.66	-0.7
3,939,241	-		IAI47_18515	0.66	-0.2
3,939,241	-		IAI47_18515	0.66	+0.4
3,939,241	-		IAI47_18515	0.66	+0.5
3,939,306	+		IAI47_18515	0.73	+0.2
3,939,307	-		IAI47_18515	0.73	+2.6
3,939,307	-		IAI47_18515	0.73	-1.8
3,939,347	+		IAI47_18515	0.77	-2.4
3,939,347	+		IAI47_18515	0.77	-0.5
3,939,347	+		IAI47_18515	0.77	-1.5
3,939,347	+		IAI47_18515	0.77	+0.6
3,939,348	-		IAI47_18515	0.77	-0.3
3,939,348	-		IAI47_18515	0.77	+0.4
3,939,348	-		IAI47_18515	0.77	-1.3
3,939,396	+		IAI47_18515	0.81	-0.8
3,939,396	+		IAI47_18515	0.81	-0.4
3,939,396	+		IAI47_18515	0.81	-0.6
3,939,396	+		IAI47_18515	0.81	-1.9
3,939,396	+		IAI47_18515	0.81	-0.2
3,939,396	+		IAI47_18515	0.81	-0.5
3,939,397	-		IAI47_18515	0.81	-1.8
3,939,397	-		IAI47_18515	0.81	+0.6
3,939,397	-		IAI47_18515	0.81	-1.0
3,939,397	-		IAI47_18515	0.81	+1.8
3,939,397	-		IAI47_18515	0.81	+0.9
3,939,399	+		IAI47_18515	0.82	-0.1
3,939,399	+		IAI47_18515	0.82	+0.8
3,939,399	+		IAI47_18515	0.82	-0.2
3,939,399	+		IAI47_18515	0.82	-0.4
3,939,399	+		IAI47_18515	0.82	+0.3
3,939,400	-		IAI47_18515	0.82	-0.1
3,939,400	-		IAI47_18515	0.82	-0.7
3,939,400	-		IAI47_18515	0.82	-3.0
3,939,400	-		IAI47_18515	0.82	-0.3
3,939,537	-				+0.3
3,939,559	+				+1.6
3,939,601	+				-1.3
3,939,602	-				+3.1
3,939,602	-				-0.4
3,939,602	-				-0.3
3,939,602	-				+1.0
3,939,602	-				+1.7
3,939,608	+				+0.7
3,939,609	-				+1.1
3,939,628	+				+0.5
3,939,628	+				+3.0
3,939,664	+				+1.2
3,939,676	+				+0.4
3,939,677	-				-0.0
3,939,777	+		IAI47_18520	0.14	+1.6
3,939,778	-		IAI47_18520	0.14	-2.4
3,939,778	-		IAI47_18520	0.14	+1.4
3,939,825	-		IAI47_18520	0.19	-0.3
3,939,916	+		IAI47_18520	0.27	+1.2
3,939,916	+		IAI47_18520	0.27	+0.9
3,939,917	-		IAI47_18520	0.27	+1.9
3,939,930	+		IAI47_18520	0.28	-0.4
3,939,930	+		IAI47_18520	0.28	+1.4
3,939,930	+		IAI47_18520	0.28	+2.0
3,939,930	+		IAI47_18520	0.28	+0.7
3,939,930	+		IAI47_18520	0.28	+0.6
3,939,930	+		IAI47_18520	0.28	+0.7
3,939,930	+		IAI47_18520	0.28	+2.9
3,939,930	+		IAI47_18520	0.28	+0.5
3,939,931	-		IAI47_18520	0.29	+0.5
3,939,931	-		IAI47_18520	0.29	-0.3
3,939,931	-		IAI47_18520	0.29	+1.8
3,939,931	-		IAI47_18520	0.29	+1.3
3,939,931	-		IAI47_18520	0.29	+1.3
3,939,931	-		IAI47_18520	0.29	+2.0
3,939,931	-		IAI47_18520	0.29	+1.9
3,939,931	-		IAI47_18520	0.29	+1.0
3,939,934	+		IAI47_18520	0.29	+0.4
3,939,934	+		IAI47_18520	0.29	+0.6
3,939,934	+		IAI47_18520	0.29	+0.7
3,939,934	+		IAI47_18520	0.29	+1.6
3,939,934	+		IAI47_18520	0.29	+0.3
3,939,934	+		IAI47_18520	0.29	+1.6
3,939,934	+		IAI47_18520	0.29	+0.5
3,939,934	+		IAI47_18520	0.29	+0.9
3,939,934	+		IAI47_18520	0.29	+1.3
3,939,934	+		IAI47_18520	0.29	+1.1
3,939,934	+		IAI47_18520	0.29	+1.1
3,939,934	+		IAI47_18520	0.29	+0.4
3,939,935	-		IAI47_18520	0.29	+1.3
3,939,935	-		IAI47_18520	0.29	+1.8
3,939,935	-		IAI47_18520	0.29	+0.8
3,939,935	-		IAI47_18520	0.29	+1.3
3,939,935	-		IAI47_18520	0.29	+1.2
3,939,935	-		IAI47_18520	0.29	+1.3
3,939,935	-		IAI47_18520	0.29	+1.1
3,939,946	+		IAI47_18520	0.30	-0.4
3,939,946	+		IAI47_18520	0.30	+1.1
3,939,946	+		IAI47_18520	0.30	+0.4
3,939,947	-		IAI47_18520	0.30	+0.6
3,939,947	-		IAI47_18520	0.30	+2.0
3,939,947	-		IAI47_18520	0.30	+0.9
3,939,948	+		IAI47_18520	0.30	+0.7
3,939,949	-		IAI47_18520	0.30	+1.8
3,939,967	+		IAI47_18520	0.32	+1.4
3,939,967	+		IAI47_18520	0.32	+0.3
3,939,967	+		IAI47_18520	0.32	+1.2
3,939,968	-		IAI47_18520	0.32	+0.9
3,939,968	-		IAI47_18520	0.32	+1.4
3,939,968	-		IAI47_18520	0.32	+0.7
3,939,968	-		IAI47_18520	0.32	+0.9
3,939,991	+		IAI47_18520	0.34	+0.2
3,940,036	+		IAI47_18520	0.38	+1.2
3,940,036	+		IAI47_18520	0.38	+0.6
3,940,036	+		IAI47_18520	0.38	+2.4
3,940,037	-		IAI47_18520	0.38	+1.1
3,940,037	-		IAI47_18520	0.38	+0.4
3,940,037	-		IAI47_18520	0.38	-0.1
3,940,057	+		IAI47_18520	0.40	-0.5
3,940,057	+		IAI47_18520	0.40	+2.5
3,940,058	-		IAI47_18520	0.40	+2.7
3,940,076	-		IAI47_18520	0.42	+1.8
3,940,076	-		IAI47_18520	0.42	+1.5
3,940,111	+		IAI47_18520	0.45	+1.3
3,940,112	-		IAI47_18520	0.45	+1.0
3,940,120	+		IAI47_18520	0.46	-0.6
3,940,120	+		IAI47_18520	0.46	+2.1
3,940,120	+		IAI47_18520	0.46	+0.6
3,940,120	+		IAI47_18520	0.46	+1.3
3,940,121	-		IAI47_18520	0.46	+0.9
3,940,121	-		IAI47_18520	0.46	+1.0
3,940,121	-		IAI47_18520	0.46	+1.2
3,940,121	-		IAI47_18520	0.46	+1.3
3,940,121	-		IAI47_18520	0.46	+1.4
3,940,122	+		IAI47_18520	0.46	-3.2
3,940,122	+		IAI47_18520	0.46	-1.1
3,940,122	+		IAI47_18520	0.46	+1.2
3,940,123	-		IAI47_18520	0.46	+2.2
3,940,123	-		IAI47_18520	0.46	+2.4
3,940,123	-		IAI47_18520	0.46	-1.0
3,940,123	-		IAI47_18520	0.46	+0.8
3,940,123	-		IAI47_18520	0.46	+1.2
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