Experiment: PYE with benzoic 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00726 and CCNA_00727 are separated by 156 nucleotides CCNA_00727 and CCNA_00728 are separated by 72 nucleotides CCNA_00728 and CCNA_00729 are separated by 94 nucleotides
CCNA_00726: CCNA_00726 - acyl-CoA dehydrogenase, at 781,663 to 782,970
_00726
CCNA_00727: CCNA_00727 - ribosomal-protein-alanine acetyltransferase, at 783,127 to 783,723
_00727
CCNA_00728: CCNA_00728 - hypothetical protein, at 783,796 to 784,959
_00728
CCNA_00729: CCNA_00729 - hypothetical protein, at 785,054 to 786,358
_00729
Position (kb) 783
784
785 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 782.838 kb on - strand, within CCNA_00726 at 782.881 kb on - strand at 782.926 kb on - strand at 782.927 kb on - strand at 782.929 kb on + strand at 782.954 kb on - strand at 782.959 kb on + strand at 782.965 kb on + strand at 782.965 kb on + strand at 782.965 kb on + strand at 782.965 kb on + strand at 782.965 kb on + strand at 782.973 kb on - strand at 782.973 kb on - strand at 782.973 kb on - strand at 782.973 kb on - strand at 783.028 kb on - strand at 783.038 kb on - strand at 783.067 kb on + strand at 783.067 kb on + strand at 783.075 kb on - strand at 783.075 kb on - strand at 783.075 kb on - strand at 783.075 kb on - strand at 783.075 kb on - strand at 783.075 kb on - strand at 783.080 kb on - strand at 783.084 kb on + strand at 783.092 kb on - strand at 783.092 kb on - strand at 783.128 kb on + strand at 783.130 kb on - strand at 783.154 kb on - strand at 783.214 kb on + strand, within CCNA_00727 at 783.236 kb on + strand, within CCNA_00727 at 783.272 kb on + strand, within CCNA_00727 at 783.282 kb on + strand, within CCNA_00727 at 783.290 kb on - strand, within CCNA_00727 at 783.295 kb on + strand, within CCNA_00727 at 783.300 kb on + strand, within CCNA_00727 at 783.300 kb on + strand, within CCNA_00727 at 783.303 kb on - strand, within CCNA_00727 at 783.387 kb on - strand, within CCNA_00727 at 783.387 kb on - strand, within CCNA_00727 at 783.429 kb on + strand, within CCNA_00727 at 783.432 kb on - strand, within CCNA_00727 at 783.442 kb on - strand, within CCNA_00727 at 783.446 kb on + strand, within CCNA_00727 at 783.451 kb on + strand, within CCNA_00727 at 783.455 kb on - strand, within CCNA_00727 at 783.459 kb on - strand, within CCNA_00727 at 783.462 kb on + strand, within CCNA_00727 at 783.464 kb on - strand, within CCNA_00727 at 783.504 kb on + strand, within CCNA_00727 at 783.504 kb on + strand, within CCNA_00727 at 783.504 kb on + strand, within CCNA_00727 at 783.523 kb on + strand, within CCNA_00727 at 783.523 kb on + strand, within CCNA_00727 at 783.528 kb on + strand, within CCNA_00727 at 783.528 kb on + strand, within CCNA_00727 at 783.605 kb on + strand, within CCNA_00727 at 783.605 kb on + strand, within CCNA_00727 at 783.639 kb on - strand, within CCNA_00727 at 783.656 kb on - strand, within CCNA_00727 at 783.705 kb on + strand at 783.736 kb on - strand at 783.737 kb on - strand at 783.775 kb on + strand at 783.783 kb on - strand at 783.783 kb on - strand at 783.802 kb on + strand at 783.826 kb on + strand at 783.845 kb on + strand at 783.924 kb on + strand, within CCNA_00728 at 783.953 kb on + strand, within CCNA_00728 at 783.953 kb on + strand, within CCNA_00728 at 783.984 kb on - strand, within CCNA_00728 at 784.035 kb on + strand, within CCNA_00728 at 784.043 kb on - strand, within CCNA_00728 at 784.060 kb on - strand, within CCNA_00728 at 784.062 kb on + strand, within CCNA_00728 at 784.070 kb on - strand, within CCNA_00728 at 784.085 kb on + strand, within CCNA_00728 at 784.085 kb on + strand, within CCNA_00728 at 784.096 kb on + strand, within CCNA_00728 at 784.096 kb on + strand, within CCNA_00728 at 784.104 kb on + strand, within CCNA_00728 at 784.251 kb on + strand, within CCNA_00728 at 784.251 kb on + strand, within CCNA_00728 at 784.257 kb on + strand, within CCNA_00728 at 784.257 kb on + strand, within CCNA_00728 at 784.290 kb on - strand, within CCNA_00728 at 784.302 kb on - strand, within CCNA_00728 at 784.303 kb on - strand, within CCNA_00728 at 784.309 kb on + strand, within CCNA_00728 at 784.310 kb on + strand, within CCNA_00728 at 784.325 kb on - strand, within CCNA_00728 at 784.332 kb on + strand, within CCNA_00728 at 784.333 kb on + strand, within CCNA_00728 at 784.340 kb on - strand, within CCNA_00728 at 784.345 kb on + strand, within CCNA_00728 at 784.349 kb on + strand, within CCNA_00728 at 784.366 kb on - strand, within CCNA_00728 at 784.405 kb on + strand, within CCNA_00728 at 784.413 kb on - strand, within CCNA_00728 at 784.413 kb on - strand, within CCNA_00728 at 784.426 kb on + strand, within CCNA_00728 at 784.434 kb on - strand, within CCNA_00728 at 784.465 kb on - strand, within CCNA_00728 at 784.483 kb on - strand, within CCNA_00728 at 784.532 kb on + strand, within CCNA_00728 at 784.551 kb on + strand, within CCNA_00728 at 784.559 kb on - strand, within CCNA_00728 at 784.559 kb on - strand, within CCNA_00728 at 784.563 kb on + strand, within CCNA_00728 at 784.563 kb on + strand, within CCNA_00728 at 784.563 kb on + strand, within CCNA_00728 at 784.571 kb on - strand, within CCNA_00728 at 784.571 kb on - strand, within CCNA_00728 at 784.610 kb on + strand, within CCNA_00728 at 784.616 kb on + strand, within CCNA_00728 at 784.620 kb on + strand, within CCNA_00728 at 784.621 kb on + strand, within CCNA_00728 at 784.634 kb on - strand, within CCNA_00728 at 784.649 kb on - strand, within CCNA_00728 at 784.650 kb on + strand, within CCNA_00728 at 784.674 kb on - strand, within CCNA_00728 at 784.675 kb on + strand, within CCNA_00728 at 784.684 kb on + strand, within CCNA_00728 at 784.693 kb on + strand, within CCNA_00728 at 784.702 kb on - strand, within CCNA_00728 at 784.706 kb on - strand, within CCNA_00728 at 784.720 kb on - strand, within CCNA_00728 at 784.722 kb on + strand, within CCNA_00728 at 784.730 kb on - strand, within CCNA_00728 at 784.787 kb on - strand, within CCNA_00728 at 784.803 kb on + strand, within CCNA_00728 at 784.810 kb on + strand, within CCNA_00728 at 784.880 kb on - strand at 784.890 kb on - strand at 784.907 kb on - strand at 784.963 kb on - strand at 784.985 kb on + strand at 785.060 kb on + strand at 785.060 kb on - strand at 785.068 kb on - strand at 785.072 kb on - strand at 785.131 kb on + strand at 785.131 kb on + strand at 785.132 kb on + strand at 785.132 kb on + strand at 785.132 kb on + strand at 785.139 kb on - strand at 785.140 kb on - strand at 785.140 kb on - strand at 785.140 kb on - strand at 785.140 kb on - strand at 785.140 kb on - strand at 785.140 kb on - strand at 785.183 kb on - strand at 785.208 kb on + strand, within CCNA_00729 at 785.208 kb on + strand, within CCNA_00729 at 785.254 kb on + strand, within CCNA_00729 at 785.263 kb on - strand, within CCNA_00729 at 785.263 kb on - strand, within CCNA_00729 at 785.263 kb on - strand, within CCNA_00729 at 785.263 kb on - strand, within CCNA_00729 at 785.318 kb on + strand, within CCNA_00729 at 785.379 kb on - strand, within CCNA_00729 at 785.381 kb on + strand, within CCNA_00729 at 785.389 kb on - strand, within CCNA_00729 at 785.389 kb on - strand, within CCNA_00729 at 785.394 kb on - strand, within CCNA_00729 at 785.416 kb on - strand, within CCNA_00729 at 785.416 kb on - strand, within CCNA_00729 at 785.443 kb on - strand, within CCNA_00729 at 785.499 kb on - strand, within CCNA_00729 at 785.499 kb on - strand, within CCNA_00729 at 785.517 kb on - strand, within CCNA_00729 at 785.602 kb on + strand, within CCNA_00729 at 785.648 kb on - strand, within CCNA_00729 at 785.691 kb on + strand, within CCNA_00729 at 785.699 kb on - strand, within CCNA_00729 at 785.701 kb on + strand, within CCNA_00729 at 785.701 kb on + strand, within CCNA_00729 at 785.709 kb on - strand, within CCNA_00729 at 785.734 kb on - strand, within CCNA_00729 at 785.739 kb on + strand, within CCNA_00729 at 785.772 kb on + strand, within CCNA_00729 at 785.782 kb on + strand, within CCNA_00729 at 785.782 kb on + strand, within CCNA_00729 at 785.790 kb on - strand, within CCNA_00729 at 785.790 kb on - strand, within CCNA_00729 at 785.801 kb on + strand, within CCNA_00729 at 785.812 kb on + strand, within CCNA_00729 at 785.812 kb on + strand, within CCNA_00729 at 785.812 kb on + strand, within CCNA_00729 at 785.820 kb on - strand, within CCNA_00729 at 785.820 kb on - strand, within CCNA_00729 at 785.822 kb on + strand, within CCNA_00729 at 785.822 kb on + strand, within CCNA_00729 at 785.848 kb on + strand, within CCNA_00729 at 785.878 kb on + strand, within CCNA_00729 at 785.945 kb on + strand, within CCNA_00729
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with benzoic 0.2 mg/ml remove 782,838 - CCNA_00726 0.90 +1.6 782,881 - +2.3 782,926 - +2.0 782,927 - +2.0 782,929 + -0.0 782,954 - +1.7 782,959 + +0.3 782,965 + -1.0 782,965 + +2.6 782,965 + +1.3 782,965 + +1.3 782,965 + -0.2 782,973 - +1.0 782,973 - -0.0 782,973 - +0.8 782,973 - -1.4 783,028 - +2.7 783,038 - +1.4 783,067 + -0.4 783,067 + +0.5 783,075 - -0.9 783,075 - -1.3 783,075 - +0.8 783,075 - -0.6 783,075 - -0.7 783,075 - +0.6 783,080 - +2.6 783,084 + -1.0 783,092 - +1.3 783,092 - +1.0 783,128 + -1.4 783,130 - +1.6 783,154 - +1.0 783,214 + CCNA_00727 0.15 +0.4 783,236 + CCNA_00727 0.18 +1.1 783,272 + CCNA_00727 0.24 -0.1 783,282 + CCNA_00727 0.26 +0.6 783,290 - CCNA_00727 0.27 -0.0 783,295 + CCNA_00727 0.28 +1.0 783,300 + CCNA_00727 0.29 -0.2 783,300 + CCNA_00727 0.29 +2.4 783,303 - CCNA_00727 0.29 -0.2 783,387 - CCNA_00727 0.44 +1.6 783,387 - CCNA_00727 0.44 -1.2 783,429 + CCNA_00727 0.51 +0.4 783,432 - CCNA_00727 0.51 +1.0 783,442 - CCNA_00727 0.53 +3.3 783,446 + CCNA_00727 0.53 -1.0 783,451 + CCNA_00727 0.54 +1.1 783,455 - CCNA_00727 0.55 +3.7 783,459 - CCNA_00727 0.56 +1.7 783,462 + CCNA_00727 0.56 +1.0 783,464 - CCNA_00727 0.56 -0.3 783,504 + CCNA_00727 0.63 +1.3 783,504 + CCNA_00727 0.63 +1.0 783,504 + CCNA_00727 0.63 +0.3 783,523 + CCNA_00727 0.66 +1.1 783,523 + CCNA_00727 0.66 +0.8 783,528 + CCNA_00727 0.67 +0.6 783,528 + CCNA_00727 0.67 +1.9 783,605 + CCNA_00727 0.80 +2.3 783,605 + CCNA_00727 0.80 +2.9 783,639 - CCNA_00727 0.86 +1.6 783,656 - CCNA_00727 0.89 +1.0 783,705 + +0.3 783,736 - +0.6 783,737 - -0.0 783,775 + +1.3 783,783 - +0.6 783,783 - -0.9 783,802 + +0.8 783,826 + +2.0 783,845 + +0.5 783,924 + CCNA_00728 0.11 +0.5 783,953 + CCNA_00728 0.13 -1.2 783,953 + CCNA_00728 0.13 +1.0 783,984 - CCNA_00728 0.16 +0.8 784,035 + CCNA_00728 0.21 -0.5 784,043 - CCNA_00728 0.21 -0.1 784,060 - CCNA_00728 0.23 +0.8 784,062 + CCNA_00728 0.23 +1.0 784,070 - CCNA_00728 0.24 +1.2 784,085 + CCNA_00728 0.25 +1.3 784,085 + CCNA_00728 0.25 +2.7 784,096 + CCNA_00728 0.26 +2.2 784,096 + CCNA_00728 0.26 +0.3 784,104 + CCNA_00728 0.26 +1.0 784,251 + CCNA_00728 0.39 +2.3 784,251 + CCNA_00728 0.39 -0.6 784,257 + CCNA_00728 0.40 -1.0 784,257 + CCNA_00728 0.40 +1.6 784,290 - CCNA_00728 0.42 +0.3 784,302 - CCNA_00728 0.43 +1.0 784,303 - CCNA_00728 0.44 -0.5 784,309 + CCNA_00728 0.44 +1.4 784,310 + CCNA_00728 0.44 -0.8 784,325 - CCNA_00728 0.45 -0.3 784,332 + CCNA_00728 0.46 -1.3 784,333 + CCNA_00728 0.46 +0.7 784,340 - CCNA_00728 0.47 -0.0 784,345 + CCNA_00728 0.47 +2.6 784,349 + CCNA_00728 0.48 -0.4 784,366 - CCNA_00728 0.49 -0.6 784,405 + CCNA_00728 0.52 +1.5 784,413 - CCNA_00728 0.53 +1.4 784,413 - CCNA_00728 0.53 +0.2 784,426 + CCNA_00728 0.54 +0.6 784,434 - CCNA_00728 0.55 -0.4 784,465 - CCNA_00728 0.57 +0.6 784,483 - CCNA_00728 0.59 +0.9 784,532 + CCNA_00728 0.63 +0.6 784,551 + CCNA_00728 0.65 +1.2 784,559 - CCNA_00728 0.66 -0.6 784,559 - CCNA_00728 0.66 +1.6 784,563 + CCNA_00728 0.66 -1.1 784,563 + CCNA_00728 0.66 +2.4 784,563 + CCNA_00728 0.66 +1.0 784,571 - CCNA_00728 0.67 +0.3 784,571 - CCNA_00728 0.67 +1.6 784,610 + CCNA_00728 0.70 +0.3 784,616 + CCNA_00728 0.70 -0.0 784,620 + CCNA_00728 0.71 -1.7 784,621 + CCNA_00728 0.71 -1.1 784,634 - CCNA_00728 0.72 -1.3 784,649 - CCNA_00728 0.73 +0.6 784,650 + CCNA_00728 0.73 +0.1 784,674 - CCNA_00728 0.75 +3.6 784,675 + CCNA_00728 0.76 +0.6 784,684 + CCNA_00728 0.76 +1.2 784,693 + CCNA_00728 0.77 +0.6 784,702 - CCNA_00728 0.78 -1.8 784,706 - CCNA_00728 0.78 -0.6 784,720 - CCNA_00728 0.79 +1.0 784,722 + CCNA_00728 0.80 -1.8 784,730 - CCNA_00728 0.80 -0.9 784,787 - CCNA_00728 0.85 +1.6 784,803 + CCNA_00728 0.87 -0.7 784,810 + CCNA_00728 0.87 +0.6 784,880 - +0.3 784,890 - +0.6 784,907 - -0.6 784,963 - +0.8 784,985 + -1.7 785,060 + +0.0 785,060 - +0.3 785,068 - -0.3 785,072 - +0.3 785,131 + +0.3 785,131 + +1.7 785,132 + +0.6 785,132 + +1.8 785,132 + +1.2 785,139 - -0.0 785,140 - +0.8 785,140 - -1.2 785,140 - +0.7 785,140 - -0.0 785,140 - +0.3 785,140 - -0.0 785,183 - +1.0 785,208 + CCNA_00729 0.12 +1.0 785,208 + CCNA_00729 0.12 +0.6 785,254 + CCNA_00729 0.15 +1.7 785,263 - CCNA_00729 0.16 -0.7 785,263 - CCNA_00729 0.16 +0.3 785,263 - CCNA_00729 0.16 -0.9 785,263 - CCNA_00729 0.16 -1.7 785,318 + CCNA_00729 0.20 +1.2 785,379 - CCNA_00729 0.25 +1.8 785,381 + CCNA_00729 0.25 +1.7 785,389 - CCNA_00729 0.26 +0.3 785,389 - CCNA_00729 0.26 -1.2 785,394 - CCNA_00729 0.26 -1.3 785,416 - CCNA_00729 0.28 +1.6 785,416 - CCNA_00729 0.28 +1.3 785,443 - CCNA_00729 0.30 -1.0 785,499 - CCNA_00729 0.34 +0.8 785,499 - CCNA_00729 0.34 -0.4 785,517 - CCNA_00729 0.35 -2.3 785,602 + CCNA_00729 0.42 +2.0 785,648 - CCNA_00729 0.46 -0.2 785,691 + CCNA_00729 0.49 +2.9 785,699 - CCNA_00729 0.49 +0.2 785,701 + CCNA_00729 0.50 +1.2 785,701 + CCNA_00729 0.50 +0.6 785,709 - CCNA_00729 0.50 +0.6 785,734 - CCNA_00729 0.52 +1.5 785,739 + CCNA_00729 0.52 +1.5 785,772 + CCNA_00729 0.55 +2.7 785,782 + CCNA_00729 0.56 +1.2 785,782 + CCNA_00729 0.56 +3.2 785,790 - CCNA_00729 0.56 +0.8 785,790 - CCNA_00729 0.56 +0.6 785,801 + CCNA_00729 0.57 +1.9 785,812 + CCNA_00729 0.58 +3.5 785,812 + CCNA_00729 0.58 +1.6 785,812 + CCNA_00729 0.58 +0.7 785,820 - CCNA_00729 0.59 -0.6 785,820 - CCNA_00729 0.59 -0.9 785,822 + CCNA_00729 0.59 +1.1 785,822 + CCNA_00729 0.59 +0.9 785,848 + CCNA_00729 0.61 +0.8 785,878 + CCNA_00729 0.63 +1.5 785,945 + CCNA_00729 0.68 +1.7
Or see this region's nucleotide sequence