Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_2470

Experiment: methylglyoxal 0.005 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGa0059261_2468 and Ga0059261_2469 are separated by 4 nucleotidesGa0059261_2469 and Ga0059261_2470 are separated by 83 nucleotidesGa0059261_2470 and Ga0059261_2471 are separated by 147 nucleotidesGa0059261_2471 and Ga0059261_2472 are separated by 63 nucleotides Ga0059261_2468: Ga0059261_2468 - Enoyl-[acyl-carrier-protein] reductase [NADH] (EC 1.3.1.9), at 2,551,656 to 2,552,459 _2468 Ga0059261_2469: Ga0059261_2469 - Predicted acetyltransferase, at 2,552,464 to 2,552,991 _2469 Ga0059261_2470: Ga0059261_2470 - chorismate synthase (EC 4.2.3.5), at 2,553,075 to 2,554,145 _2470 Ga0059261_2471: Ga0059261_2471 - hypothetical protein, at 2,554,293 to 2,554,532 _2471 Ga0059261_2472: Ga0059261_2472 - Adenylosuccinate synthetase (EC 6.3.4.4), at 2,554,596 to 2,555,885 _2472 Position (kb) 2553 2554 2555Strain fitness (log2 ratio) -1 0 1at 2552.725 kb on + strand, within Ga0059261_2469at 2552.725 kb on + strand, within Ga0059261_2469at 2552.726 kb on - strand, within Ga0059261_2469at 2552.791 kb on + strand, within Ga0059261_2469at 2552.791 kb on + strand, within Ga0059261_2469at 2552.792 kb on - strand, within Ga0059261_2469at 2552.824 kb on + strand, within Ga0059261_2469at 2552.824 kb on + strand, within Ga0059261_2469at 2552.824 kb on + strand, within Ga0059261_2469at 2552.825 kb on - strand, within Ga0059261_2469at 2552.825 kb on - strand, within Ga0059261_2469at 2552.825 kb on - strand, within Ga0059261_2469at 2552.825 kb on - strand, within Ga0059261_2469at 2552.842 kb on + strand, within Ga0059261_2469at 2552.879 kb on - strand, within Ga0059261_2469at 2552.890 kb on + strand, within Ga0059261_2469at 2552.890 kb on + strand, within Ga0059261_2469at 2552.890 kb on + strand, within Ga0059261_2469at 2552.890 kb on + strand, within Ga0059261_2469at 2552.890 kb on + strand, within Ga0059261_2469at 2552.890 kb on + strand, within Ga0059261_2469at 2553.007 kb on + strandat 2553.007 kb on + strandat 2553.008 kb on - strandat 2554.277 kb on + strandat 2554.277 kb on + strandat 2554.278 kb on - strandat 2554.278 kb on - strandat 2554.278 kb on - strandat 2554.278 kb on - strandat 2554.278 kb on - strandat 2554.287 kb on + strandat 2554.287 kb on + strandat 2554.287 kb on + strandat 2554.287 kb on + strandat 2554.321 kb on + strand, within Ga0059261_2471at 2554.355 kb on + strand, within Ga0059261_2471at 2554.527 kb on + strandat 2554.527 kb on + strandat 2554.527 kb on + strandat 2554.527 kb on + strandat 2554.527 kb on + strandat 2554.527 kb on + strandat 2554.527 kb on + strandat 2554.527 kb on + strandat 2554.528 kb on - strandat 2554.528 kb on - strandat 2554.528 kb on - strandat 2554.528 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.005 vol%
remove
2,552,725 + Ga0059261_2469 0.49 +0.2
2,552,725 + Ga0059261_2469 0.49 -0.4
2,552,726 - Ga0059261_2469 0.50 +0.7
2,552,791 + Ga0059261_2469 0.62 +0.2
2,552,791 + Ga0059261_2469 0.62 +0.0
2,552,792 - Ga0059261_2469 0.62 -0.1
2,552,824 + Ga0059261_2469 0.68 -0.0
2,552,824 + Ga0059261_2469 0.68 -0.1
2,552,824 + Ga0059261_2469 0.68 +0.2
2,552,825 - Ga0059261_2469 0.68 +0.2
2,552,825 - Ga0059261_2469 0.68 -0.2
2,552,825 - Ga0059261_2469 0.68 +0.3
2,552,825 - Ga0059261_2469 0.68 +0.7
2,552,842 + Ga0059261_2469 0.72 -0.3
2,552,879 - Ga0059261_2469 0.79 +0.0
2,552,890 + Ga0059261_2469 0.81 +0.2
2,552,890 + Ga0059261_2469 0.81 -1.0
2,552,890 + Ga0059261_2469 0.81 +0.1
2,552,890 + Ga0059261_2469 0.81 -1.0
2,552,890 + Ga0059261_2469 0.81 +0.2
2,552,890 + Ga0059261_2469 0.81 +0.1
2,553,007 + -0.7
2,553,007 + +0.6
2,553,008 - -0.0
2,554,277 + -1.5
2,554,277 + -0.1
2,554,278 - +0.3
2,554,278 - +0.0
2,554,278 - -0.5
2,554,278 - +0.1
2,554,278 - -0.3
2,554,287 + -0.4
2,554,287 + +0.6
2,554,287 + +0.5
2,554,287 + +0.0
2,554,321 + Ga0059261_2471 0.12 -1.7
2,554,355 + Ga0059261_2471 0.26 +0.2
2,554,527 + +0.5
2,554,527 + -0.9
2,554,527 + +0.2
2,554,527 + +0.2
2,554,527 + -0.7
2,554,527 + +0.4
2,554,527 + -0.4
2,554,527 + +0.2
2,554,528 - +0.1
2,554,528 - -0.4
2,554,528 - -0.0
2,554,528 - +0.2

Or see this region's nucleotide sequence