Experiment: PYE with benzoic 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01738 and CCNA_01739 are separated by 204 nucleotides CCNA_01739 and CCNA_01740 are separated by 13 nucleotides CCNA_01740 and CCNA_01741 are separated by 14 nucleotides CCNA_01741 and CCNA_01742 are separated by 268 nucleotides
CCNA_01738: CCNA_01738 - TonB-dependent outer membrane receptor, at 1,866,634 to 1,869,063
_01738
CCNA_01739: CCNA_01739 - LSU ribosomal protein L9P, at 1,869,268 to 1,869,852
_01739
CCNA_01740: CCNA_01740 - SSU ribosomal protein S18P, at 1,869,866 to 1,870,144
_01740
CCNA_01741: CCNA_01741 - SSU ribosomal protein S6P, at 1,870,159 to 1,870,539
_01741
CCNA_01742: CCNA_01742 - hypothetical protein, at 1,870,808 to 1,871,467
_01742
Position (kb)
1869
1870
1871 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 1868.903 kb on - strand at 1868.905 kb on + strand at 1868.920 kb on - strand at 1868.922 kb on - strand at 1868.979 kb on - strand at 1869.012 kb on - strand at 1869.025 kb on - strand at 1869.050 kb on + strand at 1869.058 kb on - strand at 1869.273 kb on - strand at 1869.273 kb on - strand at 1869.273 kb on - strand at 1869.273 kb on - strand at 1869.327 kb on - strand, within CCNA_01739 at 1869.431 kb on - strand, within CCNA_01739 at 1869.431 kb on - strand, within CCNA_01739 at 1869.432 kb on - strand, within CCNA_01739 at 1869.454 kb on - strand, within CCNA_01739 at 1869.487 kb on - strand, within CCNA_01739 at 1869.632 kb on - strand, within CCNA_01739 at 1869.642 kb on - strand, within CCNA_01739 at 1869.642 kb on - strand, within CCNA_01739 at 1869.642 kb on - strand, within CCNA_01739 at 1869.747 kb on - strand, within CCNA_01739 at 1869.752 kb on - strand, within CCNA_01739 at 1869.884 kb on - strand at 1870.778 kb on + strand at 1870.778 kb on + strand at 1870.786 kb on - strand at 1870.786 kb on - strand at 1870.818 kb on + strand at 1870.826 kb on - strand at 1870.870 kb on + strand at 1870.870 kb on + strand at 1870.946 kb on + strand, within CCNA_01742 at 1870.946 kb on + strand, within CCNA_01742 at 1870.954 kb on - strand, within CCNA_01742 at 1870.954 kb on - strand, within CCNA_01742 at 1871.046 kb on - strand, within CCNA_01742 at 1871.050 kb on + strand, within CCNA_01742 at 1871.064 kb on + strand, within CCNA_01742 at 1871.079 kb on + strand, within CCNA_01742 at 1871.087 kb on - strand, within CCNA_01742 at 1871.087 kb on - strand, within CCNA_01742 at 1871.141 kb on - strand, within CCNA_01742
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with benzoic 0.2 mg/ml remove 1,868,903 - -0.2 1,868,905 + +0.5 1,868,920 - +0.6 1,868,922 - +1.6 1,868,979 - +1.4 1,869,012 - +1.1 1,869,025 - +0.2 1,869,050 + +2.1 1,869,058 - -0.3 1,869,273 - +3.6 1,869,273 - +4.0 1,869,273 - +3.6 1,869,273 - +3.2 1,869,327 - CCNA_01739 0.10 +3.4 1,869,431 - CCNA_01739 0.28 +2.7 1,869,431 - CCNA_01739 0.28 +3.1 1,869,432 - CCNA_01739 0.28 +1.9 1,869,454 - CCNA_01739 0.32 +2.3 1,869,487 - CCNA_01739 0.37 +3.1 1,869,632 - CCNA_01739 0.62 +2.1 1,869,642 - CCNA_01739 0.64 +3.0 1,869,642 - CCNA_01739 0.64 +2.6 1,869,642 - CCNA_01739 0.64 +2.8 1,869,747 - CCNA_01739 0.82 +2.9 1,869,752 - CCNA_01739 0.83 +3.7 1,869,884 - +2.9 1,870,778 + -0.3 1,870,778 + +0.7 1,870,786 - -1.2 1,870,786 - +1.7 1,870,818 + +1.7 1,870,826 - -0.8 1,870,870 + +0.5 1,870,870 + +2.5 1,870,946 + CCNA_01742 0.21 +2.7 1,870,946 + CCNA_01742 0.21 +2.2 1,870,954 - CCNA_01742 0.22 +0.7 1,870,954 - CCNA_01742 0.22 +0.4 1,871,046 - CCNA_01742 0.36 +1.7 1,871,050 + CCNA_01742 0.37 +2.3 1,871,064 + CCNA_01742 0.39 +2.5 1,871,079 + CCNA_01742 0.41 +2.6 1,871,087 - CCNA_01742 0.42 +0.4 1,871,087 - CCNA_01742 0.42 +1.1 1,871,141 - CCNA_01742 0.50 +2.7
Or see this region's nucleotide sequence