Experiment: nitrogen source nitrite 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03550 and IAI47_03555 are separated by 54 nucleotides IAI47_03555 and IAI47_03560 overlap by 1 nucleotides
IAI47_03550: IAI47_03550 - membrane-bound lytic murein transglycosylase MltC, at 742,753 to 743,832
_03550
IAI47_03555: IAI47_03555 - oxidative damage protection protein, at 743,887 to 744,159
_03555
IAI47_03560: IAI47_03560 - A/G-specific adenine glycosylase, at 744,159 to 745,244
_03560
Position (kb) 743
744
745 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 742.937 kb on + strand, within IAI47_03550 at 742.991 kb on + strand, within IAI47_03550 at 743.015 kb on + strand, within IAI47_03550 at 743.015 kb on + strand, within IAI47_03550 at 743.016 kb on - strand, within IAI47_03550 at 743.016 kb on - strand, within IAI47_03550 at 743.057 kb on + strand, within IAI47_03550 at 743.082 kb on + strand, within IAI47_03550 at 743.083 kb on - strand, within IAI47_03550 at 743.083 kb on - strand, within IAI47_03550 at 743.083 kb on - strand, within IAI47_03550 at 743.083 kb on - strand, within IAI47_03550 at 743.194 kb on - strand, within IAI47_03550 at 743.225 kb on + strand, within IAI47_03550 at 743.226 kb on - strand, within IAI47_03550 at 743.226 kb on - strand, within IAI47_03550 at 743.226 kb on - strand, within IAI47_03550 at 743.226 kb on - strand, within IAI47_03550 at 743.242 kb on - strand, within IAI47_03550 at 743.259 kb on - strand, within IAI47_03550 at 743.313 kb on - strand, within IAI47_03550 at 743.313 kb on - strand, within IAI47_03550 at 743.349 kb on + strand, within IAI47_03550 at 743.349 kb on + strand, within IAI47_03550 at 743.350 kb on - strand, within IAI47_03550 at 743.350 kb on - strand, within IAI47_03550 at 743.350 kb on - strand, within IAI47_03550 at 743.350 kb on - strand, within IAI47_03550 at 743.350 kb on - strand, within IAI47_03550 at 743.363 kb on + strand, within IAI47_03550 at 743.363 kb on + strand, within IAI47_03550 at 743.363 kb on + strand, within IAI47_03550 at 743.363 kb on + strand, within IAI47_03550 at 743.363 kb on + strand, within IAI47_03550 at 743.363 kb on + strand, within IAI47_03550 at 743.364 kb on - strand, within IAI47_03550 at 743.432 kb on + strand, within IAI47_03550 at 743.432 kb on + strand, within IAI47_03550 at 743.433 kb on - strand, within IAI47_03550 at 743.433 kb on - strand, within IAI47_03550 at 743.433 kb on - strand, within IAI47_03550 at 743.448 kb on + strand, within IAI47_03550 at 743.477 kb on + strand, within IAI47_03550 at 743.477 kb on + strand, within IAI47_03550 at 743.478 kb on - strand, within IAI47_03550 at 743.584 kb on - strand, within IAI47_03550 at 743.584 kb on - strand, within IAI47_03550 at 743.615 kb on + strand, within IAI47_03550 at 743.615 kb on + strand, within IAI47_03550 at 743.616 kb on - strand, within IAI47_03550 at 743.616 kb on - strand, within IAI47_03550 at 743.618 kb on + strand, within IAI47_03550 at 743.618 kb on + strand, within IAI47_03550 at 743.618 kb on + strand, within IAI47_03550 at 743.618 kb on + strand, within IAI47_03550 at 743.618 kb on + strand, within IAI47_03550 at 743.618 kb on + strand, within IAI47_03550 at 743.618 kb on + strand, within IAI47_03550 at 743.618 kb on + strand, within IAI47_03550 at 743.618 kb on + strand, within IAI47_03550 at 743.618 kb on + strand, within IAI47_03550 at 743.619 kb on - strand, within IAI47_03550 at 743.619 kb on - strand, within IAI47_03550 at 743.619 kb on - strand, within IAI47_03550 at 743.630 kb on + strand, within IAI47_03550 at 743.630 kb on + strand, within IAI47_03550 at 743.639 kb on + strand, within IAI47_03550 at 743.683 kb on - strand, within IAI47_03550 at 743.692 kb on - strand, within IAI47_03550 at 743.692 kb on - strand, within IAI47_03550 at 743.694 kb on + strand, within IAI47_03550 at 743.694 kb on + strand, within IAI47_03550 at 743.694 kb on + strand, within IAI47_03550 at 743.695 kb on - strand, within IAI47_03550 at 743.695 kb on - strand, within IAI47_03550 at 743.695 kb on - strand, within IAI47_03550 at 743.695 kb on - strand, within IAI47_03550 at 743.740 kb on + strand at 743.800 kb on + strand at 743.800 kb on + strand at 743.801 kb on - strand at 743.801 kb on - strand at 743.801 kb on - strand at 743.801 kb on - strand at 743.889 kb on - strand at 743.889 kb on - strand at 743.904 kb on + strand at 743.904 kb on + strand at 743.904 kb on + strand at 743.904 kb on + strand at 743.904 kb on + strand at 743.904 kb on + strand at 743.904 kb on + strand at 743.904 kb on + strand at 743.904 kb on + strand at 743.905 kb on - strand at 743.905 kb on - strand at 743.905 kb on - strand at 743.905 kb on - strand at 743.905 kb on - strand at 743.905 kb on - strand at 743.905 kb on - strand at 743.905 kb on - strand at 743.905 kb on - strand at 743.905 kb on - strand at 743.906 kb on + strand at 743.907 kb on - strand at 743.907 kb on - strand at 743.907 kb on - strand at 743.916 kb on + strand, within IAI47_03555 at 743.916 kb on + strand, within IAI47_03555 at 743.917 kb on - strand, within IAI47_03555 at 743.917 kb on - strand, within IAI47_03555 at 743.917 kb on - strand, within IAI47_03555 at 743.928 kb on + strand, within IAI47_03555 at 743.928 kb on + strand, within IAI47_03555 at 743.928 kb on + strand, within IAI47_03555 at 743.928 kb on + strand, within IAI47_03555 at 743.928 kb on + strand, within IAI47_03555 at 743.929 kb on - strand, within IAI47_03555 at 743.929 kb on - strand, within IAI47_03555 at 743.929 kb on - strand, within IAI47_03555 at 743.929 kb on - strand, within IAI47_03555 at 743.970 kb on + strand, within IAI47_03555 at 743.970 kb on + strand, within IAI47_03555 at 743.970 kb on + strand, within IAI47_03555 at 743.970 kb on + strand, within IAI47_03555 at 743.971 kb on - strand, within IAI47_03555 at 743.971 kb on - strand, within IAI47_03555 at 743.971 kb on - strand, within IAI47_03555 at 744.059 kb on - strand, within IAI47_03555 at 744.068 kb on + strand, within IAI47_03555 at 744.068 kb on + strand, within IAI47_03555 at 744.068 kb on + strand, within IAI47_03555 at 744.068 kb on + strand, within IAI47_03555 at 744.069 kb on - strand, within IAI47_03555 at 744.069 kb on - strand, within IAI47_03555 at 744.069 kb on - strand, within IAI47_03555 at 744.072 kb on + strand, within IAI47_03555 at 744.072 kb on + strand, within IAI47_03555 at 744.073 kb on - strand, within IAI47_03555 at 744.073 kb on - strand, within IAI47_03555 at 744.073 kb on - strand, within IAI47_03555 at 744.078 kb on + strand, within IAI47_03555 at 744.160 kb on + strand at 744.160 kb on + strand at 744.160 kb on + strand at 744.160 kb on + strand at 744.161 kb on - strand at 744.173 kb on + strand at 744.174 kb on - strand at 744.222 kb on + strand at 744.222 kb on + strand at 744.223 kb on - strand at 744.223 kb on - strand at 744.247 kb on - strand at 744.247 kb on - strand at 744.270 kb on + strand, within IAI47_03560 at 744.271 kb on - strand, within IAI47_03560 at 744.276 kb on - strand, within IAI47_03560 at 744.276 kb on - strand, within IAI47_03560 at 744.277 kb on + strand, within IAI47_03560 at 744.278 kb on - strand, within IAI47_03560 at 744.278 kb on - strand, within IAI47_03560 at 744.278 kb on - strand, within IAI47_03560 at 744.363 kb on + strand, within IAI47_03560 at 744.569 kb on + strand, within IAI47_03560 at 744.569 kb on + strand, within IAI47_03560 at 744.570 kb on - strand, within IAI47_03560 at 744.570 kb on - strand, within IAI47_03560 at 744.586 kb on + strand, within IAI47_03560 at 744.610 kb on + strand, within IAI47_03560 at 744.611 kb on - strand, within IAI47_03560 at 744.611 kb on - strand, within IAI47_03560 at 744.629 kb on + strand, within IAI47_03560 at 744.630 kb on - strand, within IAI47_03560 at 744.630 kb on - strand, within IAI47_03560 at 744.630 kb on - strand, within IAI47_03560 at 744.630 kb on - strand, within IAI47_03560 at 744.701 kb on + strand, within IAI47_03560 at 744.702 kb on - strand, within IAI47_03560 at 744.797 kb on - strand, within IAI47_03560 at 744.923 kb on + strand, within IAI47_03560 at 744.924 kb on - strand, within IAI47_03560 at 744.972 kb on - strand, within IAI47_03560 at 744.972 kb on - strand, within IAI47_03560 at 744.972 kb on - strand, within IAI47_03560 at 744.972 kb on - strand, within IAI47_03560 at 744.981 kb on - strand, within IAI47_03560 at 744.981 kb on - strand, within IAI47_03560 at 744.994 kb on + strand, within IAI47_03560 at 744.994 kb on + strand, within IAI47_03560 at 744.995 kb on - strand, within IAI47_03560 at 744.995 kb on - strand, within IAI47_03560 at 744.995 kb on - strand, within IAI47_03560 at 744.995 kb on - strand, within IAI47_03560 at 744.997 kb on - strand, within IAI47_03560 at 744.998 kb on - strand, within IAI47_03560 at 745.076 kb on + strand, within IAI47_03560 at 745.077 kb on - strand, within IAI47_03560 at 745.077 kb on - strand, within IAI47_03560 at 745.090 kb on + strand, within IAI47_03560 at 745.090 kb on + strand, within IAI47_03560 at 745.098 kb on + strand, within IAI47_03560 at 745.098 kb on + strand, within IAI47_03560 at 745.122 kb on + strand, within IAI47_03560 at 745.122 kb on + strand, within IAI47_03560 at 745.122 kb on + strand, within IAI47_03560 at 745.122 kb on + strand, within IAI47_03560 at 745.123 kb on - strand, within IAI47_03560 at 745.123 kb on - strand, within IAI47_03560 at 745.148 kb on + strand at 745.148 kb on + strand at 745.148 kb on + strand at 745.148 kb on + strand at 745.148 kb on + strand at 745.148 kb on + strand at 745.148 kb on + strand at 745.148 kb on + strand at 745.148 kb on + strand at 745.149 kb on - strand at 745.149 kb on - strand at 745.149 kb on - strand at 745.149 kb on - strand at 745.149 kb on - strand at 745.149 kb on - strand at 745.149 kb on - strand at 745.149 kb on - strand at 745.149 kb on - strand at 745.149 kb on - strand at 745.149 kb on - strand at 745.150 kb on + strand at 745.150 kb on + strand at 745.150 kb on + strand at 745.150 kb on + strand at 745.150 kb on + strand at 745.150 kb on + strand at 745.151 kb on - strand at 745.151 kb on - strand at 745.151 kb on - strand at 745.151 kb on - strand at 745.151 kb on - strand at 745.151 kb on - strand at 745.151 kb on - strand at 745.151 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrogen source nitrite 1mM remove 742,937 + IAI47_03550 0.17 +1.0 742,991 + IAI47_03550 0.22 +1.1 743,015 + IAI47_03550 0.24 +0.7 743,015 + IAI47_03550 0.24 +1.5 743,016 - IAI47_03550 0.24 +1.9 743,016 - IAI47_03550 0.24 +1.4 743,057 + IAI47_03550 0.28 +2.9 743,082 + IAI47_03550 0.30 +1.5 743,083 - IAI47_03550 0.31 +0.3 743,083 - IAI47_03550 0.31 +2.0 743,083 - IAI47_03550 0.31 +1.2 743,083 - IAI47_03550 0.31 +1.5 743,194 - IAI47_03550 0.41 +2.0 743,225 + IAI47_03550 0.44 +1.9 743,226 - IAI47_03550 0.44 +1.2 743,226 - IAI47_03550 0.44 -0.5 743,226 - IAI47_03550 0.44 +2.3 743,226 - IAI47_03550 0.44 +2.6 743,242 - IAI47_03550 0.45 +2.0 743,259 - IAI47_03550 0.47 +1.3 743,313 - IAI47_03550 0.52 +1.1 743,313 - IAI47_03550 0.52 +0.5 743,349 + IAI47_03550 0.55 +2.2 743,349 + IAI47_03550 0.55 +0.8 743,350 - IAI47_03550 0.55 +0.9 743,350 - IAI47_03550 0.55 +1.9 743,350 - IAI47_03550 0.55 +1.4 743,350 - IAI47_03550 0.55 +0.1 743,350 - IAI47_03550 0.55 +1.3 743,363 + IAI47_03550 0.56 +2.2 743,363 + IAI47_03550 0.56 +3.4 743,363 + IAI47_03550 0.56 +2.2 743,363 + IAI47_03550 0.56 +0.6 743,363 + IAI47_03550 0.56 +1.3 743,363 + IAI47_03550 0.56 -1.3 743,364 - IAI47_03550 0.57 +0.5 743,432 + IAI47_03550 0.63 +1.8 743,432 + IAI47_03550 0.63 +1.7 743,433 - IAI47_03550 0.63 +1.5 743,433 - IAI47_03550 0.63 +2.7 743,433 - IAI47_03550 0.63 +1.4 743,448 + IAI47_03550 0.64 +1.7 743,477 + IAI47_03550 0.67 +1.6 743,477 + IAI47_03550 0.67 +1.4 743,478 - IAI47_03550 0.67 +1.5 743,584 - IAI47_03550 0.77 -0.1 743,584 - IAI47_03550 0.77 +1.1 743,615 + IAI47_03550 0.80 +2.1 743,615 + IAI47_03550 0.80 +1.2 743,616 - IAI47_03550 0.80 +0.3 743,616 - IAI47_03550 0.80 +1.9 743,618 + IAI47_03550 0.80 +1.3 743,618 + IAI47_03550 0.80 +1.4 743,618 + IAI47_03550 0.80 +1.5 743,618 + IAI47_03550 0.80 +1.9 743,618 + IAI47_03550 0.80 +2.1 743,618 + IAI47_03550 0.80 +1.3 743,618 + IAI47_03550 0.80 +1.9 743,618 + IAI47_03550 0.80 +1.4 743,618 + IAI47_03550 0.80 +1.7 743,618 + IAI47_03550 0.80 +0.6 743,619 - IAI47_03550 0.80 +3.6 743,619 - IAI47_03550 0.80 +0.1 743,619 - IAI47_03550 0.80 +0.8 743,630 + IAI47_03550 0.81 +1.9 743,630 + IAI47_03550 0.81 +0.8 743,639 + IAI47_03550 0.82 +2.6 743,683 - IAI47_03550 0.86 +2.1 743,692 - IAI47_03550 0.87 +2.0 743,692 - IAI47_03550 0.87 -0.2 743,694 + IAI47_03550 0.87 +1.3 743,694 + IAI47_03550 0.87 +2.2 743,694 + IAI47_03550 0.87 +3.0 743,695 - IAI47_03550 0.87 +2.9 743,695 - IAI47_03550 0.87 +1.3 743,695 - IAI47_03550 0.87 +0.0 743,695 - IAI47_03550 0.87 +1.2 743,740 + +1.6 743,800 + +1.8 743,800 + +1.4 743,801 - +1.3 743,801 - +1.6 743,801 - +1.9 743,801 - +0.9 743,889 - -0.5 743,889 - +1.2 743,904 + +2.0 743,904 + +1.4 743,904 + +1.5 743,904 + -0.7 743,904 + +2.8 743,904 + +1.6 743,904 + +1.4 743,904 + +0.7 743,904 + +0.0 743,905 - +1.5 743,905 - +0.9 743,905 - -2.6 743,905 - -2.4 743,905 - -0.8 743,905 - +2.0 743,905 - +1.0 743,905 - +0.3 743,905 - -0.7 743,905 - -1.0 743,906 + +2.2 743,907 - -1.1 743,907 - +0.9 743,907 - -0.3 743,916 + IAI47_03555 0.11 +3.0 743,916 + IAI47_03555 0.11 +1.2 743,917 - IAI47_03555 0.11 -0.6 743,917 - IAI47_03555 0.11 +1.1 743,917 - IAI47_03555 0.11 +0.1 743,928 + IAI47_03555 0.15 +0.7 743,928 + IAI47_03555 0.15 +1.3 743,928 + IAI47_03555 0.15 +0.5 743,928 + IAI47_03555 0.15 +0.7 743,928 + IAI47_03555 0.15 +2.5 743,929 - IAI47_03555 0.15 -0.1 743,929 - IAI47_03555 0.15 +1.1 743,929 - IAI47_03555 0.15 +0.3 743,929 - IAI47_03555 0.15 +0.6 743,970 + IAI47_03555 0.30 +1.6 743,970 + IAI47_03555 0.30 +1.8 743,970 + IAI47_03555 0.30 -1.6 743,970 + IAI47_03555 0.30 +2.5 743,971 - IAI47_03555 0.31 +0.4 743,971 - IAI47_03555 0.31 +1.9 743,971 - IAI47_03555 0.31 +0.4 744,059 - IAI47_03555 0.63 +1.0 744,068 + IAI47_03555 0.66 -1.3 744,068 + IAI47_03555 0.66 -0.0 744,068 + IAI47_03555 0.66 +1.4 744,068 + IAI47_03555 0.66 +0.9 744,069 - IAI47_03555 0.67 -0.9 744,069 - IAI47_03555 0.67 -0.7 744,069 - IAI47_03555 0.67 +1.1 744,072 + IAI47_03555 0.68 +2.1 744,072 + IAI47_03555 0.68 +1.7 744,073 - IAI47_03555 0.68 +0.3 744,073 - IAI47_03555 0.68 -2.2 744,073 - IAI47_03555 0.68 +0.4 744,078 + IAI47_03555 0.70 -0.1 744,160 + -0.5 744,160 + +1.2 744,160 + +1.1 744,160 + +0.7 744,161 - -0.5 744,173 + +0.6 744,174 - +0.8 744,222 + +0.7 744,222 + -1.6 744,223 - +0.4 744,223 - -0.7 744,247 - +0.2 744,247 - +0.3 744,270 + IAI47_03560 0.10 +2.3 744,271 - IAI47_03560 0.10 -0.4 744,276 - IAI47_03560 0.11 -0.8 744,276 - IAI47_03560 0.11 +0.6 744,277 + IAI47_03560 0.11 +0.8 744,278 - IAI47_03560 0.11 +1.2 744,278 - IAI47_03560 0.11 +1.0 744,278 - IAI47_03560 0.11 -0.7 744,363 + IAI47_03560 0.19 -1.2 744,569 + IAI47_03560 0.38 -0.1 744,569 + IAI47_03560 0.38 -0.6 744,570 - IAI47_03560 0.38 +0.2 744,570 - IAI47_03560 0.38 +0.0 744,586 + IAI47_03560 0.39 +1.7 744,610 + IAI47_03560 0.42 +0.9 744,611 - IAI47_03560 0.42 -1.3 744,611 - IAI47_03560 0.42 +0.6 744,629 + IAI47_03560 0.43 +0.5 744,630 - IAI47_03560 0.43 -2.2 744,630 - IAI47_03560 0.43 -2.8 744,630 - IAI47_03560 0.43 -0.2 744,630 - IAI47_03560 0.43 +0.3 744,701 + IAI47_03560 0.50 +1.4 744,702 - IAI47_03560 0.50 +0.2 744,797 - IAI47_03560 0.59 -0.1 744,923 + IAI47_03560 0.70 +0.4 744,924 - IAI47_03560 0.70 +1.5 744,972 - IAI47_03560 0.75 +1.2 744,972 - IAI47_03560 0.75 -1.6 744,972 - IAI47_03560 0.75 -1.0 744,972 - IAI47_03560 0.75 -0.2 744,981 - IAI47_03560 0.76 -0.3 744,981 - IAI47_03560 0.76 -0.3 744,994 + IAI47_03560 0.77 -0.9 744,994 + IAI47_03560 0.77 +0.1 744,995 - IAI47_03560 0.77 -0.6 744,995 - IAI47_03560 0.77 -2.2 744,995 - IAI47_03560 0.77 -0.7 744,995 - IAI47_03560 0.77 +1.0 744,997 - IAI47_03560 0.77 -0.9 744,998 - IAI47_03560 0.77 +0.9 745,076 + IAI47_03560 0.84 +0.6 745,077 - IAI47_03560 0.85 +0.2 745,077 - IAI47_03560 0.85 -0.2 745,090 + IAI47_03560 0.86 +0.6 745,090 + IAI47_03560 0.86 -1.9 745,098 + IAI47_03560 0.86 +0.5 745,098 + IAI47_03560 0.86 +0.8 745,122 + IAI47_03560 0.89 +0.5 745,122 + IAI47_03560 0.89 -0.5 745,122 + IAI47_03560 0.89 +0.4 745,122 + IAI47_03560 0.89 +1.3 745,123 - IAI47_03560 0.89 +0.1 745,123 - IAI47_03560 0.89 +1.3 745,148 + +1.0 745,148 + -0.5 745,148 + +1.8 745,148 + -2.3 745,148 + -0.3 745,148 + +1.8 745,148 + +1.0 745,148 + +0.1 745,148 + -0.4 745,149 - +1.9 745,149 - +0.9 745,149 - -0.5 745,149 - +3.3 745,149 - +0.2 745,149 - -0.1 745,149 - -0.7 745,149 - +0.7 745,149 - -0.3 745,149 - -1.5 745,149 - -1.3 745,150 + +0.5 745,150 + -0.7 745,150 + -2.2 745,150 + -0.0 745,150 + +1.0 745,150 + +0.6 745,151 - -0.1 745,151 - +0.4 745,151 - -1.9 745,151 - -2.1 745,151 - -1.0 745,151 - -0.7 745,151 - +1.0 745,151 - +0.6
Or see this region's nucleotide sequence