Strain Fitness in Pantoea sp. MT58 around IAI47_00535

Experiment: nitrogen source nitrite 1mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrogen source nitrite 1mM
121,084	+		IAI47_00530	0.14	+1.0
121,084	+		IAI47_00530	0.14	+0.6
121,085	-		IAI47_00530	0.15	+1.9
121,090	+		IAI47_00530	0.15	-1.0
121,090	+		IAI47_00530	0.15	+0.7
121,090	+		IAI47_00530	0.15	-2.8
121,090	+		IAI47_00530	0.15	+0.8
121,090	+		IAI47_00530	0.15	-2.2
121,090	+		IAI47_00530	0.15	-0.7
121,091	-		IAI47_00530	0.16	+0.7
121,091	-		IAI47_00530	0.16	+1.2
121,091	-		IAI47_00530	0.16	+0.2
121,132	+		IAI47_00530	0.22	+2.4
121,132	+		IAI47_00530	0.22	+1.6
121,133	-		IAI47_00530	0.22	+2.1
121,133	-		IAI47_00530	0.22	-2.3
121,133	-		IAI47_00530	0.22	+0.9
121,134	+		IAI47_00530	0.22	+0.8
121,134	+		IAI47_00530	0.22	-1.2
121,134	+		IAI47_00530	0.22	+0.2
121,134	+		IAI47_00530	0.22	+0.2
121,134	+		IAI47_00530	0.22	+1.4
121,134	+		IAI47_00530	0.22	-1.7
121,134	+		IAI47_00530	0.22	-0.8
121,134	+		IAI47_00530	0.22	+0.4
121,134	+		IAI47_00530	0.22	+0.1
121,134	+		IAI47_00530	0.22	+1.4
121,134	+		IAI47_00530	0.22	+1.0
121,134	+		IAI47_00530	0.22	+0.3
121,134	+		IAI47_00530	0.22	+0.2
121,134	+		IAI47_00530	0.22	+1.0
121,135	-		IAI47_00530	0.23	+0.2
121,135	-		IAI47_00530	0.23	-0.0
121,135	-		IAI47_00530	0.23	+0.5
121,135	-		IAI47_00530	0.23	-0.3
121,135	-		IAI47_00530	0.23	+1.1
121,135	-		IAI47_00530	0.23	+0.8
121,135	-		IAI47_00530	0.23	+0.0
121,135	-		IAI47_00530	0.23	+0.5
121,135	-		IAI47_00530	0.23	+0.3
121,135	-		IAI47_00530	0.23	+1.2
121,135	-		IAI47_00530	0.23	+0.6
121,135	-		IAI47_00530	0.23	+1.2
121,135	-		IAI47_00530	0.23	+2.1
121,135	-		IAI47_00530	0.23	+0.3
121,167	+		IAI47_00530	0.28	+0.9
121,168	-		IAI47_00530	0.28	+0.3
121,201	+		IAI47_00530	0.33	+1.5
121,202	-		IAI47_00530	0.33	+0.3
121,220	+		IAI47_00530	0.36	-1.6
121,221	-		IAI47_00530	0.37	-1.9
121,221	-		IAI47_00530	0.37	+0.2
121,221	-		IAI47_00530	0.37	-0.1
121,221	-		IAI47_00530	0.37	+0.0
121,240	+		IAI47_00530	0.40	+0.5
121,240	+		IAI47_00530	0.40	-0.2
121,241	-		IAI47_00530	0.40	-2.9
121,241	-		IAI47_00530	0.40	+0.9
121,253	+		IAI47_00530	0.42	-0.3
121,264	+		IAI47_00530	0.44	-1.7
121,264	+		IAI47_00530	0.44	+1.0
121,264	+		IAI47_00530	0.44	+0.3
121,265	-		IAI47_00530	0.44	+1.1
121,306	+		IAI47_00530	0.50	+0.9
121,422	+		IAI47_00530	0.69	-0.5
121,422	+		IAI47_00530	0.69	+0.5
121,422	+		IAI47_00530	0.69	-0.8
121,422	+		IAI47_00530	0.69	+0.7
121,422	+		IAI47_00530	0.69	-0.6
121,423	-		IAI47_00530	0.69	+1.3
121,423	-		IAI47_00530	0.69	+0.1
121,423	-		IAI47_00530	0.69	-0.9
121,423	-		IAI47_00530	0.69	-0.7
121,423	-		IAI47_00530	0.69	-0.8
121,423	-		IAI47_00530	0.69	-0.0
121,423	-		IAI47_00530	0.69	-0.7
121,423	-		IAI47_00530	0.69	-0.2
121,423	-		IAI47_00530	0.69	+1.5
121,423	-		IAI47_00530	0.69	-0.2
121,510	+		IAI47_00530	0.83	+1.3
121,510	+		IAI47_00530	0.83	+1.0
121,510	+		IAI47_00530	0.83	-0.1
121,510	+		IAI47_00530	0.83	+0.2
121,510	+		IAI47_00530	0.83	-0.4
121,510	+		IAI47_00530	0.83	+2.5
121,511	-		IAI47_00530	0.83	+0.9
121,511	-		IAI47_00530	0.83	-0.1
121,511	-		IAI47_00530	0.83	-0.7
121,511	-		IAI47_00530	0.83	-0.5
121,513	+		IAI47_00530	0.84	-0.0
121,513	+		IAI47_00530	0.84	+0.5
121,513	+		IAI47_00530	0.84	+0.4
121,513	+		IAI47_00530	0.84	-0.7
121,513	+		IAI47_00530	0.84	-0.3
121,513	+		IAI47_00530	0.84	-0.7
121,514	-		IAI47_00530	0.84	+0.1
121,514	-		IAI47_00530	0.84	+0.6
121,579	+				+0.2
121,580	-				-0.2
121,580	-				+1.8
121,583	-				+1.3
121,588	+				+1.2
121,588	+				-0.9
121,589	-				+0.7
121,593	+				-0.3
121,593	+				-0.9
121,593	+				+1.5
121,594	-				-0.4
121,594	-				-0.7
121,608	-				+0.5
121,608	-				-0.1
121,608	-				+1.2
121,608	-				+0.5
121,608	-				+0.5
121,612	+				-1.5
121,613	-				+2.4
121,613	-				+1.0
121,613	-				+0.8
121,613	-				-0.7
121,626	-				+1.1
121,626	-				-0.4
121,642	+				+2.5
121,642	+				-1.2
121,642	+				-2.3
121,642	+				-0.4
121,643	-				+0.5
121,643	-				+1.0
121,643	-				+1.6
121,643	-				+2.9
121,654	+				+0.1
121,655	-				-1.3
121,655	-				+1.4
121,707	+				-0.8
121,707	+				+0.0
121,707	+				-0.8
121,707	+				-0.4
121,707	+				-1.5
121,707	+				-0.2
121,708	-				+0.9
121,708	-				-2.3
121,708	-				-0.9
121,708	-				+0.4
121,708	-				+0.9
121,708	-				-0.1
121,708	-				-0.0
121,708	-				-2.1
121,708	-				-2.0
121,708	-				-0.0
121,708	-				+0.0
121,709	+				-0.8
121,709	+				-0.7
121,710	-				+0.0
121,710	-				-2.7
121,733	+				+0.4
121,733	+				+0.9
121,733	+				-0.3
121,733	+				+0.4
121,734	-				-1.1
121,734	-				+1.6
121,734	-				-0.5
121,781	-				+0.5
121,826	+				-1.6
121,826	+				+0.2
121,853	+				+0.1
121,853	+				-0.9
121,853	+				+2.1
121,853	+				+1.6
121,853	+				+0.8
121,907	+				+1.3
121,908	-				+0.6
121,930	+				+1.4
121,931	-				+1.0
121,931	-				-0.2
121,948	+				+0.1
121,949	-				+1.4
121,950	+				+0.3
121,951	-				+1.1
121,963	-				+0.9
121,987	-				+2.4
122,031	-				-0.2
122,038	+				-0.9
122,038	+				+0.2
122,044	-				+0.4
122,047	-				+2.0
122,087	-				-1.7
122,095	-				+0.3
122,121	+		IAI47_00535	0.12	-1.3
122,121	+		IAI47_00535	0.12	+1.2
122,121	+		IAI47_00535	0.12	+1.2
122,122	-		IAI47_00535	0.12	-0.5
122,122	-		IAI47_00535	0.12	+0.1
122,122	-		IAI47_00535	0.12	-0.7
122,122	-		IAI47_00535	0.12	-0.8
122,122	-		IAI47_00535	0.12	-0.3
122,124	+		IAI47_00535	0.12	+0.8
122,125	-		IAI47_00535	0.12	+0.2
122,125	-		IAI47_00535	0.12	+1.0
122,130	+		IAI47_00535	0.13	-0.8
122,130	+		IAI47_00535	0.13	+1.4
122,130	+		IAI47_00535	0.13	-0.3
122,130	+		IAI47_00535	0.13	+0.3
122,180	+		IAI47_00535	0.21	+0.3
122,180	+		IAI47_00535	0.21	+1.0
122,181	-		IAI47_00535	0.21	-0.7
122,183	+		IAI47_00535	0.21	-0.3
122,184	-		IAI47_00535	0.22	+0.3
122,206	+		IAI47_00535	0.25	+0.6
122,207	-		IAI47_00535	0.25	+2.9
122,211	-		IAI47_00535	0.26	-0.1
122,234	+		IAI47_00535	0.29	-0.1
122,235	-		IAI47_00535	0.29	+0.5
122,266	+		IAI47_00535	0.34	+1.3
122,266	+		IAI47_00535	0.34	-0.4
122,266	+		IAI47_00535	0.34	+0.1
122,266	+		IAI47_00535	0.34	-0.2
122,267	-		IAI47_00535	0.34	+0.8
122,267	-		IAI47_00535	0.34	+0.4
122,267	-		IAI47_00535	0.34	+0.4
122,268	+		IAI47_00535	0.35	-0.3
122,269	-		IAI47_00535	0.35	+0.7
122,286	-		IAI47_00535	0.37	+0.6
122,288	+		IAI47_00535	0.38	-1.3
122,299	-		IAI47_00535	0.39	-0.3
122,299	-		IAI47_00535	0.39	-0.5
122,320	+		IAI47_00535	0.43	+0.3
122,321	-		IAI47_00535	0.43	-0.5
122,323	+		IAI47_00535	0.43	-1.4
122,323	+		IAI47_00535	0.43	+1.5
122,323	+		IAI47_00535	0.43	+0.9
122,324	-		IAI47_00535	0.43	+0.5
122,324	-		IAI47_00535	0.43	+0.7
122,437	+		IAI47_00535	0.61	-0.3
122,437	+		IAI47_00535	0.61	+1.6
122,437	+		IAI47_00535	0.61	+0.3
122,438	-		IAI47_00535	0.61	+0.9
122,438	-		IAI47_00535	0.61	-0.2
122,440	+		IAI47_00535	0.61	+0.4
122,448	+		IAI47_00535	0.62	+3.7
122,449	-		IAI47_00535	0.63	-2.8
122,467	+		IAI47_00535	0.65	+0.6
122,468	-		IAI47_00535	0.66	+1.0
122,479	+		IAI47_00535	0.67	-0.4
122,480	-		IAI47_00535	0.67	-1.7
122,480	-		IAI47_00535	0.67	+1.0
122,480	-		IAI47_00535	0.67	+1.5
122,480	-		IAI47_00535	0.67	-0.7
122,497	+		IAI47_00535	0.70	-1.9
122,497	+		IAI47_00535	0.70	-0.8
122,525	-		IAI47_00535	0.74	+1.0
122,525	-		IAI47_00535	0.74	+2.3
122,525	-		IAI47_00535	0.74	-1.0
122,525	-		IAI47_00535	0.74	-1.7
122,525	-		IAI47_00535	0.74	-0.3
122,537	+		IAI47_00535	0.76	-0.0
122,537	+		IAI47_00535	0.76	+2.1
122,537	+		IAI47_00535	0.76	+1.3
122,546	+		IAI47_00535	0.78	+1.2
122,547	-		IAI47_00535	0.78	+0.5
122,547	-		IAI47_00535	0.78	-0.4
122,548	+		IAI47_00535	0.78	-1.6
122,567	-		IAI47_00535	0.81	+0.8
122,662	+				+1.0
122,662	+				+0.8
122,665	+				-0.1
122,666	-				-2.5
122,666	-				-0.7
122,666	-				-0.5
122,681	+				-0.3
122,689	+				-0.1
122,692	+				-0.5
122,692	+				+0.5
122,693	-				-0.7
122,693	-				+0.3
122,693	-				+0.2
122,730	+				-2.9
122,770	-				+0.6
122,773	+				+0.5
122,805	-		IAI47_00540	0.12	-1.3
122,805	-		IAI47_00540	0.12	+2.6
122,826	+		IAI47_00540	0.20	-0.2
122,834	-		IAI47_00540	0.23	-1.0
122,867	+		IAI47_00540	0.36	+1.5
122,867	+		IAI47_00540	0.36	+0.3
123,061	-				+0.4
123,090	+				+1.7
123,091	-				-2.6
123,101	-				-0.1
123,104	+				+0.1
123,109	+				-1.1
123,163	+				+1.0
123,163	+				-0.8
123,163	+				-2.3
123,164	-				+0.5
123,176	+				+1.1
123,177	-				-0.2
123,180	-				+1.4
123,219	+				+0.9
123,219	+				+1.2
123,219	+				-0.9
123,220	-				-0.3
123,220	-				-0.4
123,224	+				-0.2
123,224	+				+2.1
123,225	-				-1.0
123,225	-				-1.5
123,225	-				+0.9
123,225	-				-0.4
123,225	-				+1.5
123,225	-				-0.3
123,225	-				+0.3
123,233	-				+1.5
123,233	-				+0.5
123,287	+				+0.1
123,287	+				-0.7
123,287	+				+0.7
123,288	-				+0.4
123,288	-				+0.8
123,288	-				-0.6
123,288	-				-0.3
123,302	+				+0.9
123,332	+				+1.8
123,332	+				+1.0
123,333	-				-1.9
123,333	-				+1.2
123,333	-				+0.2
123,333	-				+0.5
123,348	+				-1.0
123,348	+				+1.3
123,348	+				+0.3
123,349	-				-0.4
123,349	-				+0.5
123,357	-				+0.4
123,369	+				+1.3
123,370	-				+0.0
123,370	-				+0.5
123,370	-				+0.2
123,377	+				-0.1
123,378	-				+1.2
123,386	+				-0.4
123,386	+				+1.0
123,387	-				+0.3
123,387	-				+1.4
123,387	-				+0.5
123,387	-				-0.2
123,387	-				+1.1
123,387	-				+2.6
123,387	-				+1.0
123,393	+				+0.4
123,393	+				+0.6
123,394	-				-0.6
123,437	+				-0.6
123,437	+				-0.4
123,438	-				-1.2
123,438	-				+2.4
123,438	-				-2.3
123,441	+				+0.8
123,441	+				+0.9
123,441	+				-0.2
123,441	+				-0.5
123,441	+				+1.2
123,441	+				+1.1
123,442	-				+0.1
123,442	-				+1.2
123,442	-				+1.1
123,442	-				+0.3
123,442	-				+0.7
123,474	-				+0.3
123,513	+		IAI47_00545	0.10	+2.1
123,514	-		IAI47_00545	0.11	+0.8
123,535	-		IAI47_00545	0.16	-0.7
123,535	-		IAI47_00545	0.16	+2.5
123,535	-		IAI47_00545	0.16	+0.7
123,535	-		IAI47_00545	0.16	+0.1
123,535	-		IAI47_00545	0.16	-0.2
123,552	+		IAI47_00545	0.20	+0.1
123,553	-		IAI47_00545	0.20	-1.3
123,581	-		IAI47_00545	0.28	+0.7
123,623	+		IAI47_00545	0.38	+0.5
123,623	+		IAI47_00545	0.38	-1.1
123,623	+		IAI47_00545	0.38	-0.2
123,623	+		IAI47_00545	0.38	+1.1
123,623	+		IAI47_00545	0.38	-0.7
123,623	+		IAI47_00545	0.38	+0.8
123,623	+		IAI47_00545	0.38	-1.0
123,623	+		IAI47_00545	0.38	+0.2
123,623	+		IAI47_00545	0.38	-1.5
123,623	+		IAI47_00545	0.38	-1.2
123,623	+		IAI47_00545	0.38	-0.2
123,624	-		IAI47_00545	0.38	+2.0
123,624	-		IAI47_00545	0.38	+1.3
123,624	-		IAI47_00545	0.38	-1.5
123,624	-		IAI47_00545	0.38	-1.9
123,624	-		IAI47_00545	0.38	+0.1
123,624	-		IAI47_00545	0.38	+0.1
123,624	-		IAI47_00545	0.38	+1.1
123,624	-		IAI47_00545	0.38	+1.0
123,664	+		IAI47_00545	0.48	-3.4
123,664	+		IAI47_00545	0.48	-0.2
123,664	+		IAI47_00545	0.48	+1.3
123,664	+		IAI47_00545	0.48	+0.1
123,665	-		IAI47_00545	0.49	-1.0
123,680	+		IAI47_00545	0.53	-0.6
123,680	+		IAI47_00545	0.53	+1.5
123,680	+		IAI47_00545	0.53	+0.5
123,680	+		IAI47_00545	0.53	-0.6
123,680	+		IAI47_00545	0.53	+0.6
123,680	+		IAI47_00545	0.53	+0.2
123,680	+		IAI47_00545	0.53	+1.1
123,680	+		IAI47_00545	0.53	-0.7
123,680	+		IAI47_00545	0.53	-0.2
123,680	+		IAI47_00545	0.53	+1.9
123,680	+		IAI47_00545	0.53	+1.2
123,681	-		IAI47_00545	0.53	+0.0
123,681	-		IAI47_00545	0.53	-0.5
123,681	-		IAI47_00545	0.53	+0.9
123,681	-		IAI47_00545	0.53	+0.3
123,681	-		IAI47_00545	0.53	-0.3
123,681	-		IAI47_00545	0.53	-1.7
123,681	-		IAI47_00545	0.53	-1.6
123,681	-		IAI47_00545	0.53	-0.0