Experiment: PYE with benzoic 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_R0060 and CCNA_02465 are separated by 518 nucleotides CCNA_02465 and CCNA_02466 are separated by 51 nucleotides
CCNA_R0060: CCNA_R0060 - tRNA-Cys, at 2,607,991 to 2,608,064
_R0060
CCNA_02465: CCNA_02465 - UDP-glucose 6-dehydrogenase, at 2,608,583 to 2,609,890
_02465
CCNA_02466: CCNA_02466 - UDP-glucose 4-epimerase, at 2,609,942 to 2,610,925
_02466
Position (kb)
2608
2609
2610 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 2607.590 kb on - strand at 2607.615 kb on + strand at 2607.615 kb on + strand at 2607.623 kb on - strand at 2607.623 kb on - strand at 2607.634 kb on + strand at 2607.634 kb on + strand at 2607.635 kb on + strand at 2607.635 kb on + strand at 2607.642 kb on - strand at 2607.642 kb on - strand at 2607.642 kb on - strand at 2607.642 kb on - strand at 2607.642 kb on - strand at 2607.642 kb on - strand at 2607.643 kb on - strand at 2607.643 kb on - strand at 2607.676 kb on - strand at 2607.709 kb on + strand at 2607.725 kb on - strand at 2607.725 kb on - strand at 2607.753 kb on - strand at 2607.808 kb on - strand at 2607.818 kb on + strand at 2607.826 kb on + strand at 2607.890 kb on - strand at 2607.890 kb on - strand at 2607.890 kb on - strand at 2607.927 kb on - strand at 2608.078 kb on + strand at 2608.146 kb on + strand at 2608.171 kb on - strand at 2608.236 kb on + strand at 2608.334 kb on + strand at 2608.334 kb on + strand at 2608.334 kb on - strand at 2608.334 kb on - strand at 2608.352 kb on - strand at 2608.356 kb on + strand at 2608.364 kb on - strand at 2608.379 kb on - strand at 2608.408 kb on + strand at 2608.411 kb on - strand at 2608.411 kb on - strand at 2608.427 kb on + strand at 2608.435 kb on - strand at 2608.448 kb on - strand at 2608.510 kb on + strand at 2608.518 kb on - strand at 2608.518 kb on - strand at 2608.552 kb on + strand at 2608.557 kb on + strand at 2608.565 kb on - strand at 2608.609 kb on - strand at 2608.633 kb on - strand at 2608.637 kb on + strand at 2608.637 kb on + strand at 2608.643 kb on - strand at 2608.643 kb on - strand at 2608.645 kb on - strand at 2608.652 kb on - strand at 2608.663 kb on - strand at 2608.679 kb on - strand at 2608.679 kb on - strand at 2608.679 kb on - strand at 2608.679 kb on - strand at 2608.691 kb on - strand at 2608.691 kb on - strand at 2608.691 kb on - strand at 2608.691 kb on - strand at 2608.701 kb on - strand at 2608.701 kb on - strand at 2608.957 kb on + strand, within CCNA_02465 at 2608.957 kb on + strand, within CCNA_02465 at 2609.055 kb on + strand, within CCNA_02465 at 2609.070 kb on + strand, within CCNA_02465 at 2609.070 kb on + strand, within CCNA_02465 at 2609.070 kb on + strand, within CCNA_02465 at 2609.070 kb on + strand, within CCNA_02465 at 2609.070 kb on + strand, within CCNA_02465 at 2609.070 kb on + strand, within CCNA_02465 at 2609.070 kb on + strand, within CCNA_02465 at 2609.070 kb on + strand, within CCNA_02465 at 2609.070 kb on + strand, within CCNA_02465 at 2609.070 kb on + strand, within CCNA_02465 at 2609.070 kb on + strand, within CCNA_02465 at 2609.080 kb on + strand, within CCNA_02465 at 2609.080 kb on + strand, within CCNA_02465 at 2609.112 kb on + strand, within CCNA_02465 at 2609.117 kb on + strand, within CCNA_02465 at 2609.177 kb on - strand, within CCNA_02465 at 2609.183 kb on + strand, within CCNA_02465 at 2609.327 kb on + strand, within CCNA_02465 at 2609.376 kb on + strand, within CCNA_02465 at 2609.454 kb on + strand, within CCNA_02465 at 2609.481 kb on + strand, within CCNA_02465 at 2609.481 kb on + strand, within CCNA_02465 at 2609.487 kb on - strand, within CCNA_02465 at 2609.489 kb on - strand, within CCNA_02465 at 2609.493 kb on + strand, within CCNA_02465 at 2609.899 kb on + strand at 2609.942 kb on - strand at 2609.958 kb on + strand at 2609.966 kb on - strand at 2610.023 kb on + strand at 2610.042 kb on + strand, within CCNA_02466 at 2610.045 kb on + strand, within CCNA_02466 at 2610.048 kb on - strand, within CCNA_02466 at 2610.051 kb on - strand, within CCNA_02466 at 2610.091 kb on - strand, within CCNA_02466 at 2610.094 kb on + strand, within CCNA_02466 at 2610.100 kb on - strand, within CCNA_02466 at 2610.101 kb on - strand, within CCNA_02466 at 2610.110 kb on - strand, within CCNA_02466 at 2610.151 kb on + strand, within CCNA_02466 at 2610.151 kb on + strand, within CCNA_02466 at 2610.217 kb on + strand, within CCNA_02466 at 2610.219 kb on + strand, within CCNA_02466 at 2610.227 kb on - strand, within CCNA_02466 at 2610.227 kb on - strand, within CCNA_02466 at 2610.261 kb on - strand, within CCNA_02466 at 2610.268 kb on - strand, within CCNA_02466 at 2610.281 kb on - strand, within CCNA_02466 at 2610.281 kb on - strand, within CCNA_02466 at 2610.288 kb on + strand, within CCNA_02466 at 2610.352 kb on + strand, within CCNA_02466 at 2610.371 kb on - strand, within CCNA_02466 at 2610.372 kb on - strand, within CCNA_02466 at 2610.423 kb on - strand, within CCNA_02466 at 2610.448 kb on - strand, within CCNA_02466 at 2610.472 kb on + strand, within CCNA_02466 at 2610.472 kb on + strand, within CCNA_02466 at 2610.483 kb on + strand, within CCNA_02466 at 2610.483 kb on + strand, within CCNA_02466 at 2610.509 kb on + strand, within CCNA_02466 at 2610.530 kb on + strand, within CCNA_02466 at 2610.596 kb on + strand, within CCNA_02466 at 2610.604 kb on - strand, within CCNA_02466 at 2610.619 kb on - strand, within CCNA_02466 at 2610.628 kb on + strand, within CCNA_02466 at 2610.745 kb on - strand, within CCNA_02466 at 2610.755 kb on - strand, within CCNA_02466 at 2610.781 kb on + strand, within CCNA_02466 at 2610.789 kb on - strand, within CCNA_02466 at 2610.824 kb on - strand, within CCNA_02466 at 2610.824 kb on - strand, within CCNA_02466 at 2610.838 kb on - strand at 2610.838 kb on - strand at 2610.868 kb on - strand at 2610.873 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with benzoic 0.2 mg/ml remove 2,607,590 - +0.1 2,607,615 + -0.9 2,607,615 + +0.6 2,607,623 - +0.8 2,607,623 - -2.5 2,607,634 + +1.6 2,607,634 + -0.5 2,607,635 + +3.0 2,607,635 + +3.1 2,607,642 - -1.0 2,607,642 - +0.8 2,607,642 - -0.7 2,607,642 - +2.4 2,607,642 - -0.1 2,607,642 - +2.4 2,607,643 - -0.4 2,607,643 - -0.9 2,607,676 - -2.4 2,607,709 + +2.4 2,607,725 - -0.4 2,607,725 - -0.2 2,607,753 - -0.9 2,607,808 - -0.2 2,607,818 + -0.7 2,607,826 + +0.8 2,607,890 - +0.8 2,607,890 - +0.4 2,607,890 - +0.6 2,607,927 - -0.9 2,608,078 + +3.3 2,608,146 + +0.5 2,608,171 - -2.6 2,608,236 + +1.3 2,608,334 + +2.4 2,608,334 + -0.5 2,608,334 - -1.1 2,608,334 - +2.9 2,608,352 - -0.6 2,608,356 + -0.4 2,608,364 - +2.2 2,608,379 - +0.6 2,608,408 + +1.0 2,608,411 - +3.4 2,608,411 - +1.1 2,608,427 + +0.4 2,608,435 - +0.4 2,608,448 - +0.3 2,608,510 + -0.6 2,608,518 - -0.7 2,608,518 - -1.7 2,608,552 + -0.1 2,608,557 + -2.3 2,608,565 - +0.1 2,608,609 - -1.0 2,608,633 - -1.3 2,608,637 + +2.4 2,608,637 + -0.4 2,608,643 - +0.4 2,608,643 - -0.0 2,608,645 - +0.6 2,608,652 - +1.9 2,608,663 - +0.2 2,608,679 - +2.2 2,608,679 - +1.3 2,608,679 - +1.6 2,608,679 - +2.2 2,608,691 - +1.5 2,608,691 - +0.4 2,608,691 - -1.0 2,608,691 - +3.4 2,608,701 - -0.4 2,608,701 - +0.3 2,608,957 + CCNA_02465 0.29 +0.0 2,608,957 + CCNA_02465 0.29 +0.9 2,609,055 + CCNA_02465 0.36 -0.4 2,609,070 + CCNA_02465 0.37 -1.6 2,609,070 + CCNA_02465 0.37 +0.3 2,609,070 + CCNA_02465 0.37 +0.2 2,609,070 + CCNA_02465 0.37 +0.4 2,609,070 + CCNA_02465 0.37 +0.1 2,609,070 + CCNA_02465 0.37 -1.0 2,609,070 + CCNA_02465 0.37 -0.9 2,609,070 + CCNA_02465 0.37 -0.4 2,609,070 + CCNA_02465 0.37 +1.9 2,609,070 + CCNA_02465 0.37 +1.4 2,609,070 + CCNA_02465 0.37 +0.1 2,609,080 + CCNA_02465 0.38 +3.6 2,609,080 + CCNA_02465 0.38 +3.3 2,609,112 + CCNA_02465 0.40 +1.4 2,609,117 + CCNA_02465 0.41 -1.4 2,609,177 - CCNA_02465 0.45 +0.1 2,609,183 + CCNA_02465 0.46 -1.0 2,609,327 + CCNA_02465 0.57 +0.4 2,609,376 + CCNA_02465 0.61 +1.0 2,609,454 + CCNA_02465 0.67 +5.2 2,609,481 + CCNA_02465 0.69 +0.4 2,609,481 + CCNA_02465 0.69 +0.1 2,609,487 - CCNA_02465 0.69 +0.4 2,609,489 - CCNA_02465 0.69 +2.9 2,609,493 + CCNA_02465 0.70 -0.7 2,609,899 + -1.0 2,609,942 - +0.9 2,609,958 + -1.3 2,609,966 - -1.6 2,610,023 + +1.4 2,610,042 + CCNA_02466 0.10 +0.9 2,610,045 + CCNA_02466 0.10 -0.6 2,610,048 - CCNA_02466 0.11 +1.4 2,610,051 - CCNA_02466 0.11 -1.6 2,610,091 - CCNA_02466 0.15 -1.1 2,610,094 + CCNA_02466 0.15 -0.7 2,610,100 - CCNA_02466 0.16 -0.6 2,610,101 - CCNA_02466 0.16 +0.1 2,610,110 - CCNA_02466 0.17 +0.1 2,610,151 + CCNA_02466 0.21 +3.0 2,610,151 + CCNA_02466 0.21 +2.4 2,610,217 + CCNA_02466 0.28 +0.6 2,610,219 + CCNA_02466 0.28 +1.4 2,610,227 - CCNA_02466 0.29 -1.1 2,610,227 - CCNA_02466 0.29 -0.3 2,610,261 - CCNA_02466 0.32 -2.4 2,610,268 - CCNA_02466 0.33 +0.3 2,610,281 - CCNA_02466 0.34 +1.6 2,610,281 - CCNA_02466 0.34 +1.3 2,610,288 + CCNA_02466 0.35 +2.4 2,610,352 + CCNA_02466 0.42 +0.9 2,610,371 - CCNA_02466 0.44 +1.4 2,610,372 - CCNA_02466 0.44 -1.5 2,610,423 - CCNA_02466 0.49 -1.0 2,610,448 - CCNA_02466 0.51 +0.7 2,610,472 + CCNA_02466 0.54 +0.4 2,610,472 + CCNA_02466 0.54 +2.0 2,610,483 + CCNA_02466 0.55 +0.9 2,610,483 + CCNA_02466 0.55 +1.4 2,610,509 + CCNA_02466 0.58 +0.1 2,610,530 + CCNA_02466 0.60 -0.7 2,610,596 + CCNA_02466 0.66 +0.5 2,610,604 - CCNA_02466 0.67 -0.4 2,610,619 - CCNA_02466 0.69 -0.6 2,610,628 + CCNA_02466 0.70 +2.4 2,610,745 - CCNA_02466 0.82 +1.4 2,610,755 - CCNA_02466 0.83 -0.4 2,610,781 + CCNA_02466 0.85 -0.4 2,610,789 - CCNA_02466 0.86 +0.0 2,610,824 - CCNA_02466 0.90 -1.0 2,610,824 - CCNA_02466 0.90 -1.5 2,610,838 - -2.6 2,610,838 - +0.3 2,610,868 - +0.7 2,610,873 - -1.0
Or see this region's nucleotide sequence