Experiment: PYE with benzoic 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02718 and CCNA_02719 are separated by 61 nucleotides CCNA_02719 and CCNA_02720 overlap by 4 nucleotides CCNA_02720 and CCNA_02721 are separated by 96 nucleotides
CCNA_02718: CCNA_02718 - taurine transport system permease protein tauC, at 2,879,117 to 2,879,875
_02718
CCNA_02719: CCNA_02719 - hypothetical protein, at 2,879,937 to 2,880,551
_02719
CCNA_02720: CCNA_02720 - hypothetical protein, at 2,880,548 to 2,881,636
_02720
CCNA_02721: CCNA_02721 - peptidase, M16 family, at 2,881,733 to 2,884,663
_02721
Position (kb)
2880
2881
2882 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2879.612 kb on + strand, within CCNA_02718 at 2879.612 kb on + strand, within CCNA_02718 at 2879.612 kb on + strand, within CCNA_02718 at 2879.612 kb on + strand, within CCNA_02718 at 2879.620 kb on - strand, within CCNA_02718 at 2879.622 kb on + strand, within CCNA_02718 at 2879.625 kb on - strand, within CCNA_02718 at 2879.627 kb on + strand, within CCNA_02718 at 2879.638 kb on + strand, within CCNA_02718 at 2879.646 kb on - strand, within CCNA_02718 at 2879.647 kb on + strand, within CCNA_02718 at 2879.658 kb on - strand, within CCNA_02718 at 2879.677 kb on - strand, within CCNA_02718 at 2879.722 kb on + strand, within CCNA_02718 at 2879.731 kb on - strand, within CCNA_02718 at 2879.746 kb on - strand, within CCNA_02718 at 2879.773 kb on + strand, within CCNA_02718 at 2879.773 kb on + strand, within CCNA_02718 at 2879.774 kb on - strand, within CCNA_02718 at 2879.781 kb on - strand, within CCNA_02718 at 2879.782 kb on - strand, within CCNA_02718 at 2879.788 kb on + strand, within CCNA_02718 at 2879.791 kb on - strand, within CCNA_02718 at 2879.816 kb on - strand at 2879.880 kb on + strand at 2879.888 kb on - strand at 2879.889 kb on - strand at 2879.895 kb on + strand at 2879.895 kb on + strand at 2879.895 kb on + strand at 2879.900 kb on + strand at 2879.903 kb on - strand at 2879.903 kb on - strand at 2879.919 kb on - strand at 2879.961 kb on + strand at 2879.961 kb on + strand at 2879.961 kb on + strand at 2879.961 kb on + strand at 2879.961 kb on + strand at 2879.966 kb on + strand at 2879.966 kb on + strand at 2879.969 kb on - strand at 2879.969 kb on - strand at 2879.969 kb on - strand at 2879.969 kb on - strand at 2879.987 kb on + strand at 2880.011 kb on + strand, within CCNA_02719 at 2880.028 kb on + strand, within CCNA_02719 at 2880.028 kb on + strand, within CCNA_02719 at 2880.028 kb on + strand, within CCNA_02719 at 2880.029 kb on - strand, within CCNA_02719 at 2880.036 kb on - strand, within CCNA_02719 at 2880.062 kb on + strand, within CCNA_02719 at 2880.079 kb on + strand, within CCNA_02719 at 2880.086 kb on - strand, within CCNA_02719 at 2880.094 kb on + strand, within CCNA_02719 at 2880.121 kb on + strand, within CCNA_02719 at 2880.134 kb on + strand, within CCNA_02719 at 2880.147 kb on - strand, within CCNA_02719 at 2880.152 kb on - strand, within CCNA_02719 at 2880.158 kb on + strand, within CCNA_02719 at 2880.193 kb on - strand, within CCNA_02719 at 2880.240 kb on + strand, within CCNA_02719 at 2880.248 kb on - strand, within CCNA_02719 at 2880.249 kb on + strand, within CCNA_02719 at 2880.249 kb on + strand, within CCNA_02719 at 2880.277 kb on + strand, within CCNA_02719 at 2880.281 kb on + strand, within CCNA_02719 at 2880.287 kb on - strand, within CCNA_02719 at 2880.289 kb on - strand, within CCNA_02719 at 2880.312 kb on - strand, within CCNA_02719 at 2880.329 kb on - strand, within CCNA_02719 at 2880.357 kb on + strand, within CCNA_02719 at 2880.362 kb on + strand, within CCNA_02719 at 2880.365 kb on - strand, within CCNA_02719 at 2880.377 kb on - strand, within CCNA_02719 at 2880.403 kb on - strand, within CCNA_02719 at 2880.416 kb on + strand, within CCNA_02719 at 2880.432 kb on - strand, within CCNA_02719 at 2880.437 kb on + strand, within CCNA_02719 at 2880.449 kb on + strand, within CCNA_02719 at 2880.457 kb on - strand, within CCNA_02719 at 2880.458 kb on + strand, within CCNA_02719 at 2880.495 kb on + strand at 2880.503 kb on - strand at 2880.514 kb on + strand at 2880.522 kb on - strand at 2880.528 kb on + strand at 2880.575 kb on + strand at 2880.595 kb on - strand at 2880.599 kb on - strand at 2880.614 kb on + strand at 2880.622 kb on - strand at 2880.622 kb on - strand at 2880.647 kb on + strand at 2880.653 kb on + strand at 2880.653 kb on + strand at 2880.653 kb on + strand at 2880.653 kb on + strand at 2880.653 kb on + strand at 2880.653 kb on + strand at 2880.653 kb on + strand at 2880.653 kb on + strand at 2880.653 kb on + strand at 2880.653 kb on + strand at 2880.653 kb on + strand at 2880.653 kb on + strand at 2880.653 kb on + strand at 2880.653 kb on + strand at 2880.661 kb on - strand, within CCNA_02720 at 2880.661 kb on - strand, within CCNA_02720 at 2880.661 kb on - strand, within CCNA_02720 at 2880.661 kb on - strand, within CCNA_02720 at 2880.661 kb on - strand, within CCNA_02720 at 2880.661 kb on - strand, within CCNA_02720 at 2880.661 kb on - strand, within CCNA_02720 at 2880.661 kb on - strand, within CCNA_02720 at 2880.661 kb on - strand, within CCNA_02720 at 2880.661 kb on - strand, within CCNA_02720 at 2880.661 kb on - strand, within CCNA_02720 at 2880.661 kb on - strand, within CCNA_02720 at 2880.663 kb on - strand, within CCNA_02720 at 2880.663 kb on - strand, within CCNA_02720 at 2880.663 kb on - strand, within CCNA_02720 at 2880.668 kb on + strand, within CCNA_02720 at 2880.669 kb on + strand, within CCNA_02720 at 2880.676 kb on - strand, within CCNA_02720 at 2880.689 kb on + strand, within CCNA_02720 at 2880.697 kb on - strand, within CCNA_02720 at 2880.697 kb on - strand, within CCNA_02720 at 2880.723 kb on - strand, within CCNA_02720 at 2880.734 kb on + strand, within CCNA_02720 at 2880.737 kb on - strand, within CCNA_02720 at 2880.740 kb on + strand, within CCNA_02720 at 2880.742 kb on - strand, within CCNA_02720 at 2880.746 kb on + strand, within CCNA_02720 at 2880.765 kb on - strand, within CCNA_02720 at 2880.781 kb on + strand, within CCNA_02720 at 2880.781 kb on + strand, within CCNA_02720 at 2880.791 kb on + strand, within CCNA_02720 at 2880.823 kb on - strand, within CCNA_02720 at 2880.865 kb on + strand, within CCNA_02720 at 2880.883 kb on + strand, within CCNA_02720 at 2880.895 kb on + strand, within CCNA_02720 at 2880.920 kb on + strand, within CCNA_02720 at 2880.923 kb on + strand, within CCNA_02720 at 2880.965 kb on + strand, within CCNA_02720 at 2880.973 kb on - strand, within CCNA_02720 at 2881.004 kb on + strand, within CCNA_02720 at 2881.004 kb on + strand, within CCNA_02720 at 2881.004 kb on + strand, within CCNA_02720 at 2881.012 kb on - strand, within CCNA_02720 at 2881.039 kb on - strand, within CCNA_02720 at 2881.046 kb on + strand, within CCNA_02720 at 2881.048 kb on + strand, within CCNA_02720 at 2881.048 kb on + strand, within CCNA_02720 at 2881.048 kb on + strand, within CCNA_02720 at 2881.056 kb on - strand, within CCNA_02720 at 2881.056 kb on - strand, within CCNA_02720 at 2881.063 kb on + strand, within CCNA_02720 at 2881.063 kb on + strand, within CCNA_02720 at 2881.063 kb on + strand, within CCNA_02720 at 2881.071 kb on - strand, within CCNA_02720 at 2881.083 kb on + strand, within CCNA_02720 at 2881.083 kb on + strand, within CCNA_02720 at 2881.083 kb on + strand, within CCNA_02720 at 2881.128 kb on - strand, within CCNA_02720 at 2881.169 kb on + strand, within CCNA_02720 at 2881.169 kb on + strand, within CCNA_02720 at 2881.169 kb on + strand, within CCNA_02720 at 2881.169 kb on + strand, within CCNA_02720 at 2881.169 kb on + strand, within CCNA_02720 at 2881.169 kb on + strand, within CCNA_02720 at 2881.177 kb on - strand, within CCNA_02720 at 2881.187 kb on - strand, within CCNA_02720 at 2881.197 kb on - strand, within CCNA_02720 at 2881.226 kb on + strand, within CCNA_02720 at 2881.226 kb on + strand, within CCNA_02720 at 2881.231 kb on + strand, within CCNA_02720 at 2881.239 kb on - strand, within CCNA_02720 at 2881.243 kb on + strand, within CCNA_02720 at 2881.255 kb on + strand, within CCNA_02720 at 2881.374 kb on - strand, within CCNA_02720 at 2881.431 kb on + strand, within CCNA_02720 at 2881.459 kb on - strand, within CCNA_02720 at 2881.474 kb on + strand, within CCNA_02720 at 2881.474 kb on + strand, within CCNA_02720 at 2881.474 kb on + strand, within CCNA_02720 at 2881.483 kb on - strand, within CCNA_02720 at 2881.492 kb on + strand, within CCNA_02720 at 2881.492 kb on + strand, within CCNA_02720 at 2881.497 kb on + strand, within CCNA_02720 at 2881.497 kb on + strand, within CCNA_02720 at 2881.500 kb on - strand, within CCNA_02720 at 2881.505 kb on - strand, within CCNA_02720 at 2881.505 kb on - strand, within CCNA_02720 at 2881.507 kb on + strand, within CCNA_02720 at 2881.528 kb on + strand at 2881.547 kb on - strand at 2881.554 kb on - strand at 2881.569 kb on + strand at 2881.591 kb on + strand at 2881.591 kb on + strand at 2881.631 kb on + strand at 2881.631 kb on + strand at 2881.631 kb on + strand at 2881.631 kb on + strand at 2881.631 kb on + strand at 2881.631 kb on + strand at 2881.647 kb on + strand at 2881.690 kb on + strand at 2881.700 kb on - strand at 2881.719 kb on + strand at 2881.724 kb on + strand at 2881.735 kb on + strand at 2881.743 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with benzoic 0.2 mg/ml remove 2,879,612 + CCNA_02718 0.65 +0.8 2,879,612 + CCNA_02718 0.65 +0.7 2,879,612 + CCNA_02718 0.65 +0.2 2,879,612 + CCNA_02718 0.65 +2.0 2,879,620 - CCNA_02718 0.66 +0.9 2,879,622 + CCNA_02718 0.67 -0.7 2,879,625 - CCNA_02718 0.67 +1.5 2,879,627 + CCNA_02718 0.67 +1.1 2,879,638 + CCNA_02718 0.69 -1.0 2,879,646 - CCNA_02718 0.70 -1.5 2,879,647 + CCNA_02718 0.70 -0.0 2,879,658 - CCNA_02718 0.71 +0.2 2,879,677 - CCNA_02718 0.74 -1.1 2,879,722 + CCNA_02718 0.80 +2.1 2,879,731 - CCNA_02718 0.81 -0.7 2,879,746 - CCNA_02718 0.83 +1.5 2,879,773 + CCNA_02718 0.86 +1.5 2,879,773 + CCNA_02718 0.86 +1.8 2,879,774 - CCNA_02718 0.87 +0.9 2,879,781 - CCNA_02718 0.87 +0.5 2,879,782 - CCNA_02718 0.88 -0.3 2,879,788 + CCNA_02718 0.88 -0.6 2,879,791 - CCNA_02718 0.89 -0.8 2,879,816 - +0.2 2,879,880 + +0.2 2,879,888 - +0.9 2,879,889 - -0.1 2,879,895 + +0.4 2,879,895 + +0.1 2,879,895 + +0.6 2,879,900 + +0.7 2,879,903 - -0.3 2,879,903 - -1.2 2,879,919 - +0.9 2,879,961 + +0.6 2,879,961 + +0.7 2,879,961 + +1.7 2,879,961 + +0.3 2,879,961 + +1.7 2,879,966 + -1.2 2,879,966 + +2.1 2,879,969 - +0.1 2,879,969 - -0.3 2,879,969 - +1.5 2,879,969 - -0.1 2,879,987 + +1.0 2,880,011 + CCNA_02719 0.12 +0.9 2,880,028 + CCNA_02719 0.15 +1.3 2,880,028 + CCNA_02719 0.15 +1.7 2,880,028 + CCNA_02719 0.15 +2.3 2,880,029 - CCNA_02719 0.15 +0.6 2,880,036 - CCNA_02719 0.16 +0.9 2,880,062 + CCNA_02719 0.20 -0.2 2,880,079 + CCNA_02719 0.23 +1.6 2,880,086 - CCNA_02719 0.24 -0.4 2,880,094 + CCNA_02719 0.26 +0.5 2,880,121 + CCNA_02719 0.30 +0.6 2,880,134 + CCNA_02719 0.32 +1.7 2,880,147 - CCNA_02719 0.34 -1.2 2,880,152 - CCNA_02719 0.35 +0.3 2,880,158 + CCNA_02719 0.36 +1.6 2,880,193 - CCNA_02719 0.42 -0.1 2,880,240 + CCNA_02719 0.49 +0.8 2,880,248 - CCNA_02719 0.51 -1.3 2,880,249 + CCNA_02719 0.51 +1.0 2,880,249 + CCNA_02719 0.51 +0.1 2,880,277 + CCNA_02719 0.55 +1.5 2,880,281 + CCNA_02719 0.56 +1.4 2,880,287 - CCNA_02719 0.57 +1.9 2,880,289 - CCNA_02719 0.57 -0.3 2,880,312 - CCNA_02719 0.61 +0.8 2,880,329 - CCNA_02719 0.64 -0.8 2,880,357 + CCNA_02719 0.68 +3.0 2,880,362 + CCNA_02719 0.69 +0.5 2,880,365 - CCNA_02719 0.70 +0.5 2,880,377 - CCNA_02719 0.72 -0.9 2,880,403 - CCNA_02719 0.76 +1.5 2,880,416 + CCNA_02719 0.78 +1.6 2,880,432 - CCNA_02719 0.80 +0.9 2,880,437 + CCNA_02719 0.81 +1.6 2,880,449 + CCNA_02719 0.83 +1.6 2,880,457 - CCNA_02719 0.85 +0.0 2,880,458 + CCNA_02719 0.85 +1.9 2,880,495 + +1.4 2,880,503 - -0.1 2,880,514 + +1.3 2,880,522 - +0.9 2,880,528 + +0.9 2,880,575 + +1.0 2,880,595 - -0.3 2,880,599 - -1.9 2,880,614 + +0.8 2,880,622 - -0.2 2,880,622 - -0.2 2,880,647 + +1.8 2,880,653 + +1.1 2,880,653 + -0.1 2,880,653 + +1.7 2,880,653 + +1.4 2,880,653 + +0.1 2,880,653 + +0.9 2,880,653 + +1.4 2,880,653 + +1.2 2,880,653 + -0.1 2,880,653 + +1.3 2,880,653 + +1.8 2,880,653 + +0.4 2,880,653 + +0.6 2,880,653 + -0.2 2,880,661 - CCNA_02720 0.10 -1.2 2,880,661 - CCNA_02720 0.10 -0.3 2,880,661 - CCNA_02720 0.10 -0.1 2,880,661 - CCNA_02720 0.10 -0.1 2,880,661 - CCNA_02720 0.10 -0.1 2,880,661 - CCNA_02720 0.10 +0.3 2,880,661 - CCNA_02720 0.10 +0.7 2,880,661 - CCNA_02720 0.10 -1.1 2,880,661 - CCNA_02720 0.10 -0.9 2,880,661 - CCNA_02720 0.10 +1.7 2,880,661 - CCNA_02720 0.10 -0.8 2,880,661 - CCNA_02720 0.10 +0.5 2,880,663 - CCNA_02720 0.11 +0.3 2,880,663 - CCNA_02720 0.11 +0.1 2,880,663 - CCNA_02720 0.11 +0.5 2,880,668 + CCNA_02720 0.11 +1.3 2,880,669 + CCNA_02720 0.11 +1.2 2,880,676 - CCNA_02720 0.12 -0.4 2,880,689 + CCNA_02720 0.13 +2.0 2,880,697 - CCNA_02720 0.14 -0.3 2,880,697 - CCNA_02720 0.14 +0.5 2,880,723 - CCNA_02720 0.16 +3.4 2,880,734 + CCNA_02720 0.17 +1.2 2,880,737 - CCNA_02720 0.17 +0.9 2,880,740 + CCNA_02720 0.18 +0.9 2,880,742 - CCNA_02720 0.18 -1.6 2,880,746 + CCNA_02720 0.18 +1.8 2,880,765 - CCNA_02720 0.20 -0.1 2,880,781 + CCNA_02720 0.21 +3.5 2,880,781 + CCNA_02720 0.21 +2.1 2,880,791 + CCNA_02720 0.22 +0.7 2,880,823 - CCNA_02720 0.25 +0.1 2,880,865 + CCNA_02720 0.29 +1.1 2,880,883 + CCNA_02720 0.31 -0.5 2,880,895 + CCNA_02720 0.32 +0.6 2,880,920 + CCNA_02720 0.34 +0.7 2,880,923 + CCNA_02720 0.34 +0.9 2,880,965 + CCNA_02720 0.38 +0.9 2,880,973 - CCNA_02720 0.39 +1.5 2,881,004 + CCNA_02720 0.42 +1.2 2,881,004 + CCNA_02720 0.42 +1.1 2,881,004 + CCNA_02720 0.42 -0.2 2,881,012 - CCNA_02720 0.43 -2.7 2,881,039 - CCNA_02720 0.45 -0.3 2,881,046 + CCNA_02720 0.46 +1.4 2,881,048 + CCNA_02720 0.46 -0.0 2,881,048 + CCNA_02720 0.46 +1.4 2,881,048 + CCNA_02720 0.46 +1.6 2,881,056 - CCNA_02720 0.47 +0.9 2,881,056 - CCNA_02720 0.47 +1.6 2,881,063 + CCNA_02720 0.47 +0.2 2,881,063 + CCNA_02720 0.47 +1.6 2,881,063 + CCNA_02720 0.47 +1.0 2,881,071 - CCNA_02720 0.48 +0.1 2,881,083 + CCNA_02720 0.49 +1.7 2,881,083 + CCNA_02720 0.49 +1.0 2,881,083 + CCNA_02720 0.49 +0.9 2,881,128 - CCNA_02720 0.53 -1.0 2,881,169 + CCNA_02720 0.57 +0.3 2,881,169 + CCNA_02720 0.57 +2.0 2,881,169 + CCNA_02720 0.57 +2.1 2,881,169 + CCNA_02720 0.57 +0.6 2,881,169 + CCNA_02720 0.57 +0.2 2,881,169 + CCNA_02720 0.57 +0.5 2,881,177 - CCNA_02720 0.58 +0.1 2,881,187 - CCNA_02720 0.59 +1.5 2,881,197 - CCNA_02720 0.60 -0.9 2,881,226 + CCNA_02720 0.62 +0.6 2,881,226 + CCNA_02720 0.62 +0.5 2,881,231 + CCNA_02720 0.63 -1.9 2,881,239 - CCNA_02720 0.63 +1.5 2,881,243 + CCNA_02720 0.64 -0.4 2,881,255 + CCNA_02720 0.65 +0.0 2,881,374 - CCNA_02720 0.76 +0.5 2,881,431 + CCNA_02720 0.81 +2.1 2,881,459 - CCNA_02720 0.84 -1.0 2,881,474 + CCNA_02720 0.85 +0.2 2,881,474 + CCNA_02720 0.85 +0.9 2,881,474 + CCNA_02720 0.85 +0.4 2,881,483 - CCNA_02720 0.86 +0.1 2,881,492 + CCNA_02720 0.87 +0.3 2,881,492 + CCNA_02720 0.87 +1.2 2,881,497 + CCNA_02720 0.87 -0.5 2,881,497 + CCNA_02720 0.87 +1.8 2,881,500 - CCNA_02720 0.87 +0.9 2,881,505 - CCNA_02720 0.88 +0.1 2,881,505 - CCNA_02720 0.88 -2.1 2,881,507 + CCNA_02720 0.88 +0.4 2,881,528 + +0.6 2,881,547 - +0.7 2,881,554 - +0.6 2,881,569 + +1.8 2,881,591 + +0.2 2,881,591 + +1.8 2,881,631 + +2.1 2,881,631 + +0.1 2,881,631 + -0.3 2,881,631 + +2.1 2,881,631 + +1.2 2,881,631 + -1.0 2,881,647 + +2.9 2,881,690 + -1.2 2,881,700 - +0.5 2,881,719 + -0.2 2,881,724 + +0.5 2,881,735 + -0.2 2,881,743 - +1.5
Or see this region's nucleotide sequence