Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01341

Experiment: PYE with benzoic 0.2 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with benzoic 0.2 mg/ml
1,453,478	+		CCNA_01340	0.33	+0.0
1,453,498	-		CCNA_01340	0.34	+0.2
1,453,505	-		CCNA_01340	0.35	-0.2
1,453,505	-		CCNA_01340	0.35	+2.4
1,453,514	+		CCNA_01340	0.35	-0.3
1,453,594	+		CCNA_01340	0.42	+1.2
1,453,597	-		CCNA_01340	0.42	+0.8
1,453,599	+		CCNA_01340	0.42	-0.6
1,453,599	+		CCNA_01340	0.42	+1.0
1,453,599	+		CCNA_01340	0.42	+1.0
1,453,599	+		CCNA_01340	0.42	+0.9
1,453,599	+		CCNA_01340	0.42	-0.6
1,453,599	+		CCNA_01340	0.42	-1.1
1,453,599	+		CCNA_01340	0.42	+1.4
1,453,599	+		CCNA_01340	0.42	-1.3
1,453,599	+		CCNA_01340	0.42	-0.2
1,453,602	-		CCNA_01340	0.42	-0.6
1,453,607	-		CCNA_01340	0.43	-0.6
1,453,607	-		CCNA_01340	0.43	-0.6
1,453,685	+		CCNA_01340	0.49	-0.4
1,453,690	+		CCNA_01340	0.49	+1.6
1,453,803	+		CCNA_01340	0.59	+0.2
1,453,803	+		CCNA_01340	0.59	-0.0
1,453,808	+		CCNA_01340	0.59	+0.4
1,453,823	-		CCNA_01340	0.60	-0.8
1,453,835	-		CCNA_01340	0.61	-0.4
1,453,835	-		CCNA_01340	0.61	-0.2
1,453,855	+		CCNA_01340	0.63	-1.1
1,453,857	-		CCNA_01340	0.63	-1.2
1,453,906	+		CCNA_01340	0.67	+0.4
1,453,914	-		CCNA_01340	0.67	+1.1
1,453,941	+		CCNA_01340	0.70	+1.4
1,453,980	+		CCNA_01340	0.73	-0.1
1,454,017	-		CCNA_01340	0.76	+0.8
1,454,052	-		CCNA_01340	0.78	+0.4
1,454,061	-		CCNA_01340	0.79	-1.0
1,454,079	+		CCNA_01340	0.81	+0.9
1,454,205	+				+2.8
1,454,213	-				-1.2
1,454,244	+				-1.5
1,454,244	+				-2.9
1,454,244	+				+0.6
1,454,252	-				-0.2
1,454,273	-				-0.2
1,454,282	+				+1.1
1,454,290	-				-2.0
1,454,290	-				-1.2
1,454,293	+				+1.8
1,454,324	+				+3.3
1,454,343	-				+0.8
1,454,357	+				+0.5
1,454,357	+				-0.3
1,454,358	+				-0.6
1,454,358	+				+0.4
1,454,358	+				-0.4
1,454,358	+				-0.4
1,454,358	+				+0.4
1,454,358	+				-0.3
1,454,358	+				+0.4
1,454,366	-				-0.6
1,454,366	-				+2.4
1,454,377	-				-0.8
1,454,377	-				-0.4
1,454,394	-				-0.4
1,454,469	-				-0.8
1,454,472	+				+2.0
1,454,472	+				+1.0
1,454,477	+				+1.4
1,454,526	-				+1.4
1,454,625	+		CCNA_01341	0.15	-0.1
1,454,630	+		CCNA_01341	0.15	+1.2
1,454,650	+		CCNA_01341	0.17	+0.3
1,454,690	+		CCNA_01341	0.19	+1.0
1,454,722	+		CCNA_01341	0.22	+1.5
1,454,753	-		CCNA_01341	0.24	-1.5
1,454,755	+		CCNA_01341	0.24	-0.5
1,454,836	+		CCNA_01341	0.30	+3.5
1,454,844	-		CCNA_01341	0.30	-1.1
1,454,890	+		CCNA_01341	0.34	+1.7
1,454,956	+		CCNA_01341	0.38	+1.0
1,454,961	+		CCNA_01341	0.39	+3.0
1,454,966	+		CCNA_01341	0.39	+2.0
1,454,966	+		CCNA_01341	0.39	-0.0
1,454,966	+		CCNA_01341	0.39	+1.1
1,454,966	+		CCNA_01341	0.39	+0.1
1,454,966	+		CCNA_01341	0.39	-0.3
1,454,974	-		CCNA_01341	0.39	+1.4
1,454,974	-		CCNA_01341	0.39	-0.2
1,454,974	-		CCNA_01341	0.39	-0.1
1,455,048	-		CCNA_01341	0.45	-0.4
1,455,116	+		CCNA_01341	0.49	+1.6
1,455,155	+		CCNA_01341	0.52	+0.7
1,455,211	+		CCNA_01341	0.56	+0.4
1,455,216	-		CCNA_01341	0.57	-0.7
1,455,253	+		CCNA_01341	0.59	+0.9
1,455,262	-		CCNA_01341	0.60	-0.2
1,455,320	+		CCNA_01341	0.64	+2.2
1,455,320	+		CCNA_01341	0.64	+0.8
1,455,337	+		CCNA_01341	0.65	+1.8
1,455,356	+		CCNA_01341	0.66	+2.5
1,455,356	+		CCNA_01341	0.66	+1.2
1,455,364	-		CCNA_01341	0.67	+1.6
1,455,364	-		CCNA_01341	0.67	-0.4
1,455,364	-		CCNA_01341	0.67	+0.8
1,455,364	-		CCNA_01341	0.67	+0.3
1,455,364	-		CCNA_01341	0.67	-0.6
1,455,372	+		CCNA_01341	0.68	+1.4
1,455,380	-		CCNA_01341	0.68	-0.4
1,455,423	+		CCNA_01341	0.71	+1.1
1,455,472	-		CCNA_01341	0.75	+0.8
1,455,493	+		CCNA_01341	0.76	+1.7
1,455,566	-		CCNA_01341	0.81	-0.4
1,455,669	-		CCNA_01341	0.88	+0.0
1,455,678	-		CCNA_01341	0.89	+0.9
1,455,714	+				+1.1
1,455,714	+				+0.8
1,455,722	-				+2.4
1,455,722	-				-0.4
1,455,723	-				-0.4
1,455,725	+				+1.6
1,455,730	+				+2.4
1,455,730	+				+1.7
1,455,730	+				+1.6
1,455,826	+				+1.0
1,455,826	+				+1.9
1,455,826	+				+1.4
1,455,833	+				+1.8
1,455,834	-				-1.3
1,455,834	-				-2.2
1,455,834	-				+0.8
1,455,841	-				-1.1
1,455,868	+				+2.6
1,455,887	-				-1.0
1,455,902	-				+0.0
1,455,936	+				+2.5
1,455,936	+				+1.1
1,455,944	-				+0.4
1,455,944	-				+0.0
1,455,962	+				+0.3
1,455,970	-				-1.0
1,455,970	-				-2.0
1,455,985	+				+2.4
1,456,007	-				-0.4
1,456,145	+		CCNA_01342	0.15	-0.6
1,456,172	+		CCNA_01342	0.17	+0.7
1,456,198	+		CCNA_01342	0.19	+0.5
1,456,204	-		CCNA_01342	0.19	+0.4
1,456,204	-		CCNA_01342	0.19	-0.0
1,456,226	+		CCNA_01342	0.21	+0.4
1,456,269	+		CCNA_01342	0.24	+0.1
1,456,320	+		CCNA_01342	0.28	+1.4
1,456,323	+		CCNA_01342	0.29	+0.4
1,456,330	+		CCNA_01342	0.29	+1.8
1,456,330	+		CCNA_01342	0.29	+0.4
1,456,330	+		CCNA_01342	0.29	-0.8
1,456,330	+		CCNA_01342	0.29	-0.1
1,456,330	+		CCNA_01342	0.29	-0.2
1,456,342	+		CCNA_01342	0.30	+0.4
1,456,357	+		CCNA_01342	0.31	-0.3
1,456,375	-		CCNA_01342	0.33	+1.2
1,456,380	+		CCNA_01342	0.33	+0.1
1,456,396	-		CCNA_01342	0.34	+1.4
1,456,423	+		CCNA_01342	0.36	+1.9
1,456,548	-		CCNA_01342	0.46	-0.4
1,456,572	+		CCNA_01342	0.48	+1.0
1,456,583	+		CCNA_01342	0.49	-0.3
1,456,591	-		CCNA_01342	0.49	-1.1
1,456,595	+		CCNA_01342	0.49	+0.7
1,456,632	-		CCNA_01342	0.52	-1.0
1,456,665	+		CCNA_01342	0.55	+1.1
1,456,665	+		CCNA_01342	0.55	+0.4
1,456,665	+		CCNA_01342	0.55	-1.1
1,456,673	-		CCNA_01342	0.55	+0.4
1,456,673	-		CCNA_01342	0.55	-0.6
1,456,673	-		CCNA_01342	0.55	+2.4
1,456,673	-		CCNA_01342	0.55	+0.4
1,456,684	-		CCNA_01342	0.56	+1.4
1,456,686	+		CCNA_01342	0.56	+0.6
1,456,690	+		CCNA_01342	0.57	+1.0
1,456,699	-		CCNA_01342	0.57	+0.9
1,456,712	+		CCNA_01342	0.58	-1.7
1,456,720	-		CCNA_01342	0.59	-1.1
1,456,720	-		CCNA_01342	0.59	-1.0
1,456,720	-		CCNA_01342	0.59	-0.8
1,456,720	-		CCNA_01342	0.59	-0.2
1,456,720	-		CCNA_01342	0.59	+0.2
1,456,743	-		CCNA_01342	0.61	+0.7
1,456,811	+		CCNA_01342	0.66	-0.6