Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02031

Experiment: PYE with benzoic 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02029 and CCNA_02030 are separated by 2 nucleotidesCCNA_02030 and CCNA_02031 are separated by 21 nucleotidesCCNA_02031 and CCNA_02032 overlap by 4 nucleotidesCCNA_02032 and CCNA_02033 overlap by 31 nucleotides CCNA_02029: CCNA_02029 - NADH-quinone oxidoreductase chain D, at 2,174,263 to 2,175,513 _02029 CCNA_02030: CCNA_02030 - hypothetical protein, at 2,175,516 to 2,175,911 _02030 CCNA_02031: CCNA_02031 - NADH-quinone oxidoreductase chain C, at 2,175,933 to 2,176,526 _02031 CCNA_02032: CCNA_02032 - NADH-quinone oxidoreductase chain B, at 2,176,523 to 2,177,125 _02032 CCNA_02033: CCNA_02033 - NADH-quinone oxidoreductase chain A, at 2,177,095 to 2,177,472 _02033 Position (kb) 2175 2176 2177Strain fitness (log2 ratio) -1 0 1 2 3 4at 2175.678 kb on - strand, within CCNA_02030at 2175.782 kb on - strand, within CCNA_02030at 2175.810 kb on - strand, within CCNA_02030at 2175.914 kb on - strandat 2175.941 kb on - strandat 2177.475 kb on - strandat 2177.498 kb on + strandat 2177.498 kb on + strandat 2177.506 kb on - strandat 2177.506 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with benzoic 0.2 mg/ml
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2,175,678 - CCNA_02030 0.41 +3.8
2,175,782 - CCNA_02030 0.67 +4.6
2,175,810 - CCNA_02030 0.74 +4.0
2,175,914 - +4.1
2,175,941 - +3.5
2,177,475 - +2.8
2,177,498 + -0.2
2,177,498 + -0.6
2,177,506 - +3.2
2,177,506 - +2.9

Or see this region's nucleotide sequence