Experiment: PYE with benzoic 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02821 and CCNA_02822 overlap by 4 nucleotides CCNA_02822 and CCNA_03978 are separated by 6 nucleotides CCNA_03978 and CCNA_03979 overlap by 127 nucleotides CCNA_03979 and CCNA_02823 are separated by 0 nucleotides CCNA_02823 and CCNA_02824 are separated by 184 nucleotides CCNA_02824 and CCNA_02825 are separated by 10 nucleotides
CCNA_02821: CCNA_02821 - hipA-related phosphatidylinositol 3/4-kinase, at 2,977,478 to 2,978,812
_02821
CCNA_02822: CCNA_02822 - MerR-family transcriptional regulator, at 2,978,809 to 2,979,663
_02822
CCNA_03978: CCNA_03978 - hypothetical protein, at 2,979,670 to 2,979,816
_03978
CCNA_03979: CCNA_03979 - hypothetical protein, at 2,979,690 to 2,979,911
_03979
CCNA_02823: CCNA_02823 - hypothetical protein, at 2,979,912 to 2,980,037
_02823
CCNA_02824: CCNA_02824 - hypothetical protein, at 2,980,222 to 2,980,575
_02824
CCNA_02825: CCNA_02825 - transposase, at 2,980,586 to 2,980,978
_02825
Position (kb)
2979
2980 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2978.675 kb on + strand, within CCNA_02821 at 2978.690 kb on + strand at 2978.708 kb on - strand at 2978.761 kb on - strand at 2978.767 kb on + strand at 2978.767 kb on + strand at 2978.775 kb on - strand at 2978.775 kb on - strand at 2978.775 kb on - strand at 2978.775 kb on - strand at 2978.775 kb on - strand at 2978.789 kb on + strand at 2978.810 kb on + strand at 2978.810 kb on + strand at 2978.810 kb on + strand at 2978.810 kb on + strand at 2978.818 kb on - strand at 2978.818 kb on - strand at 2978.818 kb on - strand at 2978.818 kb on - strand at 2979.581 kb on - strand at 2979.589 kb on - strand at 2979.589 kb on - strand at 2979.798 kb on + strand at 2979.811 kb on + strand at 2979.816 kb on + strand at 2979.816 kb on + strand at 2979.818 kb on + strand, within CCNA_03979 at 2979.824 kb on - strand, within CCNA_03979 at 2979.829 kb on - strand, within CCNA_03979 at 2979.854 kb on + strand, within CCNA_03979 at 2979.873 kb on + strand, within CCNA_03979 at 2979.881 kb on + strand, within CCNA_03979 at 2979.932 kb on - strand, within CCNA_02823 at 2979.941 kb on + strand, within CCNA_02823 at 2979.941 kb on + strand, within CCNA_02823 at 2979.947 kb on - strand, within CCNA_02823 at 2979.970 kb on + strand, within CCNA_02823 at 2979.970 kb on + strand, within CCNA_02823 at 2979.970 kb on + strand, within CCNA_02823 at 2979.978 kb on - strand, within CCNA_02823 at 2979.999 kb on - strand, within CCNA_02823 at 2980.069 kb on - strand at 2980.100 kb on + strand at 2980.108 kb on - strand at 2980.108 kb on - strand at 2980.108 kb on - strand at 2980.108 kb on - strand at 2980.108 kb on - strand at 2980.138 kb on - strand at 2980.153 kb on + strand at 2980.153 kb on + strand at 2980.153 kb on + strand at 2980.153 kb on + strand at 2980.156 kb on - strand at 2980.156 kb on - strand at 2980.161 kb on - strand at 2980.168 kb on + strand at 2980.173 kb on + strand at 2980.178 kb on + strand at 2980.179 kb on - strand at 2980.203 kb on - strand at 2980.219 kb on + strand at 2980.259 kb on + strand, within CCNA_02824 at 2980.267 kb on - strand, within CCNA_02824 at 2980.267 kb on - strand, within CCNA_02824 at 2980.267 kb on - strand, within CCNA_02824 at 2980.303 kb on - strand, within CCNA_02824 at 2980.341 kb on - strand, within CCNA_02824 at 2980.341 kb on - strand, within CCNA_02824 at 2980.341 kb on - strand, within CCNA_02824 at 2980.343 kb on + strand, within CCNA_02824 at 2980.343 kb on + strand, within CCNA_02824 at 2980.349 kb on - strand, within CCNA_02824 at 2980.351 kb on - strand, within CCNA_02824 at 2980.359 kb on - strand, within CCNA_02824 at 2980.370 kb on + strand, within CCNA_02824 at 2980.423 kb on - strand, within CCNA_02824 at 2980.437 kb on + strand, within CCNA_02824 at 2980.469 kb on + strand, within CCNA_02824 at 2980.472 kb on - strand, within CCNA_02824 at 2980.472 kb on - strand, within CCNA_02824 at 2980.493 kb on + strand, within CCNA_02824 at 2980.505 kb on + strand, within CCNA_02824 at 2980.506 kb on - strand, within CCNA_02824 at 2980.521 kb on - strand, within CCNA_02824 at 2980.539 kb on + strand, within CCNA_02824 at 2980.553 kb on + strand at 2980.556 kb on - strand at 2980.586 kb on + strand at 2980.594 kb on - strand at 2980.595 kb on + strand at 2980.595 kb on - strand at 2980.629 kb on + strand, within CCNA_02825 at 2980.659 kb on - strand, within CCNA_02825 at 2980.659 kb on - strand, within CCNA_02825 at 2980.666 kb on - strand, within CCNA_02825 at 2980.679 kb on - strand, within CCNA_02825 at 2980.702 kb on + strand, within CCNA_02825 at 2980.715 kb on + strand, within CCNA_02825 at 2980.727 kb on - strand, within CCNA_02825 at 2980.738 kb on - strand, within CCNA_02825 at 2980.753 kb on + strand, within CCNA_02825 at 2980.760 kb on - strand, within CCNA_02825 at 2980.785 kb on + strand, within CCNA_02825 at 2980.785 kb on + strand, within CCNA_02825 at 2980.793 kb on - strand, within CCNA_02825
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with benzoic 0.2 mg/ml remove 2,978,675 + CCNA_02821 0.90 -0.2 2,978,690 + +0.1 2,978,708 - +1.4 2,978,761 - +2.0 2,978,767 + +0.0 2,978,767 + +0.5 2,978,775 - +1.8 2,978,775 - +1.4 2,978,775 - +1.5 2,978,775 - +1.5 2,978,775 - +1.4 2,978,789 + -1.5 2,978,810 + -0.2 2,978,810 + +1.3 2,978,810 + -1.5 2,978,810 + -1.2 2,978,818 - +0.8 2,978,818 - +1.5 2,978,818 - +0.1 2,978,818 - +1.7 2,979,581 - +2.0 2,979,589 - +1.6 2,979,589 - +1.9 2,979,798 + +2.0 2,979,811 + +0.0 2,979,816 + +2.6 2,979,816 + -0.6 2,979,818 + CCNA_03979 0.58 -1.0 2,979,824 - CCNA_03979 0.60 +3.1 2,979,829 - CCNA_03979 0.63 +1.3 2,979,854 + CCNA_03979 0.74 +0.6 2,979,873 + CCNA_03979 0.82 +1.3 2,979,881 + CCNA_03979 0.86 +1.1 2,979,932 - CCNA_02823 0.16 +1.4 2,979,941 + CCNA_02823 0.23 -0.8 2,979,941 + CCNA_02823 0.23 -0.4 2,979,947 - CCNA_02823 0.28 +0.4 2,979,970 + CCNA_02823 0.46 -0.6 2,979,970 + CCNA_02823 0.46 -1.2 2,979,970 + CCNA_02823 0.46 +0.0 2,979,978 - CCNA_02823 0.52 +1.0 2,979,999 - CCNA_02823 0.69 -0.1 2,980,069 - -0.5 2,980,100 + +2.6 2,980,108 - -1.1 2,980,108 - +0.4 2,980,108 - +0.8 2,980,108 - +0.5 2,980,108 - +2.4 2,980,138 - +2.6 2,980,153 + -0.4 2,980,153 + -0.2 2,980,153 + +0.3 2,980,153 + -0.4 2,980,156 - -0.9 2,980,156 - -1.2 2,980,161 - +0.9 2,980,168 + -0.9 2,980,173 + +0.3 2,980,178 + +0.6 2,980,179 - +0.6 2,980,203 - +0.7 2,980,219 + -1.5 2,980,259 + CCNA_02824 0.10 +2.6 2,980,267 - CCNA_02824 0.13 +0.8 2,980,267 - CCNA_02824 0.13 -0.4 2,980,267 - CCNA_02824 0.13 -0.7 2,980,303 - CCNA_02824 0.23 +1.9 2,980,341 - CCNA_02824 0.34 -0.6 2,980,341 - CCNA_02824 0.34 +2.6 2,980,341 - CCNA_02824 0.34 +0.6 2,980,343 + CCNA_02824 0.34 +0.3 2,980,343 + CCNA_02824 0.34 +0.5 2,980,349 - CCNA_02824 0.36 +0.3 2,980,351 - CCNA_02824 0.36 -1.6 2,980,359 - CCNA_02824 0.39 +1.4 2,980,370 + CCNA_02824 0.42 +0.6 2,980,423 - CCNA_02824 0.57 +0.3 2,980,437 + CCNA_02824 0.61 +2.0 2,980,469 + CCNA_02824 0.70 +0.6 2,980,472 - CCNA_02824 0.71 -0.4 2,980,472 - CCNA_02824 0.71 -2.8 2,980,493 + CCNA_02824 0.77 +0.0 2,980,505 + CCNA_02824 0.80 -1.0 2,980,506 - CCNA_02824 0.80 +0.1 2,980,521 - CCNA_02824 0.84 +0.3 2,980,539 + CCNA_02824 0.90 -0.6 2,980,553 + +1.6 2,980,556 - +1.1 2,980,586 + +1.6 2,980,594 - +0.3 2,980,595 + -0.2 2,980,595 - +1.6 2,980,629 + CCNA_02825 0.11 +0.0 2,980,659 - CCNA_02825 0.19 +2.5 2,980,659 - CCNA_02825 0.19 +2.0 2,980,666 - CCNA_02825 0.20 -1.6 2,980,679 - CCNA_02825 0.24 -0.7 2,980,702 + CCNA_02825 0.30 +1.0 2,980,715 + CCNA_02825 0.33 -0.5 2,980,727 - CCNA_02825 0.36 +1.6 2,980,738 - CCNA_02825 0.39 +0.0 2,980,753 + CCNA_02825 0.42 +0.3 2,980,760 - CCNA_02825 0.44 +0.3 2,980,785 + CCNA_02825 0.51 +1.0 2,980,785 + CCNA_02825 0.51 -1.4 2,980,793 - CCNA_02825 0.53 +1.0
Or see this region's nucleotide sequence