Experiment: PYE with benzoic 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02594 and CCNA_02595 are separated by 9 nucleotides CCNA_02595 and CCNA_02596 are separated by 264 nucleotides
CCNA_02594: CCNA_02594 - heat shock endopeptidase HtpX, at 2,742,178 to 2,743,128
_02594
CCNA_02595: CCNA_02595 - Zn finger TFIIB-family transcription factor, at 2,743,138 to 2,743,458
_02595
CCNA_02596: CCNA_02596 - SSU ribosomal protein S4P, at 2,743,723 to 2,744,340
_02596
Position (kb)
2743
2744 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2742.158 kb on + strand at 2742.158 kb on + strand at 2742.163 kb on + strand at 2742.166 kb on - strand at 2742.166 kb on - strand at 2742.171 kb on + strand at 2742.171 kb on + strand at 2742.179 kb on - strand at 2742.203 kb on + strand at 2742.216 kb on + strand at 2742.277 kb on + strand, within CCNA_02594 at 2742.295 kb on + strand, within CCNA_02594 at 2742.303 kb on - strand, within CCNA_02594 at 2742.314 kb on + strand, within CCNA_02594 at 2742.322 kb on - strand, within CCNA_02594 at 2742.338 kb on + strand, within CCNA_02594 at 2742.364 kb on + strand, within CCNA_02594 at 2742.372 kb on - strand, within CCNA_02594 at 2742.392 kb on + strand, within CCNA_02594 at 2742.402 kb on + strand, within CCNA_02594 at 2742.439 kb on - strand, within CCNA_02594 at 2742.448 kb on + strand, within CCNA_02594 at 2742.451 kb on - strand, within CCNA_02594 at 2742.456 kb on + strand, within CCNA_02594 at 2742.456 kb on - strand, within CCNA_02594 at 2742.489 kb on + strand, within CCNA_02594 at 2742.522 kb on - strand, within CCNA_02594 at 2742.522 kb on - strand, within CCNA_02594 at 2742.567 kb on + strand, within CCNA_02594 at 2742.586 kb on + strand, within CCNA_02594 at 2742.586 kb on + strand, within CCNA_02594 at 2742.586 kb on + strand, within CCNA_02594 at 2742.586 kb on + strand, within CCNA_02594 at 2742.591 kb on + strand, within CCNA_02594 at 2742.594 kb on - strand, within CCNA_02594 at 2742.594 kb on - strand, within CCNA_02594 at 2742.604 kb on + strand, within CCNA_02594 at 2742.660 kb on - strand, within CCNA_02594 at 2742.686 kb on + strand, within CCNA_02594 at 2742.686 kb on + strand, within CCNA_02594 at 2742.694 kb on - strand, within CCNA_02594 at 2742.694 kb on - strand, within CCNA_02594 at 2742.694 kb on - strand, within CCNA_02594 at 2742.696 kb on + strand, within CCNA_02594 at 2742.721 kb on - strand, within CCNA_02594 at 2742.726 kb on - strand, within CCNA_02594 at 2742.740 kb on + strand, within CCNA_02594 at 2742.827 kb on + strand at 2742.834 kb on - strand, within CCNA_02594 at 2742.835 kb on - strand, within CCNA_02594 at 2742.835 kb on - strand, within CCNA_02594 at 2742.835 kb on - strand, within CCNA_02594 at 2742.835 kb on - strand, within CCNA_02594 at 2742.957 kb on + strand, within CCNA_02594 at 2742.957 kb on + strand, within CCNA_02594 at 2743.019 kb on + strand, within CCNA_02594 at 2743.060 kb on - strand at 2743.073 kb on + strand at 2743.073 kb on + strand at 2743.073 kb on + strand at 2743.081 kb on - strand at 2743.081 kb on - strand at 2743.112 kb on - strand at 2743.190 kb on - strand, within CCNA_02595 at 2743.198 kb on - strand, within CCNA_02595 at 2743.216 kb on + strand, within CCNA_02595 at 2743.236 kb on + strand, within CCNA_02595 at 2743.244 kb on - strand, within CCNA_02595 at 2743.244 kb on - strand, within CCNA_02595 at 2743.244 kb on - strand, within CCNA_02595 at 2743.291 kb on - strand, within CCNA_02595 at 2743.291 kb on - strand, within CCNA_02595 at 2743.291 kb on - strand, within CCNA_02595 at 2743.291 kb on - strand, within CCNA_02595 at 2743.291 kb on - strand, within CCNA_02595 at 2743.294 kb on + strand, within CCNA_02595 at 2743.302 kb on - strand, within CCNA_02595 at 2743.349 kb on + strand, within CCNA_02595 at 2743.398 kb on + strand, within CCNA_02595 at 2743.418 kb on - strand, within CCNA_02595 at 2743.418 kb on - strand, within CCNA_02595 at 2743.443 kb on - strand at 2743.507 kb on - strand at 2743.608 kb on - strand at 2743.632 kb on - strand at 2743.648 kb on + strand at 2743.656 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with benzoic 0.2 mg/ml remove 2,742,158 + -0.5 2,742,158 + +0.1 2,742,163 + +1.8 2,742,166 - +0.6 2,742,166 - +2.0 2,742,171 + +1.4 2,742,171 + +0.5 2,742,179 - +1.2 2,742,203 + -2.5 2,742,216 + -0.5 2,742,277 + CCNA_02594 0.10 -1.0 2,742,295 + CCNA_02594 0.12 +0.1 2,742,303 - CCNA_02594 0.13 +1.8 2,742,314 + CCNA_02594 0.14 -1.2 2,742,322 - CCNA_02594 0.15 +1.7 2,742,338 + CCNA_02594 0.17 +0.5 2,742,364 + CCNA_02594 0.20 -0.7 2,742,372 - CCNA_02594 0.20 +0.9 2,742,392 + CCNA_02594 0.23 -1.1 2,742,402 + CCNA_02594 0.24 -0.4 2,742,439 - CCNA_02594 0.27 -0.1 2,742,448 + CCNA_02594 0.28 +0.1 2,742,451 - CCNA_02594 0.29 +0.2 2,742,456 + CCNA_02594 0.29 -1.2 2,742,456 - CCNA_02594 0.29 +1.4 2,742,489 + CCNA_02594 0.33 +0.1 2,742,522 - CCNA_02594 0.36 -0.1 2,742,522 - CCNA_02594 0.36 +0.6 2,742,567 + CCNA_02594 0.41 +1.5 2,742,586 + CCNA_02594 0.43 +1.5 2,742,586 + CCNA_02594 0.43 -1.4 2,742,586 + CCNA_02594 0.43 +0.4 2,742,586 + CCNA_02594 0.43 +1.1 2,742,591 + CCNA_02594 0.43 +1.1 2,742,594 - CCNA_02594 0.44 +0.6 2,742,594 - CCNA_02594 0.44 -0.0 2,742,604 + CCNA_02594 0.45 -0.6 2,742,660 - CCNA_02594 0.51 +1.3 2,742,686 + CCNA_02594 0.53 +0.4 2,742,686 + CCNA_02594 0.53 -0.3 2,742,694 - CCNA_02594 0.54 +0.8 2,742,694 - CCNA_02594 0.54 +1.8 2,742,694 - CCNA_02594 0.54 +1.1 2,742,696 + CCNA_02594 0.54 +0.5 2,742,721 - CCNA_02594 0.57 +1.8 2,742,726 - CCNA_02594 0.58 +1.4 2,742,740 + CCNA_02594 0.59 -1.1 2,742,827 + +1.5 2,742,834 - CCNA_02594 0.69 +0.8 2,742,835 - CCNA_02594 0.69 +0.0 2,742,835 - CCNA_02594 0.69 +1.8 2,742,835 - CCNA_02594 0.69 +1.2 2,742,835 - CCNA_02594 0.69 +1.6 2,742,957 + CCNA_02594 0.82 -1.0 2,742,957 + CCNA_02594 0.82 +0.5 2,743,019 + CCNA_02594 0.88 +2.5 2,743,060 - +1.5 2,743,073 + +0.9 2,743,073 + -1.9 2,743,073 + +0.1 2,743,081 - -1.3 2,743,081 - +3.1 2,743,112 - +1.5 2,743,190 - CCNA_02595 0.16 +0.7 2,743,198 - CCNA_02595 0.19 +2.5 2,743,216 + CCNA_02595 0.24 +0.1 2,743,236 + CCNA_02595 0.31 +2.5 2,743,244 - CCNA_02595 0.33 +1.7 2,743,244 - CCNA_02595 0.33 +1.3 2,743,244 - CCNA_02595 0.33 +1.7 2,743,291 - CCNA_02595 0.48 +0.3 2,743,291 - CCNA_02595 0.48 +2.3 2,743,291 - CCNA_02595 0.48 +0.9 2,743,291 - CCNA_02595 0.48 +1.6 2,743,291 - CCNA_02595 0.48 +1.0 2,743,294 + CCNA_02595 0.49 -1.3 2,743,302 - CCNA_02595 0.51 +1.6 2,743,349 + CCNA_02595 0.66 +0.6 2,743,398 + CCNA_02595 0.81 +0.4 2,743,418 - CCNA_02595 0.87 +0.5 2,743,418 - CCNA_02595 0.87 +0.9 2,743,443 - +1.9 2,743,507 - +2.7 2,743,608 - +2.9 2,743,632 - +2.9 2,743,648 + +0.1 2,743,656 - +2.6
Or see this region's nucleotide sequence