Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02626

Experiment: PYE with benzoic 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02624 and CCNA_02625 are separated by 30 nucleotidesCCNA_02625 and CCNA_02626 overlap by 32 nucleotidesCCNA_02626 and CCNA_02627 are separated by 222 nucleotides CCNA_02624: CCNA_02624 - cell division protein FtsA, at 2,773,477 to 2,774,802 _02624 CCNA_02625: CCNA_02625 - cell division protein FtsQ, at 2,774,833 to 2,775,741 _02625 CCNA_02626: CCNA_02626 - D-alanine--D-alanine ligase, at 2,775,710 to 2,776,684 _02626 CCNA_02627: CCNA_02627 - aminopeptidase, at 2,776,907 to 2,778,310 _02627 Position (kb) 2775 2776 2777Strain fitness (log2 ratio) -1 0 1 2 3at 2774.860 kb on + strandat 2774.880 kb on + strandat 2775.707 kb on + strandat 2775.707 kb on + strandat 2775.707 kb on + strandat 2775.715 kb on - strandat 2776.698 kb on + strandat 2776.715 kb on - strandat 2776.745 kb on + strandat 2776.753 kb on + strandat 2776.769 kb on - strandat 2776.775 kb on - strandat 2776.780 kb on + strandat 2776.801 kb on + strandat 2776.815 kb on + strandat 2776.886 kb on + strandat 2776.886 kb on + strandat 2776.901 kb on - strandat 2776.901 kb on - strandat 2776.945 kb on + strandat 2776.968 kb on + strandat 2776.976 kb on - strandat 2776.982 kb on + strandat 2777.005 kb on - strandat 2777.006 kb on - strandat 2777.022 kb on + strandat 2777.030 kb on - strandat 2777.046 kb on + strandat 2777.054 kb on - strand, within CCNA_02627at 2777.150 kb on + strand, within CCNA_02627at 2777.160 kb on + strand, within CCNA_02627at 2777.160 kb on + strand, within CCNA_02627at 2777.168 kb on - strand, within CCNA_02627at 2777.168 kb on - strand, within CCNA_02627at 2777.168 kb on - strand, within CCNA_02627at 2777.204 kb on - strand, within CCNA_02627at 2777.241 kb on + strand, within CCNA_02627at 2777.241 kb on + strand, within CCNA_02627at 2777.275 kb on - strand, within CCNA_02627at 2777.288 kb on + strand, within CCNA_02627at 2777.294 kb on - strand, within CCNA_02627at 2777.294 kb on - strand, within CCNA_02627at 2777.322 kb on + strand, within CCNA_02627at 2777.349 kb on - strand, within CCNA_02627at 2777.359 kb on - strandat 2777.385 kb on + strandat 2777.424 kb on + strand, within CCNA_02627at 2777.467 kb on + strand, within CCNA_02627at 2777.475 kb on - strand, within CCNA_02627at 2777.475 kb on - strand, within CCNA_02627at 2777.475 kb on - strand, within CCNA_02627at 2777.477 kb on + strand, within CCNA_02627at 2777.480 kb on - strand, within CCNA_02627at 2777.485 kb on - strand, within CCNA_02627at 2777.485 kb on - strand, within CCNA_02627at 2777.485 kb on - strand, within CCNA_02627at 2777.523 kb on + strand, within CCNA_02627at 2777.523 kb on + strand, within CCNA_02627at 2777.553 kb on + strand, within CCNA_02627at 2777.571 kb on - strand, within CCNA_02627at 2777.581 kb on + strand, within CCNA_02627at 2777.582 kb on - strand, within CCNA_02627at 2777.605 kb on - strand, within CCNA_02627at 2777.630 kb on - strand, within CCNA_02627at 2777.640 kb on - strand, within CCNA_02627at 2777.669 kb on + strand, within CCNA_02627at 2777.672 kb on + strand, within CCNA_02627

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with benzoic 0.2 mg/ml
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2,774,860 + -0.9
2,774,880 + +0.4
2,775,707 + +1.4
2,775,707 + +0.8
2,775,707 + +2.4
2,775,715 - +0.5
2,776,698 + +3.2
2,776,715 - -0.4
2,776,745 + +1.2
2,776,753 + +1.1
2,776,769 - -0.2
2,776,775 - -0.6
2,776,780 + -0.5
2,776,801 + +0.3
2,776,815 + +0.2
2,776,886 + -0.8
2,776,886 + -0.6
2,776,901 - +2.4
2,776,901 - +1.3
2,776,945 + -1.2
2,776,968 + +1.4
2,776,976 - +1.9
2,776,982 + -0.1
2,777,005 - +1.1
2,777,006 - +0.7
2,777,022 + +0.4
2,777,030 - +0.1
2,777,046 + -1.3
2,777,054 - CCNA_02627 0.10 +0.1
2,777,150 + CCNA_02627 0.17 -0.4
2,777,160 + CCNA_02627 0.18 +1.4
2,777,160 + CCNA_02627 0.18 +1.8
2,777,168 - CCNA_02627 0.19 -0.2
2,777,168 - CCNA_02627 0.19 +0.5
2,777,168 - CCNA_02627 0.19 -0.2
2,777,204 - CCNA_02627 0.21 +0.1
2,777,241 + CCNA_02627 0.24 +2.4
2,777,241 + CCNA_02627 0.24 +1.4
2,777,275 - CCNA_02627 0.26 +0.8
2,777,288 + CCNA_02627 0.27 -0.4
2,777,294 - CCNA_02627 0.28 +0.1
2,777,294 - CCNA_02627 0.28 -0.2
2,777,322 + CCNA_02627 0.30 -0.2
2,777,349 - CCNA_02627 0.31 +0.6
2,777,359 - +1.4
2,777,385 + +2.4
2,777,424 + CCNA_02627 0.37 +1.1
2,777,467 + CCNA_02627 0.40 +2.4
2,777,475 - CCNA_02627 0.40 +1.8
2,777,475 - CCNA_02627 0.40 +2.3
2,777,475 - CCNA_02627 0.40 +2.2
2,777,477 + CCNA_02627 0.41 -0.3
2,777,480 - CCNA_02627 0.41 +0.8
2,777,485 - CCNA_02627 0.41 +1.8
2,777,485 - CCNA_02627 0.41 -0.6
2,777,485 - CCNA_02627 0.41 +0.5
2,777,523 + CCNA_02627 0.44 +0.8
2,777,523 + CCNA_02627 0.44 -1.2
2,777,553 + CCNA_02627 0.46 -1.2
2,777,571 - CCNA_02627 0.47 +0.1
2,777,581 + CCNA_02627 0.48 -1.7
2,777,582 - CCNA_02627 0.48 +0.1
2,777,605 - CCNA_02627 0.50 +1.6
2,777,630 - CCNA_02627 0.51 -1.6
2,777,640 - CCNA_02627 0.52 +1.2
2,777,669 + CCNA_02627 0.54 -1.3
2,777,672 + CCNA_02627 0.54 -0.4

Or see this region's nucleotide sequence