Strain Fitness in Pantoea sp. MT58 around IAI47_11230

Experiment: nitrogen source nitrite 1mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrogen source nitrite 1mM
2,373,346	+				+1.0
2,373,347	-				-1.7
2,373,353	+				-0.2
2,373,391	+				-0.1
2,373,392	-				+0.3
2,373,422	+				+2.4
2,373,422	+				+0.2
2,373,422	+				-0.1
2,373,423	-				+0.2
2,373,423	-				-0.3
2,373,423	-				+0.7
2,373,423	-				-0.9
2,373,449	+		IAI47_11225	0.11	-0.3
2,373,449	+		IAI47_11225	0.11	-0.2
2,373,449	+		IAI47_11225	0.11	-0.7
2,373,449	+		IAI47_11225	0.11	+1.4
2,373,449	+		IAI47_11225	0.11	+1.3
2,373,449	+		IAI47_11225	0.11	+0.0
2,373,450	-		IAI47_11225	0.11	-0.9
2,373,450	-		IAI47_11225	0.11	-2.1
2,373,457	+		IAI47_11225	0.12	+0.3
2,373,490	+		IAI47_11225	0.15	-0.9
2,373,490	+		IAI47_11225	0.15	+0.0
2,373,490	+		IAI47_11225	0.15	-1.5
2,373,491	-		IAI47_11225	0.15	+0.1
2,373,491	-		IAI47_11225	0.15	+0.3
2,373,491	-		IAI47_11225	0.15	+2.7
2,373,523	+		IAI47_11225	0.18	-1.7
2,373,524	-		IAI47_11225	0.19	-0.7
2,373,685	+		IAI47_11225	0.35	-2.0
2,373,686	-		IAI47_11225	0.36	-0.9
2,373,686	-		IAI47_11225	0.36	-1.1
2,373,686	-		IAI47_11225	0.36	-1.6
2,373,686	-		IAI47_11225	0.36	-0.7
2,373,760	+		IAI47_11225	0.43	-2.0
2,373,760	+		IAI47_11225	0.43	-0.8
2,373,761	-		IAI47_11225	0.43	+1.7
2,373,761	-		IAI47_11225	0.43	+0.7
2,373,841	+		IAI47_11225	0.52	+1.4
2,373,841	+		IAI47_11225	0.52	-0.9
2,373,842	-		IAI47_11225	0.52	+1.5
2,373,842	-		IAI47_11225	0.52	-2.6
2,373,843	+		IAI47_11225	0.52	+1.5
2,373,844	-		IAI47_11225	0.52	+0.9
2,373,950	+		IAI47_11225	0.63	+2.3
2,373,950	+		IAI47_11225	0.63	+1.6
2,373,950	+		IAI47_11225	0.63	+1.7
2,373,950	+		IAI47_11225	0.63	+1.5
2,373,950	+		IAI47_11225	0.63	+2.9
2,373,950	+		IAI47_11225	0.63	+0.6
2,373,950	+		IAI47_11225	0.63	+1.1
2,373,950	+		IAI47_11225	0.63	+1.3
2,373,950	+		IAI47_11225	0.63	+2.2
2,373,951	-		IAI47_11225	0.63	+0.3
2,373,951	-		IAI47_11225	0.63	+1.8
2,373,951	-		IAI47_11225	0.63	-0.8
2,373,951	-		IAI47_11225	0.63	-0.8
2,374,015	+		IAI47_11225	0.70	+0.5
2,374,015	+		IAI47_11225	0.70	+1.0
2,374,015	+		IAI47_11225	0.70	+0.8
2,374,015	+		IAI47_11225	0.70	-0.6
2,374,015	+		IAI47_11225	0.70	+0.6
2,374,015	+		IAI47_11225	0.70	+1.8
2,374,015	+		IAI47_11225	0.70	+2.0
2,374,016	-		IAI47_11225	0.70	-1.0
2,374,054	+		IAI47_11225	0.74	+1.6
2,374,055	-		IAI47_11225	0.74	-2.1
2,374,055	-		IAI47_11225	0.74	-1.6
2,374,120	+		IAI47_11225	0.81	+1.3
2,374,121	-		IAI47_11225	0.81	-2.5
2,374,130	-		IAI47_11225	0.82	+0.1
2,374,178	-		IAI47_11225	0.87	-1.1
2,374,202	+		IAI47_11225	0.90	-1.2
2,374,202	+		IAI47_11225	0.90	-1.5
2,374,202	+		IAI47_11225	0.90	+0.6
2,374,203	-		IAI47_11225	0.90	-0.7
2,374,233	+				+1.3
2,374,233	+				+2.5
2,374,233	+				+1.5
2,374,233	+				+2.0
2,374,233	+				+2.5
2,374,233	+				+3.2
2,374,234	-				+1.2
2,374,234	-				+0.2
2,374,234	-				-0.4
2,374,237	+				+2.2
2,374,237	+				+3.0
2,374,238	-				+0.5
2,374,238	-				-0.4
2,374,288	+				+2.1
2,374,298	+				-0.1
2,374,299	-				-3.5
2,374,299	-				-1.4
2,374,330	+				+0.6
2,374,331	-				-0.9
2,374,344	+				+1.3
2,374,344	+				-0.3
2,374,344	+				-2.2
2,374,344	+				+0.3
2,374,345	-				-0.1
2,374,345	-				-0.1
2,374,345	-				+0.6
2,374,359	+				-1.6
2,374,359	+				+0.7
2,374,359	+				+0.3
2,374,360	-				+1.6
2,374,360	-				-1.2
2,374,362	+				-1.1
2,374,362	+				-0.9
2,374,363	-				+0.5
2,374,404	+				-1.1
2,374,405	-				-0.5
2,374,456	+				-0.5
2,374,456	+				-0.6
2,374,494	+		IAI47_11230	0.10	-1.0
2,374,495	-		IAI47_11230	0.10	-1.2
2,374,496	+		IAI47_11230	0.11	-1.6
2,374,504	+		IAI47_11230	0.11	-0.8
2,374,504	+		IAI47_11230	0.11	-1.9
2,374,504	+		IAI47_11230	0.11	-0.0
2,374,504	+		IAI47_11230	0.11	+0.0
2,374,505	-		IAI47_11230	0.11	+1.3
2,374,505	-		IAI47_11230	0.11	-2.1
2,374,505	-		IAI47_11230	0.11	-3.1
2,374,505	-		IAI47_11230	0.11	+0.7
2,374,505	-		IAI47_11230	0.11	-0.3
2,374,506	+		IAI47_11230	0.11	-1.7
2,374,506	+		IAI47_11230	0.11	+0.1
2,374,506	+		IAI47_11230	0.11	-1.1
2,374,506	+		IAI47_11230	0.11	-0.2
2,374,506	+		IAI47_11230	0.11	+0.1
2,374,507	-		IAI47_11230	0.11	+0.2
2,374,507	-		IAI47_11230	0.11	-2.1
2,374,507	-		IAI47_11230	0.11	-3.3
2,374,507	-		IAI47_11230	0.11	-0.5
2,374,602	+		IAI47_11230	0.18	-1.9
2,374,602	+		IAI47_11230	0.18	-1.2
2,374,632	+		IAI47_11230	0.20	-0.9
2,374,632	+		IAI47_11230	0.20	-1.0
2,374,632	+		IAI47_11230	0.20	-1.2
2,374,633	-		IAI47_11230	0.20	-0.3
2,374,687	+		IAI47_11230	0.24	-0.6
2,374,687	+		IAI47_11230	0.24	-1.1
2,374,687	+		IAI47_11230	0.24	-1.0
2,374,687	+		IAI47_11230	0.24	-0.8
2,374,687	+		IAI47_11230	0.24	+0.4
2,374,688	-		IAI47_11230	0.24	-1.0
2,374,688	-		IAI47_11230	0.24	+0.1
2,374,688	-		IAI47_11230	0.24	-0.9
2,374,688	-		IAI47_11230	0.24	-0.3
2,374,688	-		IAI47_11230	0.24	-0.1
2,374,688	-		IAI47_11230	0.24	-0.4
2,374,688	-		IAI47_11230	0.24	-0.9
2,374,689	+		IAI47_11230	0.24	-0.8
2,374,689	+		IAI47_11230	0.24	+1.0
2,374,689	+		IAI47_11230	0.24	-1.4
2,374,689	+		IAI47_11230	0.24	-1.4
2,374,689	+		IAI47_11230	0.24	-0.4
2,374,689	+		IAI47_11230	0.24	+0.8
2,374,690	-		IAI47_11230	0.24	-1.3
2,374,702	+		IAI47_11230	0.25	-2.4
2,374,702	+		IAI47_11230	0.25	-0.2
2,374,702	+		IAI47_11230	0.25	-0.0
2,374,703	-		IAI47_11230	0.25	+1.1
2,374,705	+		IAI47_11230	0.25	+0.1
2,374,705	+		IAI47_11230	0.25	+0.3
2,374,706	-		IAI47_11230	0.25	+0.0
2,374,706	-		IAI47_11230	0.25	-0.8
2,374,706	-		IAI47_11230	0.25	-2.2
2,374,706	-		IAI47_11230	0.25	+0.5
2,374,737	+		IAI47_11230	0.27	+0.6
2,374,800	+		IAI47_11230	0.32	-0.3
2,374,825	+		IAI47_11230	0.34	-2.6
2,374,909	-		IAI47_11230	0.39	-0.2
2,374,909	-		IAI47_11230	0.39	-1.7
2,374,950	+		IAI47_11230	0.42	+0.4
2,374,950	+		IAI47_11230	0.42	-0.6
2,374,950	+		IAI47_11230	0.42	+0.1
2,374,950	+		IAI47_11230	0.42	+1.7
2,374,950	+		IAI47_11230	0.42	-1.7
2,374,951	-		IAI47_11230	0.42	-0.0
2,374,951	-		IAI47_11230	0.42	-2.7
2,374,979	-		IAI47_11230	0.44	+1.1
2,374,979	-		IAI47_11230	0.44	-0.5
2,375,019	+		IAI47_11230	0.47	+0.6
2,375,020	-		IAI47_11230	0.47	-0.9
2,375,020	-		IAI47_11230	0.47	-1.2
2,375,020	-		IAI47_11230	0.47	-0.9
2,375,023	+		IAI47_11230	0.47	+0.0
2,375,023	+		IAI47_11230	0.47	-0.4
2,375,023	+		IAI47_11230	0.47	-0.0
2,375,023	+		IAI47_11230	0.47	-1.3
2,375,023	+		IAI47_11230	0.47	-0.6
2,375,023	+		IAI47_11230	0.47	+0.0
2,375,023	+		IAI47_11230	0.47	+0.4
2,375,023	+		IAI47_11230	0.47	+0.5
2,375,024	-		IAI47_11230	0.47	+0.6
2,375,024	-		IAI47_11230	0.47	+3.4
2,375,024	-		IAI47_11230	0.47	-2.4
2,375,024	-		IAI47_11230	0.47	-3.0
2,375,046	+		IAI47_11230	0.49	+0.9
2,375,047	-		IAI47_11230	0.49	-2.2
2,375,100	+		IAI47_11230	0.53	+0.0
2,375,100	+		IAI47_11230	0.53	-0.1
2,375,100	+		IAI47_11230	0.53	+1.1
2,375,101	-		IAI47_11230	0.53	+1.5
2,375,104	+		IAI47_11230	0.53	-1.8
2,375,104	+		IAI47_11230	0.53	+0.3
2,375,137	+		IAI47_11230	0.55	-0.2
2,375,138	-		IAI47_11230	0.55	-1.1
2,375,376	+		IAI47_11230	0.72	+1.4
2,375,433	+		IAI47_11230	0.76	+0.7
2,375,433	+		IAI47_11230	0.76	-2.2
2,375,466	+		IAI47_11230	0.78	-0.9
2,375,467	-		IAI47_11230	0.78	+2.8
2,375,578	+		IAI47_11230	0.86	-0.6
2,375,578	+		IAI47_11230	0.86	-2.6
2,375,579	-		IAI47_11230	0.86	+0.9
2,375,579	-		IAI47_11230	0.86	-1.0
2,375,579	-		IAI47_11230	0.86	+0.1
2,375,579	-		IAI47_11230	0.86	+0.7
2,375,606	+		IAI47_11230	0.88	-1.6
2,375,606	+		IAI47_11230	0.88	-1.8
2,375,683	+				+1.3
2,375,690	+				+0.9
2,375,691	-				+1.1
2,375,739	+				+0.2
2,375,739	+				-0.5
2,375,739	+				-0.8
2,375,740	-				-0.5
2,375,740	-				+0.5
2,375,773	+				-0.7
2,375,774	-				+0.5
2,375,774	-				-0.1
2,375,774	-				-1.5
2,375,774	-				+0.5
2,375,774	-				+0.2
2,375,792	-				+1.1
2,375,792	-				+0.0
2,375,823	-				-2.0
2,375,823	-				-0.8
2,375,973	+		IAI47_11235	0.17	-1.2
2,375,973	+		IAI47_11235	0.17	+4.3
2,375,973	+		IAI47_11235	0.17	+0.5
2,375,973	+		IAI47_11235	0.17	-0.9
2,375,973	+		IAI47_11235	0.17	-0.7
2,375,974	-		IAI47_11235	0.17	+1.4
2,375,974	-		IAI47_11235	0.17	-0.7
2,375,974	-		IAI47_11235	0.17	+0.4
2,376,052	-		IAI47_11235	0.28	+1.3
2,376,052	-		IAI47_11235	0.28	-0.2
2,376,073	+		IAI47_11235	0.31	-0.1
2,376,074	-		IAI47_11235	0.32	+1.0
2,376,074	-		IAI47_11235	0.32	-0.3
2,376,074	-		IAI47_11235	0.32	+2.6
2,376,076	+		IAI47_11235	0.32	-1.6
2,376,076	+		IAI47_11235	0.32	+0.0
2,376,076	+		IAI47_11235	0.32	+0.2
2,376,076	+		IAI47_11235	0.32	-0.0
2,376,077	-		IAI47_11235	0.32	-0.7
2,376,077	-		IAI47_11235	0.32	+0.7
2,376,077	-		IAI47_11235	0.32	+1.3
2,376,077	-		IAI47_11235	0.32	-0.2
2,376,116	+		IAI47_11235	0.38	-0.0
2,376,116	+		IAI47_11235	0.38	-2.8
2,376,116	+		IAI47_11235	0.38	+0.5
2,376,116	+		IAI47_11235	0.38	-0.9
2,376,134	+		IAI47_11235	0.40	+1.0
2,376,134	+		IAI47_11235	0.40	-0.5
2,376,135	-		IAI47_11235	0.41	-0.7
2,376,135	-		IAI47_11235	0.41	+0.3
2,376,135	-		IAI47_11235	0.41	-3.1
2,376,138	+		IAI47_11235	0.41	+0.5
2,376,139	-		IAI47_11235	0.41	-0.6
2,376,139	-		IAI47_11235	0.41	-0.7
2,376,188	+		IAI47_11235	0.48	+0.8
2,376,188	+		IAI47_11235	0.48	+0.7
2,376,188	+		IAI47_11235	0.48	+1.5
2,376,188	+		IAI47_11235	0.48	+0.1
2,376,188	+		IAI47_11235	0.48	+0.8
2,376,188	+		IAI47_11235	0.48	+0.1
2,376,188	+		IAI47_11235	0.48	+1.3
2,376,189	-		IAI47_11235	0.49	-0.1
2,376,189	-		IAI47_11235	0.49	+1.7
2,376,189	-		IAI47_11235	0.49	+0.7
2,376,189	-		IAI47_11235	0.49	-0.4
2,376,189	-		IAI47_11235	0.49	-0.3
2,376,189	-		IAI47_11235	0.49	-1.9
2,376,467	+		IAI47_11235	0.90	-2.5
2,376,468	-				-1.0
2,376,499	+				+1.2
2,376,499	+				-0.3
2,376,499	+				-0.2
2,376,499	+				+1.3
2,376,500	-				-1.9
2,376,512	+				+2.1
2,376,581	-				-0.7
2,376,581	-				+0.2
2,376,581	-				+1.0
2,376,617	+				-1.6
2,376,628	+				-0.2
2,376,628	+				-0.6
2,376,628	+				+0.6
2,376,628	+				+0.2
2,376,629	-				-0.1
2,376,629	-				-2.2
2,376,633	+				+0.6
2,376,634	-				-0.3
2,376,634	-				-0.6
2,376,638	-				-1.2
2,376,689	-				+1.1
2,376,751	+				-0.6
2,376,751	+				+0.5
2,376,751	+				-0.2
2,376,751	+				+2.4
2,376,752	-				+0.9
2,376,752	-				+0.9
2,376,752	-				-2.1
2,376,752	-				+0.5
2,376,770	+				+0.5
2,376,770	+				-0.5
2,376,770	+				+0.3
2,376,771	-				+0.2
2,376,771	-				+0.5