Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02436

Experiment: PYE with benzoic 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02435 and CCNA_02436 are separated by 97 nucleotidesCCNA_02436 and CCNA_R0059 are separated by 90 nucleotidesCCNA_R0059 and CCNA_02437 are separated by 114 nucleotides CCNA_02435: CCNA_02435 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 2,575,695 to 2,576,984 _02435 CCNA_02436: CCNA_02436 - hypothetical protein, at 2,577,082 to 2,577,531 _02436 CCNA_R0059: CCNA_R0059 - tRNA-Thr, at 2,577,622 to 2,577,696 _R0059 CCNA_02437: CCNA_02437 - LysR-family transcriptional regulator, at 2,577,811 to 2,578,719 _02437 Position (kb) 2577 2578Strain fitness (log2 ratio) -1 0 1 2 3at 2577.031 kb on - strandat 2577.031 kb on - strandat 2577.031 kb on - strandat 2577.031 kb on - strandat 2577.036 kb on - strandat 2577.036 kb on - strandat 2577.041 kb on + strandat 2577.080 kb on - strandat 2577.088 kb on - strandat 2577.099 kb on + strandat 2577.114 kb on + strandat 2577.119 kb on + strandat 2577.119 kb on + strandat 2577.119 kb on + strandat 2577.119 kb on + strandat 2577.119 kb on + strandat 2577.122 kb on - strandat 2577.127 kb on - strand, within CCNA_02436at 2577.127 kb on - strand, within CCNA_02436at 2577.127 kb on - strand, within CCNA_02436at 2577.127 kb on - strand, within CCNA_02436at 2577.127 kb on - strand, within CCNA_02436at 2577.127 kb on - strand, within CCNA_02436at 2577.127 kb on - strand, within CCNA_02436at 2577.129 kb on + strand, within CCNA_02436at 2577.132 kb on - strand, within CCNA_02436at 2577.140 kb on + strand, within CCNA_02436at 2577.179 kb on + strand, within CCNA_02436at 2577.192 kb on + strand, within CCNA_02436at 2577.192 kb on + strand, within CCNA_02436at 2577.192 kb on - strand, within CCNA_02436at 2577.192 kb on - strand, within CCNA_02436at 2577.233 kb on + strand, within CCNA_02436at 2577.236 kb on - strand, within CCNA_02436at 2577.273 kb on + strand, within CCNA_02436at 2577.276 kb on + strand, within CCNA_02436at 2577.342 kb on - strand, within CCNA_02436at 2577.460 kb on - strand, within CCNA_02436at 2577.463 kb on + strand, within CCNA_02436at 2577.481 kb on - strand, within CCNA_02436at 2577.509 kb on + strandat 2577.541 kb on - strandat 2577.571 kb on + strandat 2577.720 kb on + strandat 2577.730 kb on + strandat 2577.839 kb on - strandat 2577.853 kb on - strandat 2577.876 kb on + strandat 2577.878 kb on - strandat 2577.884 kb on - strandat 2577.890 kb on - strandat 2577.946 kb on - strand, within CCNA_02437at 2577.984 kb on - strand, within CCNA_02437at 2577.989 kb on + strand, within CCNA_02437at 2577.989 kb on - strand, within CCNA_02437at 2577.991 kb on + strand, within CCNA_02437at 2577.994 kb on - strand, within CCNA_02437at 2577.999 kb on - strand, within CCNA_02437at 2577.999 kb on - strand, within CCNA_02437at 2577.999 kb on - strandat 2578.008 kb on - strand, within CCNA_02437at 2578.027 kb on + strand, within CCNA_02437at 2578.099 kb on - strand, within CCNA_02437at 2578.105 kb on + strand, within CCNA_02437at 2578.113 kb on - strand, within CCNA_02437at 2578.113 kb on - strand, within CCNA_02437at 2578.155 kb on + strand, within CCNA_02437at 2578.163 kb on + strand, within CCNA_02437at 2578.163 kb on - strand, within CCNA_02437at 2578.191 kb on + strand, within CCNA_02437at 2578.199 kb on - strand, within CCNA_02437at 2578.215 kb on - strand, within CCNA_02437at 2578.215 kb on - strand, within CCNA_02437at 2578.221 kb on - strand, within CCNA_02437at 2578.244 kb on + strand, within CCNA_02437at 2578.250 kb on + strand, within CCNA_02437at 2578.252 kb on - strand, within CCNA_02437at 2578.255 kb on + strand, within CCNA_02437at 2578.273 kb on - strand, within CCNA_02437at 2578.336 kb on + strand, within CCNA_02437at 2578.336 kb on + strand, within CCNA_02437at 2578.341 kb on + strand, within CCNA_02437at 2578.344 kb on - strand, within CCNA_02437at 2578.349 kb on - strand, within CCNA_02437at 2578.349 kb on - strand, within CCNA_02437at 2578.360 kb on - strand, within CCNA_02437at 2578.362 kb on + strand, within CCNA_02437at 2578.370 kb on - strand, within CCNA_02437at 2578.392 kb on - strand, within CCNA_02437at 2578.402 kb on - strand, within CCNA_02437at 2578.404 kb on + strand, within CCNA_02437at 2578.437 kb on - strand, within CCNA_02437at 2578.444 kb on - strand, within CCNA_02437at 2578.472 kb on - strand, within CCNA_02437at 2578.472 kb on - strand, within CCNA_02437at 2578.472 kb on - strand, within CCNA_02437at 2578.472 kb on - strand, within CCNA_02437at 2578.499 kb on + strand, within CCNA_02437at 2578.507 kb on - strand, within CCNA_02437at 2578.517 kb on - strand, within CCNA_02437at 2578.530 kb on + strand, within CCNA_02437at 2578.530 kb on + strand, within CCNA_02437

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with benzoic 0.2 mg/ml
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2,577,031 - +3.1
2,577,031 - +1.5
2,577,031 - +2.1
2,577,031 - +0.5
2,577,036 - +1.6
2,577,036 - +0.4
2,577,041 + -1.6
2,577,080 - -0.9
2,577,088 - +0.5
2,577,099 + +2.5
2,577,114 + +0.1
2,577,119 + -1.4
2,577,119 + +0.9
2,577,119 + +0.5
2,577,119 + -0.7
2,577,119 + +2.5
2,577,122 - +0.8
2,577,127 - CCNA_02436 0.10 -0.1
2,577,127 - CCNA_02436 0.10 -0.7
2,577,127 - CCNA_02436 0.10 +0.1
2,577,127 - CCNA_02436 0.10 +1.5
2,577,127 - CCNA_02436 0.10 +0.3
2,577,127 - CCNA_02436 0.10 +0.5
2,577,127 - CCNA_02436 0.10 +0.1
2,577,129 + CCNA_02436 0.10 -0.1
2,577,132 - CCNA_02436 0.11 +0.1
2,577,140 + CCNA_02436 0.13 +0.5
2,577,179 + CCNA_02436 0.22 -0.4
2,577,192 + CCNA_02436 0.24 +1.5
2,577,192 + CCNA_02436 0.24 +0.2
2,577,192 - CCNA_02436 0.24 +2.0
2,577,192 - CCNA_02436 0.24 +1.3
2,577,233 + CCNA_02436 0.34 +1.5
2,577,236 - CCNA_02436 0.34 +0.9
2,577,273 + CCNA_02436 0.42 +0.5
2,577,276 + CCNA_02436 0.43 +0.1
2,577,342 - CCNA_02436 0.58 -0.4
2,577,460 - CCNA_02436 0.84 -0.5
2,577,463 + CCNA_02436 0.85 +2.5
2,577,481 - CCNA_02436 0.89 -1.2
2,577,509 + +1.1
2,577,541 - +0.7
2,577,571 + -1.1
2,577,720 + +2.8
2,577,730 + +3.2
2,577,839 - +2.1
2,577,853 - -0.3
2,577,876 + +0.1
2,577,878 - +0.1
2,577,884 - +0.9
2,577,890 - +2.5
2,577,946 - CCNA_02437 0.15 +0.9
2,577,984 - CCNA_02437 0.19 +1.2
2,577,989 + CCNA_02437 0.20 -0.1
2,577,989 - CCNA_02437 0.20 +1.2
2,577,991 + CCNA_02437 0.20 +1.5
2,577,994 - CCNA_02437 0.20 -0.2
2,577,999 - CCNA_02437 0.21 +1.4
2,577,999 - CCNA_02437 0.21 +0.7
2,577,999 - -0.5
2,578,008 - CCNA_02437 0.22 +1.2
2,578,027 + CCNA_02437 0.24 -1.6
2,578,099 - CCNA_02437 0.32 +0.5
2,578,105 + CCNA_02437 0.32 +0.5
2,578,113 - CCNA_02437 0.33 +1.5
2,578,113 - CCNA_02437 0.33 +1.0
2,578,155 + CCNA_02437 0.38 +0.1
2,578,163 + CCNA_02437 0.39 -1.0
2,578,163 - CCNA_02437 0.39 +0.5
2,578,191 + CCNA_02437 0.42 -0.3
2,578,199 - CCNA_02437 0.43 +0.6
2,578,215 - CCNA_02437 0.44 +0.5
2,578,215 - CCNA_02437 0.44 +1.5
2,578,221 - CCNA_02437 0.45 +0.7
2,578,244 + CCNA_02437 0.48 -0.3
2,578,250 + CCNA_02437 0.48 -0.9
2,578,252 - CCNA_02437 0.49 -0.7
2,578,255 + CCNA_02437 0.49 -0.9
2,578,273 - CCNA_02437 0.51 +1.3
2,578,336 + CCNA_02437 0.58 +0.1
2,578,336 + CCNA_02437 0.58 -0.1
2,578,341 + CCNA_02437 0.58 +1.5
2,578,344 - CCNA_02437 0.59 +1.5
2,578,349 - CCNA_02437 0.59 -0.1
2,578,349 - CCNA_02437 0.59 +0.9
2,578,360 - CCNA_02437 0.60 -0.3
2,578,362 + CCNA_02437 0.61 -0.3
2,578,370 - CCNA_02437 0.61 -0.1
2,578,392 - CCNA_02437 0.64 +0.9
2,578,402 - CCNA_02437 0.65 +0.9
2,578,404 + CCNA_02437 0.65 +2.2
2,578,437 - CCNA_02437 0.69 -0.3
2,578,444 - CCNA_02437 0.70 +1.3
2,578,472 - CCNA_02437 0.73 +0.6
2,578,472 - CCNA_02437 0.73 +3.2
2,578,472 - CCNA_02437 0.73 +2.1
2,578,472 - CCNA_02437 0.73 -0.2
2,578,499 + CCNA_02437 0.76 +1.5
2,578,507 - CCNA_02437 0.77 +0.1
2,578,517 - CCNA_02437 0.78 +1.6
2,578,530 + CCNA_02437 0.79 -0.1
2,578,530 + CCNA_02437 0.79 -1.5

Or see this region's nucleotide sequence