Strain Fitness in Pantoea sp. MT58 around IAI47_04415

Experiment: nitrogen source nitrite 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_04410 and IAI47_04415 are separated by 235 nucleotidesIAI47_04415 and IAI47_04420 are separated by 280 nucleotides IAI47_04410: IAI47_04410 - bifunctional chorismate mutase/prephenate dehydratase, at 924,076 to 925,251 _04410 IAI47_04415: IAI47_04415 - ribosome-associated translation inhibitor RaiA, at 925,487 to 925,822 _04415 IAI47_04420: IAI47_04420 - outer membrane protein assembly factor BamD, at 926,103 to 926,834 _04420 Position (kb) 925 926Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 924.496 kb on + strand, within IAI47_04410at 924.496 kb on + strand, within IAI47_04410at 924.497 kb on - strand, within IAI47_04410at 924.497 kb on - strand, within IAI47_04410at 924.497 kb on - strand, within IAI47_04410at 924.497 kb on - strand, within IAI47_04410at 924.497 kb on - strand, within IAI47_04410at 924.497 kb on - strand, within IAI47_04410at 924.497 kb on - strand, within IAI47_04410at 924.497 kb on - strand, within IAI47_04410at 924.510 kb on + strand, within IAI47_04410at 924.510 kb on + strand, within IAI47_04410at 924.510 kb on + strand, within IAI47_04410at 924.510 kb on + strand, within IAI47_04410at 924.510 kb on + strand, within IAI47_04410at 924.510 kb on + strand, within IAI47_04410at 924.510 kb on + strand, within IAI47_04410at 924.510 kb on + strand, within IAI47_04410at 924.510 kb on + strand, within IAI47_04410at 924.510 kb on + strand, within IAI47_04410at 924.511 kb on - strand, within IAI47_04410at 924.511 kb on - strand, within IAI47_04410at 924.511 kb on - strand, within IAI47_04410at 924.511 kb on - strand, within IAI47_04410at 924.511 kb on - strand, within IAI47_04410at 924.511 kb on - strand, within IAI47_04410at 924.511 kb on - strand, within IAI47_04410at 924.552 kb on + strand, within IAI47_04410at 924.552 kb on + strand, within IAI47_04410at 924.552 kb on + strand, within IAI47_04410at 924.553 kb on - strand, within IAI47_04410at 924.553 kb on - strand, within IAI47_04410at 924.561 kb on + strand, within IAI47_04410at 924.562 kb on - strand, within IAI47_04410at 924.562 kb on - strand, within IAI47_04410at 924.563 kb on + strand, within IAI47_04410at 924.563 kb on + strand, within IAI47_04410at 924.564 kb on - strand, within IAI47_04410at 924.564 kb on - strand, within IAI47_04410at 924.591 kb on + strand, within IAI47_04410at 924.592 kb on - strand, within IAI47_04410at 924.594 kb on + strand, within IAI47_04410at 924.594 kb on + strand, within IAI47_04410at 924.594 kb on + strand, within IAI47_04410at 924.594 kb on + strand, within IAI47_04410at 924.595 kb on - strand, within IAI47_04410at 924.595 kb on - strand, within IAI47_04410at 924.595 kb on - strand, within IAI47_04410at 924.632 kb on + strand, within IAI47_04410at 924.632 kb on + strand, within IAI47_04410at 924.632 kb on + strand, within IAI47_04410at 924.632 kb on + strand, within IAI47_04410at 924.632 kb on + strand, within IAI47_04410at 924.633 kb on - strand, within IAI47_04410at 924.633 kb on - strand, within IAI47_04410at 924.633 kb on - strand, within IAI47_04410at 924.633 kb on - strand, within IAI47_04410at 924.633 kb on - strand, within IAI47_04410at 924.690 kb on + strand, within IAI47_04410at 924.690 kb on + strand, within IAI47_04410at 924.690 kb on + strand, within IAI47_04410at 924.690 kb on + strand, within IAI47_04410at 924.690 kb on + strand, within IAI47_04410at 924.690 kb on + strand, within IAI47_04410at 924.691 kb on - strand, within IAI47_04410at 924.694 kb on + strand, within IAI47_04410at 924.694 kb on + strand, within IAI47_04410at 924.694 kb on + strand, within IAI47_04410at 924.694 kb on + strand, within IAI47_04410at 924.694 kb on + strand, within IAI47_04410at 924.694 kb on + strand, within IAI47_04410at 924.694 kb on + strand, within IAI47_04410at 924.694 kb on + strand, within IAI47_04410at 924.694 kb on + strand, within IAI47_04410at 924.694 kb on + strand, within IAI47_04410at 924.694 kb on + strand, within IAI47_04410at 924.695 kb on - strand, within IAI47_04410at 924.695 kb on - strand, within IAI47_04410at 924.695 kb on - strand, within IAI47_04410at 924.695 kb on - strand, within IAI47_04410at 924.695 kb on - strand, within IAI47_04410at 924.695 kb on - strand, within IAI47_04410at 924.695 kb on - strand, within IAI47_04410at 924.695 kb on - strand, within IAI47_04410at 924.695 kb on - strand, within IAI47_04410at 924.695 kb on - strand, within IAI47_04410at 924.695 kb on - strand, within IAI47_04410at 924.695 kb on - strand, within IAI47_04410at 924.714 kb on + strand, within IAI47_04410at 924.714 kb on + strand, within IAI47_04410at 924.714 kb on + strand, within IAI47_04410at 924.714 kb on + strand, within IAI47_04410at 924.715 kb on - strand, within IAI47_04410at 924.715 kb on - strand, within IAI47_04410at 924.715 kb on - strand, within IAI47_04410at 924.715 kb on - strand, within IAI47_04410at 924.715 kb on - strand, within IAI47_04410at 924.743 kb on + strand, within IAI47_04410at 924.743 kb on + strand, within IAI47_04410at 924.743 kb on + strand, within IAI47_04410at 924.744 kb on - strand, within IAI47_04410at 924.744 kb on - strand, within IAI47_04410at 924.794 kb on + strand, within IAI47_04410at 924.884 kb on + strand, within IAI47_04410at 924.884 kb on + strand, within IAI47_04410at 924.884 kb on + strand, within IAI47_04410at 924.884 kb on + strand, within IAI47_04410at 924.884 kb on + strand, within IAI47_04410at 924.885 kb on - strand, within IAI47_04410at 924.885 kb on - strand, within IAI47_04410at 924.885 kb on - strand, within IAI47_04410at 925.037 kb on + strand, within IAI47_04410at 925.037 kb on + strand, within IAI47_04410at 925.037 kb on + strand, within IAI47_04410at 925.037 kb on + strand, within IAI47_04410at 925.037 kb on + strand, within IAI47_04410at 925.037 kb on + strand, within IAI47_04410at 925.037 kb on + strand, within IAI47_04410at 925.037 kb on + strand, within IAI47_04410at 925.038 kb on - strand, within IAI47_04410at 925.038 kb on - strand, within IAI47_04410at 925.038 kb on - strand, within IAI47_04410at 925.062 kb on + strand, within IAI47_04410at 925.069 kb on + strand, within IAI47_04410at 925.069 kb on + strand, within IAI47_04410at 925.069 kb on + strand, within IAI47_04410at 925.070 kb on - strand, within IAI47_04410at 925.070 kb on - strand, within IAI47_04410at 925.215 kb on + strandat 925.216 kb on - strandat 925.216 kb on - strandat 925.251 kb on + strandat 925.264 kb on + strandat 925.264 kb on + strandat 925.264 kb on + strandat 925.264 kb on + strandat 925.264 kb on + strandat 925.264 kb on + strandat 925.264 kb on + strandat 925.264 kb on + strandat 925.264 kb on + strandat 925.265 kb on - strandat 925.265 kb on - strandat 925.265 kb on - strandat 925.265 kb on - strandat 925.265 kb on - strandat 925.265 kb on - strandat 925.265 kb on - strandat 925.265 kb on - strandat 925.265 kb on - strandat 925.265 kb on - strandat 925.265 kb on - strandat 925.269 kb on + strandat 925.269 kb on + strandat 925.269 kb on + strandat 925.270 kb on - strandat 925.270 kb on - strandat 925.270 kb on - strandat 925.270 kb on - strandat 925.270 kb on - strandat 925.270 kb on - strandat 925.339 kb on + strandat 925.339 kb on + strandat 925.361 kb on + strandat 925.362 kb on - strandat 925.400 kb on + strandat 925.400 kb on + strandat 925.400 kb on + strandat 925.400 kb on + strandat 925.429 kb on + strandat 925.429 kb on + strandat 925.430 kb on - strandat 925.435 kb on + strandat 925.435 kb on + strandat 925.435 kb on + strandat 925.435 kb on + strandat 925.442 kb on + strandat 925.442 kb on + strandat 925.443 kb on - strandat 925.455 kb on + strandat 925.456 kb on - strandat 925.456 kb on - strandat 925.511 kb on - strandat 925.552 kb on + strand, within IAI47_04415at 925.552 kb on + strand, within IAI47_04415at 925.552 kb on + strand, within IAI47_04415at 925.553 kb on - strand, within IAI47_04415at 925.553 kb on - strand, within IAI47_04415at 925.553 kb on - strand, within IAI47_04415at 925.553 kb on - strand, within IAI47_04415at 925.553 kb on - strand, within IAI47_04415at 925.609 kb on + strand, within IAI47_04415at 925.611 kb on + strand, within IAI47_04415at 925.611 kb on + strand, within IAI47_04415at 925.611 kb on + strand, within IAI47_04415at 925.611 kb on + strand, within IAI47_04415at 925.611 kb on + strand, within IAI47_04415at 925.611 kb on + strand, within IAI47_04415at 925.611 kb on + strand, within IAI47_04415at 925.611 kb on + strand, within IAI47_04415at 925.612 kb on - strand, within IAI47_04415at 925.612 kb on - strand, within IAI47_04415at 925.612 kb on - strand, within IAI47_04415at 925.612 kb on - strand, within IAI47_04415at 925.612 kb on - strand, within IAI47_04415at 925.615 kb on + strand, within IAI47_04415at 925.615 kb on + strand, within IAI47_04415at 925.615 kb on + strand, within IAI47_04415at 925.615 kb on + strand, within IAI47_04415at 925.615 kb on + strand, within IAI47_04415at 925.616 kb on - strand, within IAI47_04415at 925.616 kb on - strandat 925.616 kb on - strand, within IAI47_04415at 925.616 kb on - strand, within IAI47_04415at 925.616 kb on - strand, within IAI47_04415at 925.660 kb on + strand, within IAI47_04415at 925.661 kb on - strand, within IAI47_04415at 925.663 kb on + strand, within IAI47_04415at 925.663 kb on + strand, within IAI47_04415at 925.663 kb on + strand, within IAI47_04415at 925.663 kb on + strand, within IAI47_04415at 925.663 kb on + strand, within IAI47_04415at 925.664 kb on - strand, within IAI47_04415at 925.708 kb on + strand, within IAI47_04415at 925.709 kb on - strand, within IAI47_04415at 925.717 kb on + strand, within IAI47_04415at 925.802 kb on - strandat 925.808 kb on - strandat 925.823 kb on + strandat 925.823 kb on + strandat 925.824 kb on - strandat 925.824 kb on - strandat 925.824 kb on - strandat 925.829 kb on + strandat 925.865 kb on + strandat 925.866 kb on - strandat 925.882 kb on - strandat 925.926 kb on + strandat 925.926 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrogen source nitrite 1mM
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924,496 + IAI47_04410 0.36 -3.3
924,496 + IAI47_04410 0.36 -0.8
924,497 - IAI47_04410 0.36 -2.5
924,497 - IAI47_04410 0.36 -2.8
924,497 - IAI47_04410 0.36 -1.5
924,497 - IAI47_04410 0.36 -1.6
924,497 - IAI47_04410 0.36 -3.7
924,497 - IAI47_04410 0.36 -2.2
924,497 - IAI47_04410 0.36 -1.9
924,497 - IAI47_04410 0.36 +1.3
924,510 + IAI47_04410 0.37 -1.2
924,510 + IAI47_04410 0.37 -3.2
924,510 + IAI47_04410 0.37 -2.6
924,510 + IAI47_04410 0.37 -4.3
924,510 + IAI47_04410 0.37 -0.1
924,510 + IAI47_04410 0.37 -2.9
924,510 + IAI47_04410 0.37 +0.5
924,510 + IAI47_04410 0.37 -3.9
924,510 + IAI47_04410 0.37 -2.5
924,510 + IAI47_04410 0.37 -2.1
924,511 - IAI47_04410 0.37 -1.1
924,511 - IAI47_04410 0.37 -2.4
924,511 - IAI47_04410 0.37 -2.9
924,511 - IAI47_04410 0.37 -3.1
924,511 - IAI47_04410 0.37 -3.5
924,511 - IAI47_04410 0.37 -2.8
924,511 - IAI47_04410 0.37 -1.9
924,552 + IAI47_04410 0.40 -2.0
924,552 + IAI47_04410 0.40 -0.6
924,552 + IAI47_04410 0.40 -2.6
924,553 - IAI47_04410 0.41 -2.0
924,553 - IAI47_04410 0.41 -0.0
924,561 + IAI47_04410 0.41 -1.8
924,562 - IAI47_04410 0.41 -0.9
924,562 - IAI47_04410 0.41 +0.3
924,563 + IAI47_04410 0.41 -3.3
924,563 + IAI47_04410 0.41 -3.1
924,564 - IAI47_04410 0.41 -1.6
924,564 - IAI47_04410 0.41 -3.1
924,591 + IAI47_04410 0.44 -0.6
924,592 - IAI47_04410 0.44 -3.2
924,594 + IAI47_04410 0.44 -3.5
924,594 + IAI47_04410 0.44 +0.4
924,594 + IAI47_04410 0.44 -0.2
924,594 + IAI47_04410 0.44 -3.4
924,595 - IAI47_04410 0.44 -2.3
924,595 - IAI47_04410 0.44 -3.7
924,595 - IAI47_04410 0.44 -0.1
924,632 + IAI47_04410 0.47 -1.3
924,632 + IAI47_04410 0.47 -3.3
924,632 + IAI47_04410 0.47 -1.0
924,632 + IAI47_04410 0.47 -2.9
924,632 + IAI47_04410 0.47 -1.3
924,633 - IAI47_04410 0.47 -2.8
924,633 - IAI47_04410 0.47 -2.7
924,633 - IAI47_04410 0.47 -2.2
924,633 - IAI47_04410 0.47 -2.8
924,633 - IAI47_04410 0.47 -0.8
924,690 + IAI47_04410 0.52 -3.1
924,690 + IAI47_04410 0.52 -3.2
924,690 + IAI47_04410 0.52 -2.3
924,690 + IAI47_04410 0.52 -1.6
924,690 + IAI47_04410 0.52 -2.7
924,690 + IAI47_04410 0.52 -2.0
924,691 - IAI47_04410 0.52 -0.9
924,694 + IAI47_04410 0.53 -2.9
924,694 + IAI47_04410 0.53 -2.4
924,694 + IAI47_04410 0.53 -2.5
924,694 + IAI47_04410 0.53 -2.3
924,694 + IAI47_04410 0.53 -2.5
924,694 + IAI47_04410 0.53 -4.0
924,694 + IAI47_04410 0.53 -3.2
924,694 + IAI47_04410 0.53 -2.3
924,694 + IAI47_04410 0.53 -0.6
924,694 + IAI47_04410 0.53 -0.8
924,694 + IAI47_04410 0.53 -2.6
924,695 - IAI47_04410 0.53 -1.5
924,695 - IAI47_04410 0.53 -3.2
924,695 - IAI47_04410 0.53 -2.1
924,695 - IAI47_04410 0.53 -1.6
924,695 - IAI47_04410 0.53 -3.1
924,695 - IAI47_04410 0.53 -1.1
924,695 - IAI47_04410 0.53 -2.3
924,695 - IAI47_04410 0.53 -3.2
924,695 - IAI47_04410 0.53 -2.1
924,695 - IAI47_04410 0.53 -0.8
924,695 - IAI47_04410 0.53 -3.6
924,695 - IAI47_04410 0.53 -1.8
924,714 + IAI47_04410 0.54 -1.8
924,714 + IAI47_04410 0.54 -0.8
924,714 + IAI47_04410 0.54 -2.1
924,714 + IAI47_04410 0.54 -2.4
924,715 - IAI47_04410 0.54 -1.8
924,715 - IAI47_04410 0.54 -3.1
924,715 - IAI47_04410 0.54 -3.4
924,715 - IAI47_04410 0.54 -0.3
924,715 - IAI47_04410 0.54 -2.4
924,743 + IAI47_04410 0.57 -1.4
924,743 + IAI47_04410 0.57 -0.6
924,743 + IAI47_04410 0.57 +1.4
924,744 - IAI47_04410 0.57 -1.7
924,744 - IAI47_04410 0.57 -2.4
924,794 + IAI47_04410 0.61 -1.4
924,884 + IAI47_04410 0.69 -1.6
924,884 + IAI47_04410 0.69 -1.3
924,884 + IAI47_04410 0.69 -1.3
924,884 + IAI47_04410 0.69 -2.6
924,884 + IAI47_04410 0.69 -1.8
924,885 - IAI47_04410 0.69 -0.9
924,885 - IAI47_04410 0.69 -1.1
924,885 - IAI47_04410 0.69 -0.6
925,037 + IAI47_04410 0.82 -1.8
925,037 + IAI47_04410 0.82 -2.5
925,037 + IAI47_04410 0.82 -1.3
925,037 + IAI47_04410 0.82 -2.3
925,037 + IAI47_04410 0.82 -1.1
925,037 + IAI47_04410 0.82 -2.6
925,037 + IAI47_04410 0.82 -1.7
925,037 + IAI47_04410 0.82 -3.2
925,038 - IAI47_04410 0.82 -2.0
925,038 - IAI47_04410 0.82 -2.5
925,038 - IAI47_04410 0.82 -0.2
925,062 + IAI47_04410 0.84 -0.9
925,069 + IAI47_04410 0.84 +0.1
925,069 + IAI47_04410 0.84 -1.8
925,069 + IAI47_04410 0.84 -0.7
925,070 - IAI47_04410 0.85 -3.9
925,070 - IAI47_04410 0.85 -4.3
925,215 + -1.3
925,216 - -2.8
925,216 - -2.7
925,251 + -0.6
925,264 + -2.8
925,264 + -1.5
925,264 + -3.1
925,264 + -0.3
925,264 + -0.0
925,264 + -2.3
925,264 + -3.1
925,264 + -0.3
925,264 + +1.1
925,265 - -2.2
925,265 - -1.3
925,265 - -0.9
925,265 - -2.7
925,265 - -2.1
925,265 - -0.9
925,265 - -0.6
925,265 - -0.1
925,265 - -1.4
925,265 - -2.6
925,265 - -0.6
925,269 + -1.5
925,269 + -1.4
925,269 + -4.2
925,270 - -3.0
925,270 - -2.0
925,270 - -0.9
925,270 - -2.2
925,270 - -1.4
925,270 - +0.1
925,339 + -2.0
925,339 + -2.6
925,361 + -1.1
925,362 - +0.4
925,400 + -2.3
925,400 + -2.4
925,400 + -3.1
925,400 + -2.1
925,429 + -1.4
925,429 + -1.9
925,430 - +1.3
925,435 + -1.8
925,435 + -1.8
925,435 + -2.4
925,435 + +0.2
925,442 + -1.9
925,442 + -0.6
925,443 - +1.0
925,455 + +0.4
925,456 - +0.7
925,456 - -1.0
925,511 - -1.0
925,552 + IAI47_04415 0.19 +1.2
925,552 + IAI47_04415 0.19 +0.9
925,552 + IAI47_04415 0.19 -0.0
925,553 - IAI47_04415 0.20 +0.3
925,553 - IAI47_04415 0.20 +1.6
925,553 - IAI47_04415 0.20 -1.3
925,553 - IAI47_04415 0.20 -1.0
925,553 - IAI47_04415 0.20 -1.7
925,609 + IAI47_04415 0.36 +0.3
925,611 + IAI47_04415 0.37 +1.6
925,611 + IAI47_04415 0.37 +0.2
925,611 + IAI47_04415 0.37 +0.4
925,611 + IAI47_04415 0.37 +0.7
925,611 + IAI47_04415 0.37 +1.0
925,611 + IAI47_04415 0.37 +0.4
925,611 + IAI47_04415 0.37 +1.5
925,611 + IAI47_04415 0.37 +0.6
925,612 - IAI47_04415 0.37 +0.4
925,612 - IAI47_04415 0.37 +0.2
925,612 - IAI47_04415 0.37 -1.1
925,612 - IAI47_04415 0.37 +1.8
925,612 - IAI47_04415 0.37 +0.3
925,615 + IAI47_04415 0.38 +0.8
925,615 + IAI47_04415 0.38 +0.6
925,615 + IAI47_04415 0.38 +0.8
925,615 + IAI47_04415 0.38 +0.4
925,615 + IAI47_04415 0.38 +2.1
925,616 - IAI47_04415 0.38 +0.1
925,616 - -1.3
925,616 - IAI47_04415 0.38 +1.8
925,616 - IAI47_04415 0.38 +0.6
925,616 - IAI47_04415 0.38 +1.4
925,660 + IAI47_04415 0.51 +1.6
925,661 - IAI47_04415 0.52 -0.0
925,663 + IAI47_04415 0.52 +0.3
925,663 + IAI47_04415 0.52 +1.3
925,663 + IAI47_04415 0.52 +1.5
925,663 + IAI47_04415 0.52 +1.9
925,663 + IAI47_04415 0.52 +0.7
925,664 - IAI47_04415 0.53 +1.1
925,708 + IAI47_04415 0.66 +0.9
925,709 - IAI47_04415 0.66 +1.6
925,717 + IAI47_04415 0.68 +1.5
925,802 - +0.2
925,808 - +0.3
925,823 + +2.6
925,823 + -1.9
925,824 - -0.9
925,824 - -1.8
925,824 - -0.4
925,829 + +0.9
925,865 + +0.4
925,866 - +0.1
925,882 - +0.2
925,926 + -0.2
925,926 + -1.2

Or see this region's nucleotide sequence