Experiment: PYE with benzoic 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03585 and CCNA_03586 overlap by 4 nucleotides CCNA_03586 and CCNA_03587 are separated by 59 nucleotides CCNA_03587 and CCNA_03588 are separated by 89 nucleotides
CCNA_03585: CCNA_03585 - chemotaxis receiver domain protein CheYIV, at 3,740,756 to 3,741,133
_03585
CCNA_03586: CCNA_03586 - chemotaxis protein methyltransferase, at 3,741,130 to 3,741,960
_03586
CCNA_03587: CCNA_03587 - entericidin B-like protein, at 3,742,020 to 3,742,163
_03587
CCNA_03588: CCNA_03588 - two-component sensor histidine kinase PhyK, at 3,742,253 to 3,743,956
_03588
Position (kb)
3742
3743 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3741.022 kb on - strand, within CCNA_03585 at 3741.022 kb on - strand, within CCNA_03585 at 3741.022 kb on - strand, within CCNA_03585 at 3741.022 kb on - strand, within CCNA_03585 at 3741.022 kb on - strand, within CCNA_03585 at 3741.022 kb on - strand, within CCNA_03585 at 3741.042 kb on - strand, within CCNA_03585 at 3741.052 kb on - strand, within CCNA_03585 at 3741.142 kb on + strand at 3741.160 kb on + strand at 3741.160 kb on + strand at 3741.160 kb on + strand at 3741.160 kb on + strand at 3741.168 kb on - strand at 3741.213 kb on - strand, within CCNA_03586 at 3741.233 kb on + strand, within CCNA_03586 at 3741.249 kb on + strand, within CCNA_03586 at 3741.250 kb on + strand, within CCNA_03586 at 3741.273 kb on + strand, within CCNA_03586 at 3741.281 kb on - strand, within CCNA_03586 at 3741.281 kb on - strand, within CCNA_03586 at 3741.282 kb on + strand, within CCNA_03586 at 3741.309 kb on + strand, within CCNA_03586 at 3741.309 kb on + strand, within CCNA_03586 at 3741.333 kb on + strand, within CCNA_03586 at 3741.370 kb on + strand, within CCNA_03586 at 3741.397 kb on - strand, within CCNA_03586 at 3741.403 kb on + strand, within CCNA_03586 at 3741.508 kb on + strand, within CCNA_03586 at 3741.510 kb on - strand, within CCNA_03586 at 3741.513 kb on + strand, within CCNA_03586 at 3741.521 kb on - strand, within CCNA_03586 at 3741.624 kb on - strand, within CCNA_03586 at 3741.641 kb on - strand, within CCNA_03586 at 3741.654 kb on + strand, within CCNA_03586 at 3741.655 kb on + strand, within CCNA_03586 at 3741.662 kb on + strand, within CCNA_03586 at 3741.707 kb on + strand, within CCNA_03586 at 3741.743 kb on + strand, within CCNA_03586 at 3741.757 kb on + strand, within CCNA_03586 at 3741.812 kb on - strand, within CCNA_03586 at 3741.815 kb on + strand, within CCNA_03586 at 3741.850 kb on + strand, within CCNA_03586 at 3741.850 kb on - strand, within CCNA_03586 at 3741.865 kb on - strand, within CCNA_03586 at 3741.896 kb on + strand at 3741.934 kb on + strand at 3741.934 kb on + strand at 3741.942 kb on - strand at 3741.987 kb on + strand at 3742.011 kb on + strand at 3742.049 kb on - strand, within CCNA_03587 at 3742.049 kb on - strand, within CCNA_03587 at 3742.077 kb on + strand, within CCNA_03587 at 3742.077 kb on + strand, within CCNA_03587 at 3742.099 kb on + strand, within CCNA_03587 at 3742.135 kb on - strand, within CCNA_03587 at 3742.136 kb on - strand, within CCNA_03587 at 3742.144 kb on - strand, within CCNA_03587 at 3742.191 kb on - strand at 3742.216 kb on + strand at 3742.224 kb on - strand at 3742.253 kb on - strand at 3742.253 kb on - strand at 3742.253 kb on - strand at 3742.265 kb on + strand at 3742.300 kb on + strand at 3742.308 kb on - strand at 3742.349 kb on - strand at 3742.417 kb on - strand at 3742.417 kb on - strand at 3742.425 kb on + strand, within CCNA_03588 at 3742.461 kb on + strand, within CCNA_03588 at 3742.510 kb on - strand, within CCNA_03588 at 3742.576 kb on + strand, within CCNA_03588 at 3742.589 kb on - strand, within CCNA_03588 at 3742.593 kb on + strand, within CCNA_03588 at 3742.647 kb on + strand, within CCNA_03588 at 3742.655 kb on - strand, within CCNA_03588 at 3742.675 kb on + strand, within CCNA_03588 at 3742.690 kb on + strand, within CCNA_03588 at 3742.713 kb on + strand, within CCNA_03588 at 3742.719 kb on + strand, within CCNA_03588 at 3742.726 kb on - strand, within CCNA_03588 at 3742.726 kb on - strand, within CCNA_03588 at 3742.815 kb on - strand, within CCNA_03588 at 3742.864 kb on - strand, within CCNA_03588 at 3742.884 kb on - strand, within CCNA_03588 at 3742.886 kb on + strand, within CCNA_03588 at 3742.886 kb on + strand, within CCNA_03588 at 3742.894 kb on - strand, within CCNA_03588 at 3742.966 kb on - strand, within CCNA_03588 at 3742.993 kb on + strand, within CCNA_03588 at 3743.080 kb on - strand, within CCNA_03588 at 3743.080 kb on - strand, within CCNA_03588
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with benzoic 0.2 mg/ml remove 3,741,022 - CCNA_03585 0.70 +0.5 3,741,022 - CCNA_03585 0.70 -0.7 3,741,022 - CCNA_03585 0.70 +0.5 3,741,022 - CCNA_03585 0.70 -0.9 3,741,022 - CCNA_03585 0.70 -0.3 3,741,022 - CCNA_03585 0.70 -1.9 3,741,042 - CCNA_03585 0.76 -1.1 3,741,052 - CCNA_03585 0.78 -1.6 3,741,142 + -0.1 3,741,160 + +1.4 3,741,160 + +1.1 3,741,160 + +1.5 3,741,160 + +0.6 3,741,168 - -0.7 3,741,213 - CCNA_03586 0.10 -0.2 3,741,233 + CCNA_03586 0.12 +2.4 3,741,249 + CCNA_03586 0.14 +3.0 3,741,250 + CCNA_03586 0.14 +1.1 3,741,273 + CCNA_03586 0.17 +1.1 3,741,281 - CCNA_03586 0.18 +1.0 3,741,281 - CCNA_03586 0.18 -1.4 3,741,282 + CCNA_03586 0.18 +0.9 3,741,309 + CCNA_03586 0.22 +1.6 3,741,309 + CCNA_03586 0.22 +1.6 3,741,333 + CCNA_03586 0.24 +1.4 3,741,370 + CCNA_03586 0.29 +2.0 3,741,397 - CCNA_03586 0.32 -0.7 3,741,403 + CCNA_03586 0.33 +0.2 3,741,508 + CCNA_03586 0.45 +2.4 3,741,510 - CCNA_03586 0.46 -0.1 3,741,513 + CCNA_03586 0.46 +1.4 3,741,521 - CCNA_03586 0.47 -0.2 3,741,624 - CCNA_03586 0.59 -0.5 3,741,641 - CCNA_03586 0.61 -1.5 3,741,654 + CCNA_03586 0.63 +0.7 3,741,655 + CCNA_03586 0.63 +1.5 3,741,662 + CCNA_03586 0.64 +1.8 3,741,707 + CCNA_03586 0.69 +0.8 3,741,743 + CCNA_03586 0.74 +1.5 3,741,757 + CCNA_03586 0.75 +1.8 3,741,812 - CCNA_03586 0.82 +0.1 3,741,815 + CCNA_03586 0.82 +2.2 3,741,850 + CCNA_03586 0.87 +1.5 3,741,850 - CCNA_03586 0.87 -0.5 3,741,865 - CCNA_03586 0.88 +1.5 3,741,896 + +0.8 3,741,934 + +1.6 3,741,934 + +1.5 3,741,942 - -2.5 3,741,987 + -0.4 3,742,011 + -0.1 3,742,049 - CCNA_03587 0.20 +2.3 3,742,049 - CCNA_03587 0.20 +1.3 3,742,077 + CCNA_03587 0.40 +1.3 3,742,077 + CCNA_03587 0.40 +1.5 3,742,099 + CCNA_03587 0.55 +1.1 3,742,135 - CCNA_03587 0.80 +0.6 3,742,136 - CCNA_03587 0.81 +0.9 3,742,144 - CCNA_03587 0.86 +1.2 3,742,191 - +2.4 3,742,216 + +0.2 3,742,224 - +1.0 3,742,253 - +1.1 3,742,253 - +1.4 3,742,253 - +3.1 3,742,265 + -0.6 3,742,300 + +1.5 3,742,308 - +0.9 3,742,349 - +0.3 3,742,417 - +0.5 3,742,417 - +0.1 3,742,425 + CCNA_03588 0.10 +2.1 3,742,461 + CCNA_03588 0.12 -0.2 3,742,510 - CCNA_03588 0.15 +0.1 3,742,576 + CCNA_03588 0.19 +1.5 3,742,589 - CCNA_03588 0.20 +0.5 3,742,593 + CCNA_03588 0.20 +0.1 3,742,647 + CCNA_03588 0.23 +0.1 3,742,655 - CCNA_03588 0.24 -1.5 3,742,675 + CCNA_03588 0.25 -1.1 3,742,690 + CCNA_03588 0.26 +1.1 3,742,713 + CCNA_03588 0.27 +2.1 3,742,719 + CCNA_03588 0.27 -1.2 3,742,726 - CCNA_03588 0.28 -1.1 3,742,726 - CCNA_03588 0.28 -0.7 3,742,815 - CCNA_03588 0.33 -0.7 3,742,864 - CCNA_03588 0.36 +0.5 3,742,884 - CCNA_03588 0.37 +2.9 3,742,886 + CCNA_03588 0.37 +0.5 3,742,886 + CCNA_03588 0.37 -0.9 3,742,894 - CCNA_03588 0.38 -1.5 3,742,966 - CCNA_03588 0.42 -0.5 3,742,993 + CCNA_03588 0.43 -0.7 3,743,080 - CCNA_03588 0.49 -2.1 3,743,080 - CCNA_03588 0.49 +2.1
Or see this region's nucleotide sequence