Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00709

Experiment: PYE with benzoic 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00708 and CCNA_00709 are separated by 107 nucleotidesCCNA_00709 and CCNA_00710 are separated by 120 nucleotides CCNA_00708: CCNA_00708 - cobaltochelatase cobT subunit, at 765,182 to 767,110 _00708 CCNA_00709: CCNA_00709 - hypothetical protein, at 767,218 to 767,400 _00709 CCNA_00710: CCNA_00710 - alpha/beta hydrolase family protein, at 767,521 to 768,690 _00710 Position (kb) 767 768Strain fitness (log2 ratio) -2 -1 0 1 2 3at 766.260 kb on - strand, within CCNA_00708at 766.294 kb on - strand, within CCNA_00708at 766.404 kb on - strand, within CCNA_00708at 766.430 kb on - strand, within CCNA_00708at 766.491 kb on - strand, within CCNA_00708at 766.556 kb on + strand, within CCNA_00708at 766.564 kb on - strand, within CCNA_00708at 766.564 kb on - strand, within CCNA_00708at 766.564 kb on - strand, within CCNA_00708at 766.564 kb on - strand, within CCNA_00708at 766.580 kb on - strand, within CCNA_00708at 766.697 kb on - strand, within CCNA_00708at 766.718 kb on - strand, within CCNA_00708at 766.851 kb on - strand, within CCNA_00708at 766.873 kb on - strand, within CCNA_00708at 767.067 kb on - strandat 767.078 kb on - strandat 767.078 kb on - strandat 767.119 kb on + strandat 767.209 kb on - strandat 767.220 kb on + strandat 767.246 kb on + strand, within CCNA_00709at 767.264 kb on - strand, within CCNA_00709at 767.296 kb on + strand, within CCNA_00709at 767.322 kb on - strand, within CCNA_00709at 767.339 kb on + strand, within CCNA_00709at 767.371 kb on + strand, within CCNA_00709at 767.371 kb on + strand, within CCNA_00709at 767.371 kb on + strand, within CCNA_00709at 767.371 kb on + strand, within CCNA_00709at 767.373 kb on + strand, within CCNA_00709at 767.373 kb on + strand, within CCNA_00709at 767.373 kb on + strand, within CCNA_00709at 767.373 kb on + strand, within CCNA_00709at 767.373 kb on + strand, within CCNA_00709at 767.373 kb on + strand, within CCNA_00709at 767.373 kb on + strand, within CCNA_00709at 767.373 kb on + strand, within CCNA_00709at 767.373 kb on + strand, within CCNA_00709at 767.373 kb on + strand, within CCNA_00709at 767.379 kb on - strand, within CCNA_00709at 767.379 kb on - strand, within CCNA_00709at 767.381 kb on - strand, within CCNA_00709at 767.461 kb on - strandat 767.496 kb on - strandat 767.531 kb on + strandat 767.537 kb on + strandat 767.539 kb on - strandat 767.545 kb on - strandat 767.545 kb on - strandat 767.576 kb on - strandat 767.581 kb on - strandat 767.583 kb on + strandat 767.591 kb on - strandat 767.598 kb on + strandat 767.599 kb on + strandat 767.606 kb on + strandat 767.621 kb on - strandat 767.645 kb on + strand, within CCNA_00710at 767.650 kb on + strand, within CCNA_00710at 767.653 kb on - strand, within CCNA_00710at 767.658 kb on - strand, within CCNA_00710at 767.689 kb on - strand, within CCNA_00710at 767.697 kb on + strand, within CCNA_00710at 767.713 kb on + strand, within CCNA_00710at 767.716 kb on - strand, within CCNA_00710at 767.773 kb on + strand, within CCNA_00710at 767.773 kb on + strand, within CCNA_00710at 767.801 kb on - strand, within CCNA_00710at 767.838 kb on + strand, within CCNA_00710at 767.843 kb on + strand, within CCNA_00710at 767.851 kb on - strand, within CCNA_00710at 767.851 kb on - strand, within CCNA_00710at 767.869 kb on + strand, within CCNA_00710at 767.870 kb on - strand, within CCNA_00710at 767.872 kb on - strand, within CCNA_00710at 767.872 kb on - strand, within CCNA_00710at 767.872 kb on - strand, within CCNA_00710at 767.942 kb on - strand, within CCNA_00710at 767.979 kb on + strand, within CCNA_00710at 767.979 kb on + strand, within CCNA_00710at 767.979 kb on + strand, within CCNA_00710at 767.979 kb on + strand, within CCNA_00710at 767.979 kb on + strand, within CCNA_00710at 767.979 kb on + strand, within CCNA_00710at 767.979 kb on + strand, within CCNA_00710at 767.987 kb on - strand, within CCNA_00710at 767.987 kb on - strand, within CCNA_00710at 767.987 kb on - strand, within CCNA_00710at 767.987 kb on - strand, within CCNA_00710at 767.987 kb on - strand, within CCNA_00710at 767.987 kb on - strand, within CCNA_00710at 768.001 kb on + strand, within CCNA_00710at 768.040 kb on - strand, within CCNA_00710at 768.083 kb on + strand, within CCNA_00710at 768.091 kb on - strand, within CCNA_00710at 768.101 kb on - strand, within CCNA_00710at 768.124 kb on + strand, within CCNA_00710at 768.158 kb on - strand, within CCNA_00710at 768.160 kb on - strand, within CCNA_00710at 768.211 kb on + strand, within CCNA_00710at 768.214 kb on - strand, within CCNA_00710at 768.238 kb on + strand, within CCNA_00710at 768.238 kb on + strand, within CCNA_00710at 768.241 kb on - strand, within CCNA_00710at 768.246 kb on - strand, within CCNA_00710at 768.273 kb on + strand, within CCNA_00710at 768.310 kb on + strand, within CCNA_00710at 768.342 kb on - strand, within CCNA_00710at 768.342 kb on - strand, within CCNA_00710at 768.347 kb on - strand, within CCNA_00710

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with benzoic 0.2 mg/ml
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766,260 - CCNA_00708 0.56 +0.7
766,294 - CCNA_00708 0.58 +0.7
766,404 - CCNA_00708 0.63 -0.8
766,430 - CCNA_00708 0.65 +2.7
766,491 - CCNA_00708 0.68 +1.7
766,556 + CCNA_00708 0.71 +0.7
766,564 - CCNA_00708 0.72 +1.1
766,564 - CCNA_00708 0.72 -1.5
766,564 - CCNA_00708 0.72 +1.1
766,564 - CCNA_00708 0.72 -0.8
766,580 - CCNA_00708 0.72 -0.6
766,697 - CCNA_00708 0.79 -0.1
766,718 - CCNA_00708 0.80 +0.1
766,851 - CCNA_00708 0.87 +0.1
766,873 - CCNA_00708 0.88 -0.5
767,067 - -1.2
767,078 - +2.2
767,078 - +1.2
767,119 + -1.0
767,209 - -1.1
767,220 + -1.0
767,246 + CCNA_00709 0.15 -1.0
767,264 - CCNA_00709 0.25 +0.8
767,296 + CCNA_00709 0.43 +1.2
767,322 - CCNA_00709 0.57 +1.4
767,339 + CCNA_00709 0.66 +1.2
767,371 + CCNA_00709 0.84 -1.8
767,371 + CCNA_00709 0.84 +1.1
767,371 + CCNA_00709 0.84 +0.4
767,371 + CCNA_00709 0.84 +0.1
767,373 + CCNA_00709 0.85 +0.3
767,373 + CCNA_00709 0.85 -0.2
767,373 + CCNA_00709 0.85 +2.7
767,373 + CCNA_00709 0.85 +0.9
767,373 + CCNA_00709 0.85 +2.7
767,373 + CCNA_00709 0.85 +1.7
767,373 + CCNA_00709 0.85 +3.1
767,373 + CCNA_00709 0.85 +0.6
767,373 + CCNA_00709 0.85 +1.7
767,373 + CCNA_00709 0.85 +0.8
767,379 - CCNA_00709 0.88 +2.0
767,379 - CCNA_00709 0.88 +1.4
767,381 - CCNA_00709 0.89 -0.5
767,461 - +1.1
767,496 - +1.7
767,531 + +2.4
767,537 + +0.4
767,539 - -1.0
767,545 - -1.2
767,545 - +3.3
767,576 - +0.3
767,581 - +1.8
767,583 + -0.1
767,591 - +0.4
767,598 + -0.3
767,599 + -1.8
767,606 + +0.7
767,621 - +1.8
767,645 + CCNA_00710 0.11 -2.6
767,650 + CCNA_00710 0.11 +0.7
767,653 - CCNA_00710 0.11 +0.2
767,658 - CCNA_00710 0.12 -0.5
767,689 - CCNA_00710 0.14 -0.5
767,697 + CCNA_00710 0.15 +3.4
767,713 + CCNA_00710 0.16 +0.9
767,716 - CCNA_00710 0.17 -0.1
767,773 + CCNA_00710 0.22 +0.7
767,773 + CCNA_00710 0.22 -0.3
767,801 - CCNA_00710 0.24 -0.1
767,838 + CCNA_00710 0.27 -1.8
767,843 + CCNA_00710 0.28 +1.7
767,851 - CCNA_00710 0.28 -0.8
767,851 - CCNA_00710 0.28 +0.9
767,869 + CCNA_00710 0.30 +0.1
767,870 - CCNA_00710 0.30 +0.2
767,872 - CCNA_00710 0.30 -0.3
767,872 - CCNA_00710 0.30 -0.1
767,872 - CCNA_00710 0.30 +0.7
767,942 - CCNA_00710 0.36 -1.0
767,979 + CCNA_00710 0.39 +0.3
767,979 + CCNA_00710 0.39 -1.6
767,979 + CCNA_00710 0.39 +0.7
767,979 + CCNA_00710 0.39 +1.1
767,979 + CCNA_00710 0.39 -1.8
767,979 + CCNA_00710 0.39 -0.3
767,979 + CCNA_00710 0.39 -0.5
767,987 - CCNA_00710 0.40 +0.8
767,987 - CCNA_00710 0.40 +0.7
767,987 - CCNA_00710 0.40 -0.1
767,987 - CCNA_00710 0.40 -0.9
767,987 - CCNA_00710 0.40 +1.2
767,987 - CCNA_00710 0.40 +0.4
768,001 + CCNA_00710 0.41 +1.7
768,040 - CCNA_00710 0.44 +1.7
768,083 + CCNA_00710 0.48 +1.5
768,091 - CCNA_00710 0.49 -0.9
768,101 - CCNA_00710 0.50 -0.4
768,124 + CCNA_00710 0.52 +0.5
768,158 - CCNA_00710 0.54 +0.6
768,160 - CCNA_00710 0.55 -0.2
768,211 + CCNA_00710 0.59 +0.6
768,214 - CCNA_00710 0.59 +2.7
768,238 + CCNA_00710 0.61 -0.5
768,238 + CCNA_00710 0.61 +1.1
768,241 - CCNA_00710 0.62 -0.0
768,246 - CCNA_00710 0.62 +1.7
768,273 + CCNA_00710 0.64 -0.8
768,310 + CCNA_00710 0.67 -0.8
768,342 - CCNA_00710 0.70 -1.6
768,342 - CCNA_00710 0.70 +1.1
768,347 - CCNA_00710 0.71 -0.6

Or see this region's nucleotide sequence