Experiment: PYE with benzoic 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00869 and CCNA_00870 are separated by 65 nucleotides CCNA_00870 and CCNA_00871 are separated by 19 nucleotides CCNA_00871 and CCNA_00872 overlap by 4 nucleotides CCNA_00872 and CCNA_00873 are separated by 28 nucleotides
CCNA_00869: CCNA_00869 - DNA modification methyltransferase-related protein, at 947,426 to 950,383
_00869
CCNA_00870: CCNA_00870 - hypothetical protein, at 950,449 to 950,886
_00870
CCNA_00871: CCNA_00871 - carbon-nitrogen hydrolase family protein, at 950,906 to 951,757
_00871
CCNA_00872: CCNA_00872 - glutaredoxin, at 951,754 to 952,008
_00872
CCNA_00873: CCNA_00873 - amidophosphoribosyltransferase family protein, at 952,037 to 952,834
_00873
Position (kb) 950
951
952 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 949.917 kb on - strand, within CCNA_00869 at 949.930 kb on - strand, within CCNA_00869 at 949.931 kb on - strand, within CCNA_00869 at 949.948 kb on + strand, within CCNA_00869 at 949.957 kb on - strand, within CCNA_00869 at 949.995 kb on - strand, within CCNA_00869 at 950.028 kb on - strand, within CCNA_00869 at 950.033 kb on + strand, within CCNA_00869 at 950.062 kb on - strand, within CCNA_00869 at 950.074 kb on + strand, within CCNA_00869 at 950.104 kb on + strand at 950.114 kb on - strand at 950.114 kb on - strand at 950.123 kb on + strand at 950.131 kb on - strand at 950.131 kb on - strand at 950.154 kb on + strand at 950.154 kb on + strand at 950.196 kb on + strand at 950.224 kb on - strand at 950.224 kb on - strand at 950.225 kb on - strand at 950.241 kb on - strand at 950.310 kb on - strand at 950.378 kb on + strand at 950.378 kb on + strand at 950.379 kb on + strand at 950.381 kb on + strand at 950.386 kb on - strand at 950.406 kb on - strand at 950.408 kb on + strand at 950.416 kb on - strand at 950.450 kb on - strand at 950.452 kb on + strand at 950.455 kb on - strand at 950.480 kb on + strand at 950.484 kb on + strand at 950.495 kb on + strand, within CCNA_00870 at 950.495 kb on + strand, within CCNA_00870 at 950.501 kb on + strand, within CCNA_00870 at 950.518 kb on + strand, within CCNA_00870 at 950.519 kb on + strand, within CCNA_00870 at 950.519 kb on + strand, within CCNA_00870 at 950.527 kb on - strand, within CCNA_00870 at 950.527 kb on - strand, within CCNA_00870 at 950.527 kb on - strand, within CCNA_00870 at 950.593 kb on - strand, within CCNA_00870 at 950.670 kb on - strand, within CCNA_00870 at 950.734 kb on + strand, within CCNA_00870 at 950.741 kb on + strand, within CCNA_00870 at 950.741 kb on + strand, within CCNA_00870 at 950.751 kb on + strand, within CCNA_00870 at 950.751 kb on + strand, within CCNA_00870 at 950.751 kb on + strand, within CCNA_00870 at 950.759 kb on - strand, within CCNA_00870 at 950.777 kb on - strand, within CCNA_00870 at 950.829 kb on + strand, within CCNA_00870 at 950.837 kb on - strand, within CCNA_00870 at 950.859 kb on + strand at 950.884 kb on - strand at 950.887 kb on + strand at 950.895 kb on - strand at 950.895 kb on - strand at 950.895 kb on - strand at 950.903 kb on - strand at 950.905 kb on + strand at 950.923 kb on - strand at 950.936 kb on - strand at 950.941 kb on - strand at 950.967 kb on - strand at 951.014 kb on + strand, within CCNA_00871 at 951.038 kb on + strand, within CCNA_00871 at 951.047 kb on + strand, within CCNA_00871 at 951.062 kb on + strand at 951.062 kb on + strand, within CCNA_00871 at 951.102 kb on + strand, within CCNA_00871 at 951.112 kb on + strand, within CCNA_00871 at 951.120 kb on - strand, within CCNA_00871 at 951.120 kb on - strand, within CCNA_00871 at 951.182 kb on + strand, within CCNA_00871 at 951.182 kb on + strand, within CCNA_00871 at 951.182 kb on + strand, within CCNA_00871 at 951.190 kb on - strand, within CCNA_00871 at 951.218 kb on + strand, within CCNA_00871 at 951.218 kb on + strand, within CCNA_00871 at 951.224 kb on + strand, within CCNA_00871 at 951.226 kb on - strand, within CCNA_00871 at 951.226 kb on - strand, within CCNA_00871 at 951.259 kb on - strand, within CCNA_00871 at 951.269 kb on + strand, within CCNA_00871 at 951.280 kb on + strand, within CCNA_00871 at 951.288 kb on - strand, within CCNA_00871 at 951.294 kb on + strand, within CCNA_00871 at 951.330 kb on + strand, within CCNA_00871 at 951.374 kb on + strand, within CCNA_00871 at 951.379 kb on + strand, within CCNA_00871 at 951.379 kb on + strand, within CCNA_00871 at 951.387 kb on - strand, within CCNA_00871 at 951.393 kb on - strand, within CCNA_00871 at 951.395 kb on - strand, within CCNA_00871 at 951.411 kb on - strand, within CCNA_00871 at 951.444 kb on + strand, within CCNA_00871 at 951.482 kb on + strand, within CCNA_00871 at 951.510 kb on + strand, within CCNA_00871 at 951.510 kb on + strand, within CCNA_00871 at 951.550 kb on - strand, within CCNA_00871 at 951.552 kb on - strand, within CCNA_00871 at 951.575 kb on - strand, within CCNA_00871 at 951.575 kb on - strand, within CCNA_00871 at 951.575 kb on - strand, within CCNA_00871 at 951.637 kb on + strand, within CCNA_00871 at 951.665 kb on - strand, within CCNA_00871 at 951.683 kb on + strand at 951.683 kb on + strand at 951.683 kb on + strand at 951.691 kb on - strand at 951.695 kb on + strand at 951.703 kb on - strand at 951.716 kb on + strand at 951.717 kb on + strand at 951.727 kb on + strand at 951.735 kb on - strand at 951.740 kb on - strand at 951.742 kb on + strand at 951.742 kb on + strand at 951.742 kb on + strand at 951.750 kb on - strand at 951.750 kb on - strand at 951.775 kb on - strand at 951.780 kb on - strand, within CCNA_00872 at 951.781 kb on + strand, within CCNA_00872 at 951.805 kb on - strand, within CCNA_00872 at 951.864 kb on - strand, within CCNA_00872 at 951.899 kb on - strand, within CCNA_00872 at 951.941 kb on + strand, within CCNA_00872 at 951.971 kb on + strand, within CCNA_00872 at 951.979 kb on - strand, within CCNA_00872 at 951.985 kb on + strand at 951.991 kb on + strand at 951.993 kb on - strand at 952.004 kb on + strand at 952.012 kb on - strand at 952.025 kb on + strand at 952.033 kb on - strand at 952.036 kb on + strand at 952.038 kb on + strand at 952.046 kb on - strand at 952.082 kb on - strand at 952.127 kb on + strand, within CCNA_00873 at 952.137 kb on + strand, within CCNA_00873 at 952.148 kb on + strand, within CCNA_00873 at 952.148 kb on + strand, within CCNA_00873 at 952.148 kb on + strand, within CCNA_00873 at 952.148 kb on + strand, within CCNA_00873 at 952.156 kb on - strand, within CCNA_00873 at 952.181 kb on - strand, within CCNA_00873 at 952.185 kb on + strand, within CCNA_00873 at 952.214 kb on + strand, within CCNA_00873 at 952.215 kb on - strand, within CCNA_00873 at 952.215 kb on - strand, within CCNA_00873 at 952.220 kb on + strand, within CCNA_00873 at 952.228 kb on - strand, within CCNA_00873 at 952.243 kb on + strand, within CCNA_00873 at 952.243 kb on + strand, within CCNA_00873 at 952.251 kb on - strand, within CCNA_00873 at 952.275 kb on - strand, within CCNA_00873 at 952.294 kb on + strand, within CCNA_00873 at 952.378 kb on + strand, within CCNA_00873 at 952.386 kb on - strand, within CCNA_00873 at 952.386 kb on - strand, within CCNA_00873 at 952.416 kb on + strand, within CCNA_00873 at 952.417 kb on - strand, within CCNA_00873 at 952.440 kb on + strand, within CCNA_00873 at 952.504 kb on + strand, within CCNA_00873 at 952.504 kb on + strand, within CCNA_00873 at 952.512 kb on - strand, within CCNA_00873 at 952.512 kb on - strand, within CCNA_00873 at 952.512 kb on - strand, within CCNA_00873 at 952.512 kb on - strand, within CCNA_00873 at 952.512 kb on - strand, within CCNA_00873 at 952.527 kb on + strand, within CCNA_00873 at 952.560 kb on + strand, within CCNA_00873 at 952.560 kb on + strand, within CCNA_00873 at 952.560 kb on + strand, within CCNA_00873 at 952.566 kb on + strand, within CCNA_00873 at 952.567 kb on - strand, within CCNA_00873 at 952.568 kb on - strand, within CCNA_00873 at 952.608 kb on + strand, within CCNA_00873 at 952.613 kb on + strand, within CCNA_00873 at 952.622 kb on - strand, within CCNA_00873 at 952.624 kb on + strand, within CCNA_00873 at 952.656 kb on + strand, within CCNA_00873 at 952.702 kb on - strand, within CCNA_00873 at 952.702 kb on - strand, within CCNA_00873 at 952.707 kb on - strand, within CCNA_00873 at 952.739 kb on + strand, within CCNA_00873 at 952.740 kb on - strand, within CCNA_00873
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with benzoic 0.2 mg/ml remove 949,917 - CCNA_00869 0.84 +0.3 949,930 - CCNA_00869 0.85 +2.4 949,931 - CCNA_00869 0.85 +1.6 949,948 + CCNA_00869 0.85 +2.3 949,957 - CCNA_00869 0.86 +0.3 949,995 - CCNA_00869 0.87 +3.5 950,028 - CCNA_00869 0.88 +0.4 950,033 + CCNA_00869 0.88 +0.7 950,062 - CCNA_00869 0.89 +0.2 950,074 + CCNA_00869 0.90 +2.3 950,104 + -0.5 950,114 - -0.2 950,114 - +1.4 950,123 + +0.3 950,131 - -0.3 950,131 - +1.3 950,154 + -0.3 950,154 + +0.7 950,196 + +1.7 950,224 - +1.6 950,224 - +2.0 950,225 - +1.0 950,241 - +1.2 950,310 - +2.3 950,378 + +0.7 950,378 + -0.5 950,379 + +1.1 950,381 + -1.0 950,386 - +2.8 950,406 - +0.5 950,408 + +0.1 950,416 - +0.7 950,450 - +0.8 950,452 + +0.3 950,455 - +1.6 950,480 + -0.3 950,484 + -0.5 950,495 + CCNA_00870 0.11 -1.0 950,495 + CCNA_00870 0.11 +0.6 950,501 + CCNA_00870 0.12 +1.2 950,518 + CCNA_00870 0.16 -0.2 950,519 + CCNA_00870 0.16 +1.3 950,519 + CCNA_00870 0.16 +0.3 950,527 - CCNA_00870 0.18 +1.5 950,527 - CCNA_00870 0.18 +2.6 950,527 - CCNA_00870 0.18 +1.2 950,593 - CCNA_00870 0.33 +0.5 950,670 - CCNA_00870 0.50 +0.8 950,734 + CCNA_00870 0.65 -0.9 950,741 + CCNA_00870 0.67 -1.2 950,741 + CCNA_00870 0.67 +1.3 950,751 + CCNA_00870 0.69 -0.5 950,751 + CCNA_00870 0.69 +1.3 950,751 + CCNA_00870 0.69 -0.0 950,759 - CCNA_00870 0.71 +2.1 950,777 - CCNA_00870 0.75 +1.2 950,829 + CCNA_00870 0.87 -1.4 950,837 - CCNA_00870 0.89 +1.9 950,859 + -1.3 950,884 - +0.7 950,887 + +0.7 950,895 - +1.0 950,895 - +2.2 950,895 - +3.9 950,903 - +2.4 950,905 + +0.5 950,923 - +2.0 950,936 - +1.7 950,941 - +0.5 950,967 - +1.2 951,014 + CCNA_00871 0.13 +1.3 951,038 + CCNA_00871 0.15 +1.1 951,047 + CCNA_00871 0.17 -0.8 951,062 + +2.3 951,062 + CCNA_00871 0.18 -1.3 951,102 + CCNA_00871 0.23 +0.3 951,112 + CCNA_00871 0.24 +0.3 951,120 - CCNA_00871 0.25 +1.1 951,120 - CCNA_00871 0.25 +1.7 951,182 + CCNA_00871 0.32 -1.5 951,182 + CCNA_00871 0.32 -0.0 951,182 + CCNA_00871 0.32 -0.0 951,190 - CCNA_00871 0.33 +1.4 951,218 + CCNA_00871 0.37 -1.3 951,218 + CCNA_00871 0.37 +1.3 951,224 + CCNA_00871 0.37 -0.0 951,226 - CCNA_00871 0.38 +1.2 951,226 - CCNA_00871 0.38 +2.3 951,259 - CCNA_00871 0.41 +3.6 951,269 + CCNA_00871 0.43 +1.0 951,280 + CCNA_00871 0.44 -0.5 951,288 - CCNA_00871 0.45 +1.7 951,294 + CCNA_00871 0.46 -0.3 951,330 + CCNA_00871 0.50 +0.3 951,374 + CCNA_00871 0.55 +0.3 951,379 + CCNA_00871 0.56 -1.0 951,379 + CCNA_00871 0.56 +0.5 951,387 - CCNA_00871 0.56 +0.2 951,393 - CCNA_00871 0.57 -0.0 951,395 - CCNA_00871 0.57 +1.8 951,411 - CCNA_00871 0.59 +1.6 951,444 + CCNA_00871 0.63 -1.1 951,482 + CCNA_00871 0.68 -1.5 951,510 + CCNA_00871 0.71 +1.7 951,510 + CCNA_00871 0.71 +2.3 951,550 - CCNA_00871 0.76 +0.8 951,552 - CCNA_00871 0.76 +0.1 951,575 - CCNA_00871 0.79 +1.3 951,575 - CCNA_00871 0.79 +1.6 951,575 - CCNA_00871 0.79 +0.3 951,637 + CCNA_00871 0.86 -0.3 951,665 - CCNA_00871 0.89 +1.3 951,683 + -0.5 951,683 + -1.6 951,683 + +1.3 951,691 - +0.7 951,695 + +0.3 951,703 - +0.7 951,716 + -0.0 951,717 + -0.5 951,727 + +2.3 951,735 - +1.8 951,740 - +0.8 951,742 + +0.7 951,742 + -0.7 951,742 + -0.3 951,750 - -0.5 951,750 - -0.9 951,775 - +0.7 951,780 - CCNA_00872 0.10 +1.3 951,781 + CCNA_00872 0.11 -1.2 951,805 - CCNA_00872 0.20 +0.3 951,864 - CCNA_00872 0.43 +0.5 951,899 - CCNA_00872 0.57 +0.8 951,941 + CCNA_00872 0.73 +1.1 951,971 + CCNA_00872 0.85 -1.9 951,979 - CCNA_00872 0.88 -0.3 951,985 + -1.5 951,991 + +2.3 951,993 - +0.3 952,004 + -0.7 952,012 - +1.3 952,025 + +0.6 952,033 - -1.3 952,036 + -1.0 952,038 + +0.7 952,046 - +1.3 952,082 - +2.3 952,127 + CCNA_00873 0.11 -2.2 952,137 + CCNA_00873 0.13 +0.3 952,148 + CCNA_00873 0.14 -0.7 952,148 + CCNA_00873 0.14 -0.2 952,148 + CCNA_00873 0.14 -0.5 952,148 + CCNA_00873 0.14 -0.9 952,156 - CCNA_00873 0.15 +0.7 952,181 - CCNA_00873 0.18 +0.9 952,185 + CCNA_00873 0.19 -0.2 952,214 + CCNA_00873 0.22 -0.3 952,215 - CCNA_00873 0.22 -0.3 952,215 - CCNA_00873 0.22 -0.0 952,220 + CCNA_00873 0.23 -1.3 952,228 - CCNA_00873 0.24 -1.3 952,243 + CCNA_00873 0.26 -0.4 952,243 + CCNA_00873 0.26 -0.9 952,251 - CCNA_00873 0.27 +0.7 952,275 - CCNA_00873 0.30 -0.2 952,294 + CCNA_00873 0.32 -2.2 952,378 + CCNA_00873 0.43 +0.5 952,386 - CCNA_00873 0.44 -0.9 952,386 - CCNA_00873 0.44 +1.4 952,416 + CCNA_00873 0.47 -0.9 952,417 - CCNA_00873 0.48 -1.8 952,440 + CCNA_00873 0.51 -2.1 952,504 + CCNA_00873 0.59 +1.1 952,504 + CCNA_00873 0.59 -1.8 952,512 - CCNA_00873 0.60 +0.3 952,512 - CCNA_00873 0.60 +0.1 952,512 - CCNA_00873 0.60 -3.1 952,512 - CCNA_00873 0.60 -0.1 952,512 - CCNA_00873 0.60 +0.3 952,527 + CCNA_00873 0.61 -0.0 952,560 + CCNA_00873 0.66 -2.2 952,560 + CCNA_00873 0.66 -0.0 952,560 + CCNA_00873 0.66 +1.3 952,566 + CCNA_00873 0.66 -0.0 952,567 - CCNA_00873 0.66 -1.2 952,568 - CCNA_00873 0.67 +2.1 952,608 + CCNA_00873 0.72 +0.2 952,613 + CCNA_00873 0.72 -1.4 952,622 - CCNA_00873 0.73 +0.7 952,624 + CCNA_00873 0.74 +1.4 952,656 + CCNA_00873 0.78 +0.3 952,702 - CCNA_00873 0.83 +0.5 952,702 - CCNA_00873 0.83 +1.1 952,707 - CCNA_00873 0.84 +1.3 952,739 + CCNA_00873 0.88 -0.0 952,740 - CCNA_00873 0.88 +0.3
Or see this region's nucleotide sequence