Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01172

Experiment: PYE with benzoic 0.2 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with benzoic 0.2 mg/ml
1,291,241	+				-0.8
1,291,269	-				-0.3
1,291,271	+				-0.8
1,291,271	+				+2.3
1,291,279	-				+1.6
1,291,279	-				-0.1
1,291,303	+				-1.1
1,291,303	+				+1.3
1,291,305	-				+1.7
1,291,311	-				+0.2
1,291,350	+				+2.3
1,291,411	-				+0.7
1,291,411	-				+1.7
1,291,418	-				+0.0
1,291,420	+				-0.8
1,291,422	+				+0.7
1,291,424	+				+1.3
1,291,430	-				-0.4
1,291,486	-				+1.2
1,291,488	+				+1.3
1,291,496	-				+1.6
1,291,496	-				+1.2
1,291,496	-				+1.1
1,291,496	-				+1.2
1,291,801	-		CCNA_01171	0.14	+0.2
1,291,802	-		CCNA_01171	0.14	-0.5
1,291,811	-		CCNA_01171	0.17	+0.7
1,291,837	-		CCNA_01171	0.25	-1.0
1,291,936	+		CCNA_01171	0.54	-1.0
1,291,945	-		CCNA_01171	0.57	-0.3
1,291,963	+		CCNA_01171	0.62	+0.7
1,291,988	-		CCNA_01171	0.69	-0.5
1,291,990	+		CCNA_01171	0.70	+0.7
1,291,990	+		CCNA_01171	0.70	-0.7
1,291,990	+		CCNA_01171	0.70	-1.1
1,291,990	+		CCNA_01171	0.70	-0.3
1,291,998	-		CCNA_01171	0.72	-1.1
1,291,998	-		CCNA_01171	0.72	-0.5
1,292,020	+		CCNA_01171	0.79	-0.2
1,292,020	+		CCNA_01171	0.79	-0.2
1,292,020	+		CCNA_01171	0.79	+1.5
1,292,020	+		CCNA_01171	0.79	+0.7
1,292,020	+		CCNA_01171	0.79	-0.5
1,292,020	+		CCNA_01171	0.79	-2.1
1,292,020	+		CCNA_01171	0.79	+0.3
1,292,020	+		CCNA_01171	0.79	-0.3
1,292,020	+		CCNA_01171	0.79	+0.9
1,292,020	+		CCNA_01171	0.79	+0.5
1,292,020	+		CCNA_01171	0.79	+0.3
1,292,020	+		CCNA_01171	0.79	+0.3
1,292,020	+		CCNA_01171	0.79	+2.3
1,292,020	+		CCNA_01171	0.79	+1.3
1,292,028	-		CCNA_01171	0.81	+0.7
1,292,028	-		CCNA_01171	0.81	+1.3
1,292,028	-		CCNA_01171	0.81	+0.7
1,292,028	-		CCNA_01171	0.81	+0.3
1,292,028	-		CCNA_01171	0.81	+1.3
1,292,028	-		CCNA_01171	0.81	+0.7
1,292,028	-		CCNA_01171	0.81	-0.7
1,292,035	+		CCNA_01171	0.83	-0.3
1,292,057	+		CCNA_01171	0.90	-0.2
1,292,128	-				+0.7
1,292,128	-				+1.2
1,292,142	+				+1.5
1,292,142	+				+0.9
1,292,150	-				-1.0
1,292,150	-				-0.2
1,292,194	+				+0.5
1,292,194	+				+0.8
1,292,207	-				-0.5
1,292,207	-				+0.3
1,292,212	+				+1.4
1,292,212	+				-1.7
1,292,212	+				+0.5
1,292,212	+				+2.3
1,292,212	+				-0.5
1,292,217	+				-0.7
1,292,220	-				-0.5
1,292,285	+				+1.0
1,292,314	+		CCNA_01172	0.13	+1.2
1,292,376	+		CCNA_01172	0.21	+0.9
1,292,384	-		CCNA_01172	0.22	-0.3
1,292,384	-		CCNA_01172	0.22	+0.7
1,292,389	-		CCNA_01172	0.22	-0.5
1,292,465	-		CCNA_01172	0.31	+0.3
1,292,470	+		CCNA_01172	0.32	+1.0
1,292,501	+		CCNA_01172	0.35	+1.2
1,292,509	-		CCNA_01172	0.36	+1.3
1,292,526	+		CCNA_01172	0.38	+1.4
1,292,551	+		CCNA_01172	0.41	+1.5
1,292,566	+		CCNA_01172	0.43	+0.5
1,292,574	-		CCNA_01172	0.44	+1.4
1,292,576	+		CCNA_01172	0.44	+0.8
1,292,576	+		CCNA_01172	0.44	+1.3
1,292,621	+		CCNA_01172	0.50	+1.1
1,292,683	-		CCNA_01172	0.57	-0.5
1,292,694	+		CCNA_01172	0.58	+1.2
1,292,705	+		CCNA_01172	0.60	+2.3
1,292,718	+		CCNA_01172	0.61	+1.2
1,292,720	-		CCNA_01172	0.61	+0.5
1,292,750	+		CCNA_01172	0.65	+0.2
1,292,761	+		CCNA_01172	0.66	+0.2
1,292,778	+		CCNA_01172	0.68	+1.8
1,292,786	-		CCNA_01172	0.69	-2.0
1,292,809	+		CCNA_01172	0.72	+0.9
1,292,845	-		CCNA_01172	0.76	+0.4
1,292,852	+		CCNA_01172	0.77	+1.3
1,292,867	+		CCNA_01172	0.79	+2.3
1,292,905	+		CCNA_01172	0.83	+1.2
1,292,905	+		CCNA_01172	0.83	+1.1
1,292,913	-		CCNA_01172	0.84	-2.1
1,292,991	-				+0.2
1,293,001	+				+2.3
1,293,009	-				+0.2
1,293,009	-				+0.2
1,293,014	-				+2.1
1,293,014	-				+0.8
1,293,024	-				-1.0
1,293,046	-				-0.2
1,293,055	+				+1.0
1,293,076	+				+1.7
1,293,095	+				+2.0
1,293,109	-				-0.4
1,293,132	+				+2.0
1,293,134	-				+2.7
1,293,134	-				+1.7
1,293,146	-				+2.0
1,293,152	-				+1.7
1,293,154	+				+1.3
1,293,164	+				+1.1
1,293,164	+				+1.6
1,293,181	+				-0.2
1,293,185	+				-0.5
1,293,185	+				-0.4
1,293,185	+				+0.1
1,293,193	-				+2.3
1,293,268	+		CCNA_01173	0.26	+1.2
1,293,281	-		CCNA_01173	0.30	+1.9
1,293,301	-		CCNA_01173	0.36	+2.0
1,293,301	-		CCNA_01173	0.36	+1.2
1,293,301	-		CCNA_01173	0.36	+2.4
1,293,331	+		CCNA_01173	0.45	+1.3
1,293,331	+		CCNA_01173	0.45	+2.5
1,293,339	-		CCNA_01173	0.48	+2.2
1,293,339	-				+3.3
1,293,339	-		CCNA_01173	0.48	+2.8
1,293,353	+		CCNA_01173	0.52	+3.3
1,293,353	+		CCNA_01173	0.52	+0.6
1,293,353	+		CCNA_01173	0.52	+0.9
1,293,361	-		CCNA_01173	0.55	+2.0
1,293,361	-		CCNA_01173	0.55	+2.6
1,293,361	-		CCNA_01173	0.55	+1.1
1,293,361	-		CCNA_01173	0.55	+2.6
1,293,361	-		CCNA_01173	0.55	+2.4
1,293,361	-		CCNA_01173	0.55	+3.3
1,293,361	-		CCNA_01173	0.55	+0.3
1,293,377	+		CCNA_01173	0.59	+0.9
1,293,382	+		CCNA_01173	0.61	-0.9
1,293,385	-		CCNA_01173	0.62	-0.1
1,293,413	+		CCNA_01173	0.70	+1.1
1,293,417	+		CCNA_01173	0.72	-0.9
1,293,418	+		CCNA_01173	0.72	+0.0
1,293,489	-				+1.2
1,293,516	+				+0.9
1,293,516	+				+0.2
1,293,516	+				+0.3
1,293,524	-				+0.7
1,293,526	+				-1.6
1,293,526	+				+0.6
1,293,534	-				+3.3
1,293,534	-				+0.9
1,293,534	-				+0.2
1,293,536	+				-0.8
1,293,546	+				+0.6
1,293,547	+				+0.3
1,293,583	+				-0.3
1,293,591	-				+0.6
1,293,591	-				+1.8
1,293,591	-				+1.1
1,293,591	-				+2.1
1,293,592	+				+1.3
1,293,593	-				+2.2
1,293,607	+				+1.3
1,293,677	+		CCNA_01174	0.11	+0.7
1,293,684	-		CCNA_01174	0.12	+0.3
1,293,684	-		CCNA_01174	0.12	+2.3
1,293,750	+		CCNA_01174	0.19	+1.3
1,293,768	-		CCNA_01174	0.21	+1.3
1,293,783	-		CCNA_01174	0.22	+2.3
1,293,801	-		CCNA_01174	0.24	+1.8
1,293,829	+		CCNA_01174	0.27	+0.7
1,293,900	+		CCNA_01174	0.34	-0.0
1,293,979	-		CCNA_01174	0.43	+1.9
1,293,995	+		CCNA_01174	0.44	-0.3
1,293,995	+		CCNA_01174	0.44	+1.3
1,294,003	-		CCNA_01174	0.45	+2.3
1,294,003	-		CCNA_01174	0.45	+1.6