Experiment: PYE with benzoic 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03192 and CCNA_03193 overlap by 1 nucleotides CCNA_03193 and CCNA_03194 are separated by 13 nucleotides CCNA_03194 and CCNA_03987 are separated by 84 nucleotides CCNA_03987 and CCNA_03195 overlap by 4 nucleotides
CCNA_03192: CCNA_03192 - carboxymuconolactone decarboxylase family protein, at 3,353,828 to 3,354,463
_03192
CCNA_03193: CCNA_03193 - lactoylglutathione lyase, at 3,354,463 to 3,355,041
_03193
CCNA_03194: CCNA_03194 - conserved inner membrane protein, at 3,355,055 to 3,355,417
_03194
CCNA_03987: CCNA_03987 - hypothetical protein, at 3,355,502 to 3,355,606
_03987
CCNA_03195: CCNA_03195 - RNA polymerase sigma factor RpoH, at 3,355,603 to 3,356,499
_03195
Position (kb)
3355
3356 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 3354.057 kb on - strand, within CCNA_03192 at 3354.058 kb on - strand, within CCNA_03192 at 3354.058 kb on - strand, within CCNA_03192 at 3354.068 kb on + strand, within CCNA_03192 at 3354.068 kb on + strand, within CCNA_03192 at 3354.068 kb on + strand, within CCNA_03192 at 3354.068 kb on + strand, within CCNA_03192 at 3354.068 kb on + strand, within CCNA_03192 at 3354.068 kb on + strand, within CCNA_03192 at 3354.068 kb on + strand, within CCNA_03192 at 3354.068 kb on + strand, within CCNA_03192 at 3354.068 kb on + strand, within CCNA_03192 at 3354.068 kb on + strand, within CCNA_03192 at 3354.068 kb on + strand, within CCNA_03192 at 3354.068 kb on + strand, within CCNA_03192 at 3354.068 kb on + strand, within CCNA_03192 at 3354.068 kb on + strand, within CCNA_03192 at 3354.068 kb on + strand, within CCNA_03192 at 3354.076 kb on - strand, within CCNA_03192 at 3354.076 kb on - strand, within CCNA_03192 at 3354.076 kb on - strand, within CCNA_03192 at 3354.076 kb on - strand, within CCNA_03192 at 3354.076 kb on - strand, within CCNA_03192 at 3354.085 kb on + strand, within CCNA_03192 at 3354.114 kb on - strand, within CCNA_03192 at 3354.116 kb on + strand, within CCNA_03192 at 3354.116 kb on + strand, within CCNA_03192 at 3354.124 kb on - strand, within CCNA_03192 at 3354.124 kb on - strand, within CCNA_03192 at 3354.139 kb on + strand, within CCNA_03192 at 3354.156 kb on - strand, within CCNA_03192 at 3354.156 kb on - strand at 3354.156 kb on - strand, within CCNA_03192 at 3354.203 kb on + strand, within CCNA_03192 at 3354.218 kb on + strand, within CCNA_03192 at 3354.218 kb on + strand, within CCNA_03192 at 3354.218 kb on + strand, within CCNA_03192 at 3354.218 kb on + strand, within CCNA_03192 at 3354.218 kb on + strand, within CCNA_03192 at 3354.226 kb on - strand, within CCNA_03192 at 3354.229 kb on + strand, within CCNA_03192 at 3354.238 kb on + strand, within CCNA_03192 at 3354.281 kb on + strand, within CCNA_03192 at 3354.281 kb on + strand, within CCNA_03192 at 3354.281 kb on + strand, within CCNA_03192 at 3354.289 kb on - strand, within CCNA_03192 at 3354.289 kb on - strand, within CCNA_03192 at 3354.289 kb on - strand, within CCNA_03192 at 3354.312 kb on - strand, within CCNA_03192 at 3354.317 kb on + strand, within CCNA_03192 at 3354.379 kb on - strand, within CCNA_03192 at 3354.387 kb on + strand, within CCNA_03192 at 3354.387 kb on + strand, within CCNA_03192 at 3354.399 kb on + strand, within CCNA_03192 at 3354.399 kb on + strand, within CCNA_03192 at 3354.407 kb on - strand at 3354.407 kb on - strand at 3354.414 kb on - strand at 3354.430 kb on - strand at 3354.444 kb on + strand at 3354.469 kb on + strand at 3354.487 kb on - strand at 3354.561 kb on - strand, within CCNA_03193 at 3354.565 kb on + strand, within CCNA_03193 at 3354.565 kb on + strand, within CCNA_03193 at 3354.569 kb on - strand, within CCNA_03193 at 3354.573 kb on - strand, within CCNA_03193 at 3354.677 kb on + strand, within CCNA_03193 at 3354.690 kb on + strand, within CCNA_03193 at 3354.720 kb on - strand, within CCNA_03193 at 3354.725 kb on - strand, within CCNA_03193 at 3354.746 kb on + strand, within CCNA_03193 at 3354.746 kb on + strand, within CCNA_03193 at 3354.746 kb on + strand, within CCNA_03193 at 3354.746 kb on + strand, within CCNA_03193 at 3354.754 kb on - strand, within CCNA_03193 at 3354.766 kb on - strand, within CCNA_03193 at 3354.766 kb on - strand, within CCNA_03193 at 3354.774 kb on - strand, within CCNA_03193 at 3354.775 kb on - strand, within CCNA_03193 at 3354.775 kb on - strand, within CCNA_03193 at 3354.775 kb on - strand, within CCNA_03193 at 3354.817 kb on + strand, within CCNA_03193 at 3354.823 kb on + strand, within CCNA_03193 at 3354.830 kb on - strand, within CCNA_03193 at 3354.836 kb on - strand, within CCNA_03193 at 3354.867 kb on - strand, within CCNA_03193 at 3354.869 kb on + strand at 3354.887 kb on + strand, within CCNA_03193 at 3354.887 kb on + strand, within CCNA_03193 at 3354.887 kb on + strand, within CCNA_03193 at 3354.887 kb on + strand, within CCNA_03193 at 3354.887 kb on + strand, within CCNA_03193 at 3354.887 kb on + strand, within CCNA_03193 at 3354.887 kb on + strand, within CCNA_03193 at 3354.895 kb on - strand, within CCNA_03193 at 3354.895 kb on - strand, within CCNA_03193 at 3354.895 kb on - strand, within CCNA_03193 at 3354.895 kb on - strand, within CCNA_03193 at 3354.895 kb on - strand, within CCNA_03193 at 3354.895 kb on - strand, within CCNA_03193 at 3354.895 kb on - strand, within CCNA_03193 at 3354.895 kb on - strand, within CCNA_03193 at 3354.909 kb on + strand, within CCNA_03193 at 3354.915 kb on + strand, within CCNA_03193 at 3354.917 kb on + strand, within CCNA_03193 at 3354.917 kb on + strand, within CCNA_03193 at 3354.925 kb on - strand, within CCNA_03193 at 3354.925 kb on - strand, within CCNA_03193 at 3354.932 kb on + strand, within CCNA_03193 at 3354.950 kb on - strand, within CCNA_03193 at 3354.960 kb on - strand, within CCNA_03193 at 3354.963 kb on + strand, within CCNA_03193 at 3355.090 kb on - strand at 3355.122 kb on - strand, within CCNA_03194 at 3355.122 kb on - strand, within CCNA_03194 at 3355.159 kb on + strand, within CCNA_03194 at 3355.159 kb on + strand, within CCNA_03194 at 3355.167 kb on - strand, within CCNA_03194 at 3355.167 kb on - strand, within CCNA_03194 at 3355.167 kb on - strand, within CCNA_03194 at 3355.167 kb on - strand, within CCNA_03194 at 3355.167 kb on - strand, within CCNA_03194 at 3355.167 kb on - strand, within CCNA_03194 at 3355.169 kb on + strand, within CCNA_03194 at 3355.177 kb on - strand, within CCNA_03194 at 3355.228 kb on - strand, within CCNA_03194 at 3355.233 kb on - strand, within CCNA_03194 at 3355.241 kb on + strand, within CCNA_03194 at 3355.249 kb on - strand, within CCNA_03194 at 3355.249 kb on - strand, within CCNA_03194 at 3355.270 kb on - strand, within CCNA_03194 at 3355.314 kb on - strand, within CCNA_03194 at 3355.319 kb on - strand, within CCNA_03194 at 3355.319 kb on - strand, within CCNA_03194 at 3355.332 kb on - strand, within CCNA_03194 at 3355.332 kb on - strand, within CCNA_03194 at 3355.341 kb on + strand, within CCNA_03194 at 3355.355 kb on + strand, within CCNA_03194 at 3355.412 kb on + strand at 3355.412 kb on + strand at 3355.412 kb on + strand at 3355.420 kb on + strand at 3355.420 kb on - strand at 3355.420 kb on - strand at 3355.445 kb on + strand at 3355.446 kb on + strand at 3355.515 kb on + strand, within CCNA_03987 at 3355.523 kb on - strand, within CCNA_03987 at 3355.523 kb on - strand, within CCNA_03987 at 3355.523 kb on - strand, within CCNA_03987 at 3355.545 kb on - strand, within CCNA_03987
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with benzoic 0.2 mg/ml remove 3,354,057 - CCNA_03192 0.36 -1.1 3,354,058 - CCNA_03192 0.36 +2.0 3,354,058 - CCNA_03192 0.36 +0.1 3,354,068 + CCNA_03192 0.38 +0.6 3,354,068 + CCNA_03192 0.38 -2.4 3,354,068 + CCNA_03192 0.38 +0.4 3,354,068 + CCNA_03192 0.38 -1.5 3,354,068 + CCNA_03192 0.38 -0.7 3,354,068 + CCNA_03192 0.38 +1.2 3,354,068 + CCNA_03192 0.38 +0.4 3,354,068 + CCNA_03192 0.38 +0.4 3,354,068 + CCNA_03192 0.38 -0.4 3,354,068 + CCNA_03192 0.38 +0.8 3,354,068 + CCNA_03192 0.38 +0.4 3,354,068 + CCNA_03192 0.38 +0.1 3,354,068 + CCNA_03192 0.38 +2.4 3,354,068 + CCNA_03192 0.38 +1.4 3,354,068 + CCNA_03192 0.38 -0.3 3,354,076 - CCNA_03192 0.39 -0.8 3,354,076 - CCNA_03192 0.39 -0.9 3,354,076 - CCNA_03192 0.39 -0.6 3,354,076 - CCNA_03192 0.39 -0.2 3,354,076 - CCNA_03192 0.39 +2.7 3,354,085 + CCNA_03192 0.40 +1.4 3,354,114 - CCNA_03192 0.45 +1.4 3,354,116 + CCNA_03192 0.45 -0.9 3,354,116 + CCNA_03192 0.45 -0.6 3,354,124 - CCNA_03192 0.47 -0.1 3,354,124 - CCNA_03192 0.47 -0.2 3,354,139 + CCNA_03192 0.49 +2.1 3,354,156 - CCNA_03192 0.52 -0.8 3,354,156 - +0.4 3,354,156 - CCNA_03192 0.52 +0.8 3,354,203 + CCNA_03192 0.59 +0.8 3,354,218 + CCNA_03192 0.61 +1.4 3,354,218 + CCNA_03192 0.61 +0.2 3,354,218 + CCNA_03192 0.61 +1.4 3,354,218 + CCNA_03192 0.61 +1.4 3,354,218 + CCNA_03192 0.61 +0.4 3,354,226 - CCNA_03192 0.63 +0.6 3,354,229 + CCNA_03192 0.63 +0.1 3,354,238 + CCNA_03192 0.64 +4.4 3,354,281 + CCNA_03192 0.71 -0.9 3,354,281 + CCNA_03192 0.71 -0.6 3,354,281 + CCNA_03192 0.71 -1.8 3,354,289 - CCNA_03192 0.72 -1.1 3,354,289 - CCNA_03192 0.72 -0.9 3,354,289 - CCNA_03192 0.72 +0.3 3,354,312 - CCNA_03192 0.76 -0.2 3,354,317 + CCNA_03192 0.77 +1.1 3,354,379 - CCNA_03192 0.87 -2.1 3,354,387 + CCNA_03192 0.88 -0.6 3,354,387 + CCNA_03192 0.88 -0.4 3,354,399 + CCNA_03192 0.90 -1.5 3,354,399 + CCNA_03192 0.90 -0.3 3,354,407 - -0.7 3,354,407 - -0.4 3,354,414 - +2.4 3,354,430 - +1.8 3,354,444 + -0.9 3,354,469 + -0.4 3,354,487 - -2.4 3,354,561 - CCNA_03193 0.17 -1.2 3,354,565 + CCNA_03193 0.18 +1.0 3,354,565 + CCNA_03193 0.18 -1.3 3,354,569 - CCNA_03193 0.18 +0.1 3,354,573 - CCNA_03193 0.19 +0.4 3,354,677 + CCNA_03193 0.37 +1.7 3,354,690 + CCNA_03193 0.39 +0.8 3,354,720 - CCNA_03193 0.44 -0.4 3,354,725 - CCNA_03193 0.45 +1.4 3,354,746 + CCNA_03193 0.49 +0.5 3,354,746 + CCNA_03193 0.49 +1.8 3,354,746 + CCNA_03193 0.49 -0.7 3,354,746 + CCNA_03193 0.49 +0.8 3,354,754 - CCNA_03193 0.50 -0.4 3,354,766 - CCNA_03193 0.52 -0.6 3,354,766 - CCNA_03193 0.52 -0.7 3,354,774 - CCNA_03193 0.54 +0.2 3,354,775 - CCNA_03193 0.54 +0.8 3,354,775 - CCNA_03193 0.54 -0.4 3,354,775 - CCNA_03193 0.54 -0.2 3,354,817 + CCNA_03193 0.61 +0.4 3,354,823 + CCNA_03193 0.62 -0.6 3,354,830 - CCNA_03193 0.63 +1.8 3,354,836 - CCNA_03193 0.64 +1.4 3,354,867 - CCNA_03193 0.70 -0.9 3,354,869 + +2.4 3,354,887 + CCNA_03193 0.73 +2.4 3,354,887 + CCNA_03193 0.73 +1.4 3,354,887 + CCNA_03193 0.73 -1.5 3,354,887 + CCNA_03193 0.73 -0.7 3,354,887 + CCNA_03193 0.73 +0.4 3,354,887 + CCNA_03193 0.73 -0.2 3,354,887 + CCNA_03193 0.73 -1.4 3,354,895 - CCNA_03193 0.75 +0.4 3,354,895 - CCNA_03193 0.75 +1.1 3,354,895 - CCNA_03193 0.75 -0.4 3,354,895 - CCNA_03193 0.75 +0.4 3,354,895 - CCNA_03193 0.75 +0.4 3,354,895 - CCNA_03193 0.75 -0.4 3,354,895 - CCNA_03193 0.75 -0.4 3,354,895 - CCNA_03193 0.75 -0.2 3,354,909 + CCNA_03193 0.77 -1.2 3,354,915 + CCNA_03193 0.78 -1.9 3,354,917 + CCNA_03193 0.78 -1.5 3,354,917 + CCNA_03193 0.78 +2.4 3,354,925 - CCNA_03193 0.80 +0.1 3,354,925 - CCNA_03193 0.80 +0.4 3,354,932 + CCNA_03193 0.81 -0.2 3,354,950 - CCNA_03193 0.84 +0.4 3,354,960 - CCNA_03193 0.86 +0.1 3,354,963 + CCNA_03193 0.86 +1.4 3,355,090 - +0.4 3,355,122 - CCNA_03194 0.18 +1.4 3,355,122 - CCNA_03194 0.18 +1.8 3,355,159 + CCNA_03194 0.29 -1.1 3,355,159 + CCNA_03194 0.29 +1.4 3,355,167 - CCNA_03194 0.31 +2.1 3,355,167 - CCNA_03194 0.31 +0.7 3,355,167 - CCNA_03194 0.31 +2.2 3,355,167 - CCNA_03194 0.31 +1.6 3,355,167 - CCNA_03194 0.31 +1.7 3,355,167 - CCNA_03194 0.31 +2.0 3,355,169 + CCNA_03194 0.31 +0.1 3,355,177 - CCNA_03194 0.34 -0.6 3,355,228 - CCNA_03194 0.48 -1.5 3,355,233 - CCNA_03194 0.49 +0.8 3,355,241 + CCNA_03194 0.51 +0.4 3,355,249 - CCNA_03194 0.53 -1.5 3,355,249 - CCNA_03194 0.53 +0.6 3,355,270 - CCNA_03194 0.59 +2.7 3,355,314 - CCNA_03194 0.71 -0.4 3,355,319 - CCNA_03194 0.73 +1.4 3,355,319 - CCNA_03194 0.73 +0.4 3,355,332 - CCNA_03194 0.76 -1.8 3,355,332 - CCNA_03194 0.76 +1.7 3,355,341 + CCNA_03194 0.79 +1.1 3,355,355 + CCNA_03194 0.83 +0.1 3,355,412 + -0.4 3,355,412 + +0.1 3,355,412 + +1.4 3,355,420 + -1.1 3,355,420 - -2.5 3,355,420 - +2.4 3,355,445 + +0.8 3,355,446 + -1.4 3,355,515 + CCNA_03987 0.12 -0.2 3,355,523 - CCNA_03987 0.20 -0.6 3,355,523 - CCNA_03987 0.20 +0.8 3,355,523 - CCNA_03987 0.20 +0.1 3,355,545 - CCNA_03987 0.41 +0.8
Or see this region's nucleotide sequence