Experiment: methylglyoxal 0.005 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0819 and Ga0059261_0820 are separated by 403 nucleotides Ga0059261_0820 and Ga0059261_0821 are separated by 214 nucleotides Ga0059261_0821 and Ga0059261_0822 are separated by 2 nucleotides
Ga0059261_0819: Ga0059261_0819 - Holliday junction DNA helicase subunit RuvB, at 861,188 to 862,216
_0819
Ga0059261_0820: Ga0059261_0820 - Holliday junction DNA helicase subunit RuvA, at 862,620 to 863,219
_0820
Ga0059261_0821: Ga0059261_0821 - hypothetical protein, at 863,434 to 863,886
_0821
Ga0059261_0822: Ga0059261_0822 - Holliday junction endonuclease RuvC (EC 3.1.22.4), at 863,889 to 864,374
_0822
Position (kb) 862
863
864 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 862.218 kb on + strand at 862.305 kb on - strand at 862.305 kb on - strand at 862.316 kb on + strand at 862.316 kb on + strand at 862.317 kb on - strand at 862.317 kb on - strand at 862.317 kb on - strand at 862.317 kb on - strand at 862.365 kb on + strand at 862.366 kb on - strand at 862.366 kb on - strand at 862.440 kb on + strand at 862.448 kb on + strand at 862.449 kb on - strand at 862.449 kb on - strand at 862.449 kb on - strand at 862.449 kb on - strand at 862.483 kb on - strand at 862.483 kb on - strand at 862.498 kb on - strand at 862.498 kb on - strand at 862.498 kb on - strand at 862.926 kb on + strand, within Ga0059261_0820 at 863.249 kb on - strand at 863.333 kb on - strand at 863.355 kb on + strand at 863.356 kb on - strand at 863.356 kb on - strand at 863.356 kb on - strand at 863.356 kb on - strand at 863.419 kb on - strand at 863.428 kb on + strand at 863.428 kb on + strand at 863.429 kb on - strand at 863.471 kb on + strand at 863.471 kb on + strand at 863.471 kb on + strand at 863.472 kb on - strand at 863.553 kb on + strand, within Ga0059261_0821 at 863.648 kb on + strand, within Ga0059261_0821 at 863.648 kb on + strand, within Ga0059261_0821 at 863.648 kb on + strand, within Ga0059261_0821 at 863.648 kb on + strand, within Ga0059261_0821 at 863.648 kb on + strand, within Ga0059261_0821 at 863.648 kb on + strand, within Ga0059261_0821 at 863.649 kb on - strand, within Ga0059261_0821 at 863.649 kb on - strand, within Ga0059261_0821 at 863.649 kb on - strand, within Ga0059261_0821 at 863.650 kb on + strand, within Ga0059261_0821 at 863.650 kb on + strand, within Ga0059261_0821 at 863.651 kb on - strand, within Ga0059261_0821 at 863.651 kb on - strand, within Ga0059261_0821 at 863.651 kb on - strand, within Ga0059261_0821 at 863.651 kb on - strand, within Ga0059261_0821 at 863.809 kb on - strand, within Ga0059261_0821 at 863.809 kb on - strand, within Ga0059261_0821 at 863.891 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.005 vol% remove 862,218 + -3.8 862,305 - -0.0 862,305 - +0.4 862,316 + -0.9 862,316 + -1.4 862,317 - -0.3 862,317 - -0.9 862,317 - -0.2 862,317 - +1.0 862,365 + +0.9 862,366 - +0.1 862,366 - -1.1 862,440 + -0.1 862,448 + -0.1 862,449 - +0.1 862,449 - +0.2 862,449 - +0.2 862,449 - -0.4 862,483 - -0.4 862,483 - -0.1 862,498 - -0.4 862,498 - +0.3 862,498 - -0.8 862,926 + Ga0059261_0820 0.51 -1.1 863,249 - +0.2 863,333 - -0.7 863,355 + -2.1 863,356 - +0.2 863,356 - -1.1 863,356 - +0.1 863,356 - -0.4 863,419 - -0.0 863,428 + +0.6 863,428 + +0.5 863,429 - +0.3 863,471 + +0.2 863,471 + -0.3 863,471 + -1.2 863,472 - +0.3 863,553 + Ga0059261_0821 0.26 -0.1 863,648 + Ga0059261_0821 0.47 -0.8 863,648 + Ga0059261_0821 0.47 +1.1 863,648 + Ga0059261_0821 0.47 -0.0 863,648 + Ga0059261_0821 0.47 -0.6 863,648 + Ga0059261_0821 0.47 -0.2 863,648 + Ga0059261_0821 0.47 +1.2 863,649 - Ga0059261_0821 0.47 +0.2 863,649 - Ga0059261_0821 0.47 +0.8 863,649 - Ga0059261_0821 0.47 -0.3 863,650 + Ga0059261_0821 0.48 -0.2 863,650 + Ga0059261_0821 0.48 -0.5 863,651 - Ga0059261_0821 0.48 +0.7 863,651 - Ga0059261_0821 0.48 +0.6 863,651 - Ga0059261_0821 0.48 +0.2 863,651 - Ga0059261_0821 0.48 -0.6 863,809 - Ga0059261_0821 0.83 +0.3 863,809 - Ga0059261_0821 0.83 +0.2 863,891 - +0.4
Or see this region's nucleotide sequence