Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03965

Experiment: PYE with benzoic 0.2 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_02253 and CCNA_03965 are separated by 55 nucleotidesCCNA_03965 and CCNA_02254 are separated by 108 nucleotides CCNA_02253: CCNA_02253 - hybrid CAP effector domain/patatin phospholipase protein, at 2,402,492 to 2,404,267 _02253 CCNA_03965: CCNA_03965 - hypothetical protein, at 2,404,323 to 2,404,409 _03965 CCNA_02254: CCNA_02254 - isovaleryl-CoA dehydrogenase, at 2,404,518 to 2,405,678 _02254 Position (kb) 2404 2405Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2403.398 kb on - strand, within CCNA_02253at 2403.398 kb on - strand, within CCNA_02253at 2403.448 kb on - strand, within CCNA_02253at 2403.497 kb on + strand, within CCNA_02253at 2403.534 kb on - strand, within CCNA_02253at 2403.534 kb on - strand, within CCNA_02253at 2403.577 kb on + strand, within CCNA_02253at 2403.577 kb on + strand, within CCNA_02253at 2403.642 kb on - strand, within CCNA_02253at 2403.668 kb on + strand, within CCNA_02253at 2403.676 kb on - strand, within CCNA_02253at 2403.681 kb on - strand, within CCNA_02253at 2403.731 kb on + strand, within CCNA_02253at 2403.757 kb on + strand, within CCNA_02253at 2403.764 kb on + strand, within CCNA_02253at 2403.765 kb on - strand, within CCNA_02253at 2403.817 kb on + strand, within CCNA_02253at 2403.817 kb on + strand, within CCNA_02253at 2403.818 kb on + strand, within CCNA_02253at 2403.826 kb on - strand, within CCNA_02253at 2403.891 kb on - strand, within CCNA_02253at 2403.924 kb on + strand, within CCNA_02253at 2403.956 kb on + strand, within CCNA_02253at 2403.969 kb on - strand, within CCNA_02253at 2403.988 kb on + strand, within CCNA_02253at 2404.013 kb on + strand, within CCNA_02253at 2404.041 kb on - strand, within CCNA_02253at 2404.079 kb on + strand, within CCNA_02253at 2404.079 kb on + strand, within CCNA_02253at 2404.097 kb on - strandat 2404.173 kb on + strandat 2404.182 kb on + strandat 2404.187 kb on - strandat 2404.197 kb on + strandat 2404.243 kb on + strandat 2404.255 kb on - strandat 2404.270 kb on + strandat 2404.317 kb on - strandat 2404.322 kb on + strandat 2404.322 kb on + strandat 2404.343 kb on + strand, within CCNA_03965at 2404.343 kb on + strand, within CCNA_03965at 2404.518 kb on - strandat 2404.518 kb on - strandat 2404.518 kb on - strandat 2404.590 kb on - strandat 2404.629 kb on + strandat 2404.658 kb on - strand, within CCNA_02254at 2404.659 kb on - strand, within CCNA_02254at 2404.700 kb on - strand, within CCNA_02254at 2404.736 kb on - strand, within CCNA_02254at 2404.737 kb on - strand, within CCNA_02254at 2404.749 kb on - strand, within CCNA_02254at 2404.749 kb on - strand, within CCNA_02254at 2404.815 kb on - strand, within CCNA_02254at 2404.896 kb on - strandat 2405.096 kb on - strand, within CCNA_02254at 2405.154 kb on - strand, within CCNA_02254at 2405.159 kb on - strandat 2405.225 kb on + strand, within CCNA_02254at 2405.263 kb on - strand, within CCNA_02254at 2405.282 kb on + strand, within CCNA_02254at 2405.378 kb on + strand, within CCNA_02254at 2405.386 kb on - strand, within CCNA_02254at 2405.397 kb on + strand, within CCNA_02254

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE with benzoic 0.2 mg/ml
remove
2,403,398 - CCNA_02253 0.51 -0.2
2,403,398 - CCNA_02253 0.51 -1.1
2,403,448 - CCNA_02253 0.54 +1.2
2,403,497 + CCNA_02253 0.57 +0.3
2,403,534 - CCNA_02253 0.59 +0.3
2,403,534 - CCNA_02253 0.59 -1.1
2,403,577 + CCNA_02253 0.61 +0.5
2,403,577 + CCNA_02253 0.61 +0.8
2,403,642 - CCNA_02253 0.65 -2.2
2,403,668 + CCNA_02253 0.66 -1.5
2,403,676 - CCNA_02253 0.67 -0.8
2,403,681 - CCNA_02253 0.67 -0.8
2,403,731 + CCNA_02253 0.70 +1.1
2,403,757 + CCNA_02253 0.71 +0.9
2,403,764 + CCNA_02253 0.72 -0.1
2,403,765 - CCNA_02253 0.72 -1.5
2,403,817 + CCNA_02253 0.75 +0.9
2,403,817 + CCNA_02253 0.75 -0.2
2,403,818 + CCNA_02253 0.75 -2.4
2,403,826 - CCNA_02253 0.75 -0.4
2,403,891 - CCNA_02253 0.79 -1.6
2,403,924 + CCNA_02253 0.81 +0.2
2,403,956 + CCNA_02253 0.82 +0.4
2,403,969 - CCNA_02253 0.83 +0.4
2,403,988 + CCNA_02253 0.84 -0.7
2,404,013 + CCNA_02253 0.86 +1.2
2,404,041 - CCNA_02253 0.87 -0.4
2,404,079 + CCNA_02253 0.89 -0.7
2,404,079 + CCNA_02253 0.89 +0.2
2,404,097 - -1.5
2,404,173 + +1.9
2,404,182 + +2.8
2,404,187 - +1.2
2,404,197 + -0.6
2,404,243 + +0.2
2,404,255 - -0.4
2,404,270 + +0.9
2,404,317 - -0.2
2,404,322 + +1.6
2,404,322 + +0.4
2,404,343 + CCNA_03965 0.23 +1.8
2,404,343 + CCNA_03965 0.23 +1.6
2,404,518 - +2.2
2,404,518 - +3.2
2,404,518 - +2.8
2,404,590 - -0.5
2,404,629 + -0.4
2,404,658 - CCNA_02254 0.12 -0.6
2,404,659 - CCNA_02254 0.12 -1.7
2,404,700 - CCNA_02254 0.16 +2.5
2,404,736 - CCNA_02254 0.19 +0.1
2,404,737 - CCNA_02254 0.19 +0.4
2,404,749 - CCNA_02254 0.20 -0.4
2,404,749 - CCNA_02254 0.20 -1.7
2,404,815 - CCNA_02254 0.26 -0.3
2,404,896 - +1.6
2,405,096 - CCNA_02254 0.50 +1.2
2,405,154 - CCNA_02254 0.55 +0.6
2,405,159 - +1.2
2,405,225 + CCNA_02254 0.61 -1.0
2,405,263 - CCNA_02254 0.64 -0.6
2,405,282 + CCNA_02254 0.66 -0.4
2,405,378 + CCNA_02254 0.74 +2.2
2,405,386 - CCNA_02254 0.75 -0.8
2,405,397 + CCNA_02254 0.76 -1.1

Or see this region's nucleotide sequence