Experiment: PYE with benzoic 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02696 and CCNA_02697 overlap by 4 nucleotides CCNA_02697 and CCNA_02698 are separated by 9 nucleotides
CCNA_02696: CCNA_02696 - AtzE family amidohydrolase, at 2,849,672 to 2,851,066
_02696
CCNA_02697: CCNA_02697 - hypothetical protein, at 2,851,063 to 2,851,479
_02697
CCNA_02698: CCNA_02698 - Inosine-uridine nucleoside N-ribohydrolase, at 2,851,489 to 2,852,460
_02698
Position (kb)
2851
2852 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2850.079 kb on + strand, within CCNA_02696 at 2850.079 kb on + strand, within CCNA_02696 at 2850.138 kb on + strand, within CCNA_02696 at 2850.146 kb on - strand, within CCNA_02696 at 2850.287 kb on + strand, within CCNA_02696 at 2850.302 kb on - strand, within CCNA_02696 at 2850.326 kb on + strand, within CCNA_02696 at 2850.332 kb on + strand, within CCNA_02696 at 2850.332 kb on + strand, within CCNA_02696 at 2850.343 kb on + strand, within CCNA_02696 at 2850.348 kb on + strand, within CCNA_02696 at 2850.351 kb on - strand, within CCNA_02696 at 2850.363 kb on + strand, within CCNA_02696 at 2850.363 kb on + strand, within CCNA_02696 at 2850.363 kb on + strand, within CCNA_02696 at 2850.371 kb on - strand, within CCNA_02696 at 2850.378 kb on - strand, within CCNA_02696 at 2850.442 kb on + strand, within CCNA_02696 at 2850.450 kb on - strand, within CCNA_02696 at 2850.450 kb on - strand, within CCNA_02696 at 2850.460 kb on + strand, within CCNA_02696 at 2850.479 kb on - strand, within CCNA_02696 at 2850.514 kb on - strand, within CCNA_02696 at 2850.629 kb on + strand, within CCNA_02696 at 2850.637 kb on - strand, within CCNA_02696 at 2850.642 kb on - strand, within CCNA_02696 at 2850.649 kb on + strand, within CCNA_02696 at 2850.657 kb on + strand, within CCNA_02696 at 2850.665 kb on + strand, within CCNA_02696 at 2850.761 kb on + strand, within CCNA_02696 at 2850.769 kb on - strand, within CCNA_02696 at 2850.776 kb on + strand, within CCNA_02696 at 2850.779 kb on + strand, within CCNA_02696 at 2850.779 kb on + strand, within CCNA_02696 at 2850.807 kb on - strand, within CCNA_02696 at 2850.821 kb on + strand, within CCNA_02696 at 2850.854 kb on - strand, within CCNA_02696 at 2850.892 kb on + strand, within CCNA_02696 at 2850.926 kb on + strand, within CCNA_02696 at 2850.955 kb on - strand at 2850.989 kb on + strand at 2850.989 kb on + strand at 2850.989 kb on + strand at 2851.010 kb on - strand at 2851.079 kb on + strand at 2851.107 kb on + strand, within CCNA_02697 at 2851.107 kb on + strand, within CCNA_02697 at 2851.150 kb on + strand, within CCNA_02697 at 2851.150 kb on + strand, within CCNA_02697 at 2851.158 kb on - strand, within CCNA_02697 at 2851.164 kb on + strand, within CCNA_02697 at 2851.209 kb on + strand, within CCNA_02697 at 2851.209 kb on - strand, within CCNA_02697 at 2851.283 kb on + strand, within CCNA_02697 at 2851.291 kb on - strand, within CCNA_02697 at 2851.291 kb on - strand, within CCNA_02697 at 2851.299 kb on - strand, within CCNA_02697 at 2851.327 kb on + strand, within CCNA_02697 at 2851.327 kb on + strand, within CCNA_02697 at 2851.429 kb on + strand, within CCNA_02697 at 2851.473 kb on + strand at 2851.488 kb on + strand at 2851.546 kb on + strand at 2851.554 kb on - strand at 2851.574 kb on + strand at 2851.574 kb on + strand at 2851.574 kb on + strand at 2851.652 kb on - strand, within CCNA_02698 at 2851.654 kb on - strand, within CCNA_02698 at 2851.656 kb on - strand, within CCNA_02698 at 2851.678 kb on + strand, within CCNA_02698 at 2851.678 kb on + strand, within CCNA_02698 at 2851.678 kb on + strand, within CCNA_02698 at 2851.686 kb on + strand, within CCNA_02698 at 2851.688 kb on + strand, within CCNA_02698 at 2851.719 kb on + strand, within CCNA_02698 at 2851.730 kb on + strand, within CCNA_02698 at 2851.736 kb on + strand, within CCNA_02698 at 2851.738 kb on - strand, within CCNA_02698 at 2851.749 kb on - strand, within CCNA_02698 at 2851.750 kb on + strand, within CCNA_02698 at 2851.758 kb on - strand, within CCNA_02698 at 2851.758 kb on - strand, within CCNA_02698 at 2851.779 kb on + strand, within CCNA_02698 at 2851.779 kb on + strand, within CCNA_02698 at 2851.779 kb on + strand, within CCNA_02698 at 2851.779 kb on + strand, within CCNA_02698 at 2851.858 kb on - strand, within CCNA_02698 at 2851.865 kb on - strand at 2851.873 kb on + strand, within CCNA_02698 at 2851.873 kb on + strand, within CCNA_02698 at 2851.881 kb on - strand, within CCNA_02698 at 2851.882 kb on + strand, within CCNA_02698 at 2851.890 kb on - strand, within CCNA_02698 at 2851.905 kb on - strand, within CCNA_02698 at 2851.907 kb on + strand, within CCNA_02698 at 2851.916 kb on + strand, within CCNA_02698 at 2851.924 kb on + strand, within CCNA_02698 at 2851.926 kb on + strand, within CCNA_02698 at 2851.926 kb on + strand, within CCNA_02698 at 2851.934 kb on - strand, within CCNA_02698 at 2851.983 kb on + strand, within CCNA_02698 at 2851.991 kb on - strand, within CCNA_02698 at 2852.001 kb on + strand, within CCNA_02698 at 2852.051 kb on + strand, within CCNA_02698 at 2852.072 kb on + strand, within CCNA_02698 at 2852.080 kb on - strand, within CCNA_02698 at 2852.111 kb on + strand, within CCNA_02698 at 2852.184 kb on + strand, within CCNA_02698 at 2852.192 kb on - strand, within CCNA_02698 at 2852.194 kb on + strand, within CCNA_02698 at 2852.244 kb on - strand, within CCNA_02698 at 2852.272 kb on + strand, within CCNA_02698 at 2852.311 kb on + strand, within CCNA_02698 at 2852.349 kb on + strand, within CCNA_02698 at 2852.349 kb on + strand, within CCNA_02698 at 2852.349 kb on + strand, within CCNA_02698
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with benzoic 0.2 mg/ml remove 2,850,079 + CCNA_02696 0.29 +2.7 2,850,079 + CCNA_02696 0.29 +1.8 2,850,138 + CCNA_02696 0.33 +2.0 2,850,146 - CCNA_02696 0.34 +0.8 2,850,287 + CCNA_02696 0.44 +1.9 2,850,302 - CCNA_02696 0.45 -0.9 2,850,326 + CCNA_02696 0.47 +2.2 2,850,332 + CCNA_02696 0.47 +2.5 2,850,332 + CCNA_02696 0.47 +1.2 2,850,343 + CCNA_02696 0.48 +1.9 2,850,348 + CCNA_02696 0.48 +0.8 2,850,351 - CCNA_02696 0.49 +0.7 2,850,363 + CCNA_02696 0.50 +2.1 2,850,363 + CCNA_02696 0.50 +2.1 2,850,363 + CCNA_02696 0.50 +1.8 2,850,371 - CCNA_02696 0.50 +0.8 2,850,378 - CCNA_02696 0.51 +0.6 2,850,442 + CCNA_02696 0.55 +2.5 2,850,450 - CCNA_02696 0.56 +0.5 2,850,450 - CCNA_02696 0.56 -1.6 2,850,460 + CCNA_02696 0.56 +1.2 2,850,479 - CCNA_02696 0.58 -0.2 2,850,514 - CCNA_02696 0.60 +0.5 2,850,629 + CCNA_02696 0.69 +1.3 2,850,637 - CCNA_02696 0.69 +0.2 2,850,642 - CCNA_02696 0.70 +0.5 2,850,649 + CCNA_02696 0.70 +1.0 2,850,657 + CCNA_02696 0.71 +1.7 2,850,665 + CCNA_02696 0.71 +0.8 2,850,761 + CCNA_02696 0.78 +1.7 2,850,769 - CCNA_02696 0.79 +0.5 2,850,776 + CCNA_02696 0.79 +2.0 2,850,779 + CCNA_02696 0.79 +1.2 2,850,779 + CCNA_02696 0.79 +1.4 2,850,807 - CCNA_02696 0.81 -1.2 2,850,821 + CCNA_02696 0.82 +1.3 2,850,854 - CCNA_02696 0.85 +1.3 2,850,892 + CCNA_02696 0.87 +0.1 2,850,926 + CCNA_02696 0.90 +1.0 2,850,955 - -0.2 2,850,989 + +1.2 2,850,989 + +2.0 2,850,989 + +1.5 2,851,010 - +0.5 2,851,079 + +2.4 2,851,107 + CCNA_02697 0.11 +1.0 2,851,107 + CCNA_02697 0.11 +0.9 2,851,150 + CCNA_02697 0.21 +0.5 2,851,150 + CCNA_02697 0.21 +0.9 2,851,158 - CCNA_02697 0.23 -1.4 2,851,164 + CCNA_02697 0.24 +1.5 2,851,209 + CCNA_02697 0.35 -1.8 2,851,209 - CCNA_02697 0.35 +2.5 2,851,283 + CCNA_02697 0.53 -0.3 2,851,291 - CCNA_02697 0.55 +1.2 2,851,291 - CCNA_02697 0.55 +2.5 2,851,299 - CCNA_02697 0.57 -0.9 2,851,327 + CCNA_02697 0.63 +0.1 2,851,327 + CCNA_02697 0.63 +1.8 2,851,429 + CCNA_02697 0.88 +1.1 2,851,473 + +1.6 2,851,488 + +1.6 2,851,546 + -0.2 2,851,554 - -0.1 2,851,574 + +0.5 2,851,574 + +0.7 2,851,574 + +2.6 2,851,652 - CCNA_02698 0.17 +0.2 2,851,654 - CCNA_02698 0.17 +1.6 2,851,656 - CCNA_02698 0.17 +0.4 2,851,678 + CCNA_02698 0.19 +1.3 2,851,678 + CCNA_02698 0.19 +1.0 2,851,678 + CCNA_02698 0.19 +1.1 2,851,686 + CCNA_02698 0.20 +2.3 2,851,688 + CCNA_02698 0.20 +1.2 2,851,719 + CCNA_02698 0.24 +1.5 2,851,730 + CCNA_02698 0.25 +0.6 2,851,736 + CCNA_02698 0.25 +0.8 2,851,738 - CCNA_02698 0.26 +0.5 2,851,749 - CCNA_02698 0.27 -1.3 2,851,750 + CCNA_02698 0.27 +0.7 2,851,758 - CCNA_02698 0.28 +0.5 2,851,758 - CCNA_02698 0.28 +2.2 2,851,779 + CCNA_02698 0.30 +1.2 2,851,779 + CCNA_02698 0.30 +1.5 2,851,779 + CCNA_02698 0.30 +0.7 2,851,779 + CCNA_02698 0.30 +1.9 2,851,858 - CCNA_02698 0.38 -3.0 2,851,865 - +2.5 2,851,873 + CCNA_02698 0.40 +1.1 2,851,873 + CCNA_02698 0.40 +1.7 2,851,881 - CCNA_02698 0.40 -0.8 2,851,882 + CCNA_02698 0.40 +1.6 2,851,890 - CCNA_02698 0.41 +1.7 2,851,905 - CCNA_02698 0.43 -0.5 2,851,907 + CCNA_02698 0.43 +1.2 2,851,916 + CCNA_02698 0.44 +0.3 2,851,924 + CCNA_02698 0.45 +0.8 2,851,926 + CCNA_02698 0.45 +2.5 2,851,926 + CCNA_02698 0.45 +3.2 2,851,934 - CCNA_02698 0.46 -1.3 2,851,983 + CCNA_02698 0.51 +1.7 2,851,991 - CCNA_02698 0.52 -0.6 2,852,001 + CCNA_02698 0.53 +1.9 2,852,051 + CCNA_02698 0.58 +1.2 2,852,072 + CCNA_02698 0.60 +1.1 2,852,080 - CCNA_02698 0.61 -0.1 2,852,111 + CCNA_02698 0.64 +1.3 2,852,184 + CCNA_02698 0.72 +1.2 2,852,192 - CCNA_02698 0.72 +2.1 2,852,194 + CCNA_02698 0.73 +2.0 2,852,244 - CCNA_02698 0.78 +0.5 2,852,272 + CCNA_02698 0.81 +1.6 2,852,311 + CCNA_02698 0.85 +3.0 2,852,349 + CCNA_02698 0.88 +0.1 2,852,349 + CCNA_02698 0.88 +2.1 2,852,349 + CCNA_02698 0.88 +1.6
Or see this region's nucleotide sequence