Experiment: PYE with benzoic 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00554 and CCNA_00555 are separated by 72 nucleotides CCNA_00555 and CCNA_00556 are separated by 84 nucleotides CCNA_00556 and CCNA_00557 overlap by 44 nucleotides CCNA_00557 and CCNA_00558 overlap by 4 nucleotides
CCNA_00554: CCNA_00554 - methyltransferase, at 570,238 to 571,044
_00554
CCNA_00555: CCNA_00555 - nitrogen regulatory protein P-II, at 571,117 to 571,461
_00555
CCNA_00556: CCNA_00556 - phospholipase D, at 571,546 to 573,063
_00556
CCNA_00557: CCNA_00557 - endonuclease/exonuclease/phosphatase family protein, at 573,020 to 573,799
_00557
CCNA_00558: CCNA_00558 - methyltransferase, at 573,796 to 574,461
_00558
Position (kb) 571
572
573
574 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 570.560 kb on - strand, within CCNA_00554 at 570.582 kb on + strand, within CCNA_00554 at 570.605 kb on - strand, within CCNA_00554 at 570.639 kb on - strand, within CCNA_00554 at 570.648 kb on + strand, within CCNA_00554 at 570.649 kb on - strand, within CCNA_00554 at 570.665 kb on + strand, within CCNA_00554 at 570.752 kb on + strand, within CCNA_00554 at 570.752 kb on + strand, within CCNA_00554 at 570.752 kb on + strand, within CCNA_00554 at 570.760 kb on - strand, within CCNA_00554 at 570.760 kb on - strand, within CCNA_00554 at 570.760 kb on - strand, within CCNA_00554 at 570.760 kb on - strand, within CCNA_00554 at 570.770 kb on - strand, within CCNA_00554 at 570.787 kb on + strand, within CCNA_00554 at 570.805 kb on - strand, within CCNA_00554 at 570.816 kb on + strand, within CCNA_00554 at 570.821 kb on + strand, within CCNA_00554 at 570.824 kb on - strand, within CCNA_00554 at 570.829 kb on - strand, within CCNA_00554 at 570.829 kb on - strand, within CCNA_00554 at 570.829 kb on - strand, within CCNA_00554 at 570.829 kb on - strand, within CCNA_00554 at 570.848 kb on + strand, within CCNA_00554 at 570.850 kb on - strand, within CCNA_00554 at 570.853 kb on + strand, within CCNA_00554 at 570.861 kb on - strand, within CCNA_00554 at 570.861 kb on - strand, within CCNA_00554 at 570.871 kb on + strand, within CCNA_00554 at 570.871 kb on + strand, within CCNA_00554 at 570.899 kb on - strand, within CCNA_00554 at 570.899 kb on - strand, within CCNA_00554 at 570.899 kb on - strand, within CCNA_00554 at 570.950 kb on - strand, within CCNA_00554 at 570.996 kb on + strand at 570.996 kb on + strand at 570.999 kb on - strand at 570.999 kb on - strand at 571.004 kb on - strand at 571.031 kb on + strand at 571.031 kb on + strand at 571.039 kb on - strand at 571.056 kb on - strand at 571.076 kb on + strand at 571.085 kb on + strand at 571.110 kb on - strand at 571.117 kb on + strand at 571.145 kb on - strand at 571.159 kb on - strand, within CCNA_00555 at 571.190 kb on + strand, within CCNA_00555 at 571.190 kb on + strand, within CCNA_00555 at 571.195 kb on + strand, within CCNA_00555 at 571.195 kb on + strand, within CCNA_00555 at 571.210 kb on - strand, within CCNA_00555 at 571.213 kb on - strand, within CCNA_00555 at 571.226 kb on + strand, within CCNA_00555 at 571.228 kb on - strand, within CCNA_00555 at 571.251 kb on + strand, within CCNA_00555 at 571.272 kb on + strand, within CCNA_00555 at 571.284 kb on + strand, within CCNA_00555 at 571.292 kb on - strand, within CCNA_00555 at 571.297 kb on - strand, within CCNA_00555 at 571.340 kb on + strand, within CCNA_00555 at 571.342 kb on + strand, within CCNA_00555 at 571.387 kb on + strand, within CCNA_00555 at 571.400 kb on + strand, within CCNA_00555 at 571.424 kb on + strand, within CCNA_00555 at 571.473 kb on + strand at 571.509 kb on - strand at 571.538 kb on + strand at 571.546 kb on - strand at 571.548 kb on + strand at 571.548 kb on + strand at 571.552 kb on - strand at 571.626 kb on + strand at 571.635 kb on - strand at 571.647 kb on - strand at 571.668 kb on + strand at 571.722 kb on + strand, within CCNA_00556 at 571.728 kb on + strand, within CCNA_00556 at 571.736 kb on - strand, within CCNA_00556 at 571.741 kb on - strand, within CCNA_00556 at 571.746 kb on - strand, within CCNA_00556 at 571.760 kb on - strand, within CCNA_00556 at 571.870 kb on + strand, within CCNA_00556 at 571.878 kb on + strand, within CCNA_00556 at 571.878 kb on + strand, within CCNA_00556 at 571.895 kb on - strand, within CCNA_00556 at 571.945 kb on + strand, within CCNA_00556 at 571.974 kb on - strand, within CCNA_00556 at 572.004 kb on + strand, within CCNA_00556 at 572.004 kb on + strand, within CCNA_00556 at 572.036 kb on + strand, within CCNA_00556 at 572.072 kb on + strand, within CCNA_00556 at 572.084 kb on - strand, within CCNA_00556 at 572.091 kb on + strand, within CCNA_00556 at 572.091 kb on + strand, within CCNA_00556 at 572.099 kb on - strand, within CCNA_00556 at 572.099 kb on - strand, within CCNA_00556 at 572.099 kb on - strand, within CCNA_00556 at 572.099 kb on - strand, within CCNA_00556 at 572.121 kb on - strand, within CCNA_00556 at 572.140 kb on + strand, within CCNA_00556 at 572.221 kb on - strand, within CCNA_00556 at 572.283 kb on + strand, within CCNA_00556 at 572.338 kb on - strand, within CCNA_00556 at 572.401 kb on - strand, within CCNA_00556 at 572.432 kb on - strand, within CCNA_00556 at 572.444 kb on + strand, within CCNA_00556 at 572.452 kb on - strand, within CCNA_00556 at 572.460 kb on + strand, within CCNA_00556 at 572.465 kb on + strand, within CCNA_00556 at 572.468 kb on - strand, within CCNA_00556 at 572.500 kb on + strand, within CCNA_00556 at 572.508 kb on - strand, within CCNA_00556 at 572.508 kb on - strand, within CCNA_00556 at 572.508 kb on - strand, within CCNA_00556 at 572.508 kb on - strand, within CCNA_00556 at 572.546 kb on - strand, within CCNA_00556 at 572.549 kb on + strand, within CCNA_00556 at 572.586 kb on + strand, within CCNA_00556 at 572.586 kb on + strand, within CCNA_00556 at 572.586 kb on + strand, within CCNA_00556 at 572.594 kb on - strand, within CCNA_00556 at 572.594 kb on - strand, within CCNA_00556 at 572.594 kb on - strand, within CCNA_00556 at 572.594 kb on - strand, within CCNA_00556 at 572.594 kb on - strand, within CCNA_00556 at 572.594 kb on - strand, within CCNA_00556 at 572.594 kb on - strand, within CCNA_00556 at 572.594 kb on - strand, within CCNA_00556 at 572.653 kb on + strand, within CCNA_00556 at 572.683 kb on + strand, within CCNA_00556 at 572.725 kb on + strand, within CCNA_00556 at 572.725 kb on + strand, within CCNA_00556 at 572.733 kb on - strand, within CCNA_00556 at 572.750 kb on - strand, within CCNA_00556 at 572.809 kb on + strand, within CCNA_00556 at 572.864 kb on + strand, within CCNA_00556 at 572.897 kb on + strand, within CCNA_00556 at 572.910 kb on - strand, within CCNA_00556 at 572.912 kb on + strand at 572.922 kb on + strand at 572.925 kb on - strand at 573.026 kb on - strand at 573.091 kb on - strand at 573.142 kb on + strand, within CCNA_00557 at 573.199 kb on - strand, within CCNA_00557 at 573.216 kb on + strand, within CCNA_00557 at 573.226 kb on + strand, within CCNA_00557 at 573.227 kb on + strand, within CCNA_00557 at 573.234 kb on + strand, within CCNA_00557 at 573.238 kb on + strand, within CCNA_00557 at 573.249 kb on - strand, within CCNA_00557 at 573.254 kb on - strand, within CCNA_00557 at 573.261 kb on + strand, within CCNA_00557 at 573.290 kb on - strand, within CCNA_00557 at 573.305 kb on - strand, within CCNA_00557 at 573.305 kb on - strand, within CCNA_00557 at 573.328 kb on + strand, within CCNA_00557 at 573.329 kb on + strand, within CCNA_00557 at 573.329 kb on + strand, within CCNA_00557 at 573.330 kb on + strand, within CCNA_00557 at 573.337 kb on - strand, within CCNA_00557 at 573.396 kb on - strand, within CCNA_00557 at 573.404 kb on + strand, within CCNA_00557 at 573.411 kb on - strand, within CCNA_00557 at 573.431 kb on - strand, within CCNA_00557 at 573.445 kb on + strand, within CCNA_00557 at 573.465 kb on + strand, within CCNA_00557 at 573.475 kb on + strand, within CCNA_00557 at 573.475 kb on + strand, within CCNA_00557 at 573.483 kb on - strand, within CCNA_00557 at 573.483 kb on - strand, within CCNA_00557 at 573.483 kb on - strand, within CCNA_00557 at 573.510 kb on + strand, within CCNA_00557 at 573.517 kb on - strand, within CCNA_00557 at 573.517 kb on - strand, within CCNA_00557 at 573.517 kb on - strand, within CCNA_00557 at 573.524 kb on + strand, within CCNA_00557 at 573.565 kb on + strand, within CCNA_00557 at 573.566 kb on - strand, within CCNA_00557 at 573.566 kb on - strand, within CCNA_00557 at 573.566 kb on - strand, within CCNA_00557 at 573.566 kb on - strand, within CCNA_00557 at 573.586 kb on - strand, within CCNA_00557 at 573.595 kb on + strand, within CCNA_00557 at 573.629 kb on - strand, within CCNA_00557 at 573.635 kb on - strand, within CCNA_00557 at 573.635 kb on - strand, within CCNA_00557 at 573.637 kb on + strand, within CCNA_00557 at 573.645 kb on - strand, within CCNA_00557 at 573.721 kb on - strand, within CCNA_00557 at 573.738 kb on + strand at 573.740 kb on - strand at 573.761 kb on + strand at 573.769 kb on - strand at 573.769 kb on - strand at 573.769 kb on - strand at 573.770 kb on + strand at 573.792 kb on + strand at 573.839 kb on - strand at 573.897 kb on + strand, within CCNA_00558 at 573.912 kb on + strand, within CCNA_00558 at 573.915 kb on - strand, within CCNA_00558 at 573.969 kb on + strand, within CCNA_00558 at 573.985 kb on - strand, within CCNA_00558 at 573.990 kb on - strand, within CCNA_00558 at 574.003 kb on - strand, within CCNA_00558 at 574.007 kb on + strand, within CCNA_00558 at 574.007 kb on + strand, within CCNA_00558 at 574.015 kb on - strand, within CCNA_00558 at 574.015 kb on - strand, within CCNA_00558 at 574.015 kb on - strand, within CCNA_00558 at 574.015 kb on - strand, within CCNA_00558 at 574.015 kb on - strand, within CCNA_00558 at 574.039 kb on + strand, within CCNA_00558 at 574.039 kb on + strand, within CCNA_00558 at 574.040 kb on + strand, within CCNA_00558 at 574.053 kb on - strand, within CCNA_00558
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with benzoic 0.2 mg/ml remove 570,560 - CCNA_00554 0.40 -1.1 570,582 + CCNA_00554 0.43 +3.2 570,605 - CCNA_00554 0.45 +2.3 570,639 - CCNA_00554 0.50 +1.0 570,648 + CCNA_00554 0.51 +2.1 570,649 - CCNA_00554 0.51 +0.4 570,665 + CCNA_00554 0.53 +2.1 570,752 + CCNA_00554 0.64 +2.1 570,752 + CCNA_00554 0.64 +2.7 570,752 + CCNA_00554 0.64 +2.1 570,760 - CCNA_00554 0.65 +0.8 570,760 - CCNA_00554 0.65 +1.3 570,760 - CCNA_00554 0.65 -0.5 570,760 - CCNA_00554 0.65 +0.6 570,770 - CCNA_00554 0.66 -0.3 570,787 + CCNA_00554 0.68 +1.4 570,805 - CCNA_00554 0.70 +2.0 570,816 + CCNA_00554 0.72 +1.1 570,821 + CCNA_00554 0.72 +3.0 570,824 - CCNA_00554 0.73 -1.3 570,829 - CCNA_00554 0.73 +0.5 570,829 - CCNA_00554 0.73 +0.8 570,829 - CCNA_00554 0.73 +1.6 570,829 - CCNA_00554 0.73 +0.9 570,848 + CCNA_00554 0.76 +3.9 570,850 - CCNA_00554 0.76 -1.0 570,853 + CCNA_00554 0.76 +1.2 570,861 - CCNA_00554 0.77 +2.5 570,861 - CCNA_00554 0.77 -0.8 570,871 + CCNA_00554 0.78 +1.6 570,871 + CCNA_00554 0.78 -0.3 570,899 - CCNA_00554 0.82 -0.4 570,899 - CCNA_00554 0.82 +0.4 570,899 - CCNA_00554 0.82 +0.2 570,950 - CCNA_00554 0.88 +0.4 570,996 + +0.3 570,996 + +1.2 570,999 - -0.0 570,999 - +2.8 571,004 - +0.9 571,031 + -0.2 571,031 + +2.5 571,039 - +0.2 571,056 - +0.5 571,076 + +1.8 571,085 + +0.8 571,110 - -0.1 571,117 + +0.9 571,145 - +1.0 571,159 - CCNA_00555 0.12 -1.0 571,190 + CCNA_00555 0.21 +1.8 571,190 + CCNA_00555 0.21 +1.5 571,195 + CCNA_00555 0.23 +1.7 571,195 + CCNA_00555 0.23 +1.1 571,210 - CCNA_00555 0.27 -0.3 571,213 - CCNA_00555 0.28 -0.4 571,226 + CCNA_00555 0.32 +1.5 571,228 - CCNA_00555 0.32 +0.5 571,251 + CCNA_00555 0.39 +2.2 571,272 + CCNA_00555 0.45 +1.1 571,284 + CCNA_00555 0.48 +1.4 571,292 - CCNA_00555 0.51 -0.7 571,297 - CCNA_00555 0.52 +3.1 571,340 + CCNA_00555 0.65 +0.8 571,342 + CCNA_00555 0.65 +2.9 571,387 + CCNA_00555 0.78 +3.5 571,400 + CCNA_00555 0.82 +2.2 571,424 + CCNA_00555 0.89 +1.9 571,473 + +0.2 571,509 - -1.0 571,538 + +2.1 571,546 - -0.3 571,548 + +1.1 571,548 + +0.5 571,552 - +0.5 571,626 + +1.0 571,635 - +2.5 571,647 - +1.5 571,668 + +1.2 571,722 + CCNA_00556 0.12 -1.2 571,728 + CCNA_00556 0.12 -0.0 571,736 - CCNA_00556 0.13 +0.5 571,741 - CCNA_00556 0.13 +1.6 571,746 - CCNA_00556 0.13 +3.0 571,760 - CCNA_00556 0.14 -0.1 571,870 + CCNA_00556 0.21 -0.1 571,878 + CCNA_00556 0.22 -0.2 571,878 + CCNA_00556 0.22 -0.2 571,895 - CCNA_00556 0.23 +1.2 571,945 + CCNA_00556 0.26 -0.2 571,974 - CCNA_00556 0.28 +1.1 572,004 + CCNA_00556 0.30 +1.3 572,004 + CCNA_00556 0.30 -0.3 572,036 + CCNA_00556 0.32 +0.9 572,072 + CCNA_00556 0.35 +1.9 572,084 - CCNA_00556 0.35 +0.8 572,091 + CCNA_00556 0.36 +0.7 572,091 + CCNA_00556 0.36 +1.5 572,099 - CCNA_00556 0.36 +1.6 572,099 - CCNA_00556 0.36 -0.1 572,099 - CCNA_00556 0.36 +2.8 572,099 - CCNA_00556 0.36 +1.5 572,121 - CCNA_00556 0.38 -0.4 572,140 + CCNA_00556 0.39 +0.8 572,221 - CCNA_00556 0.44 +2.5 572,283 + CCNA_00556 0.49 +0.9 572,338 - CCNA_00556 0.52 -0.3 572,401 - CCNA_00556 0.56 -0.4 572,432 - CCNA_00556 0.58 -0.2 572,444 + CCNA_00556 0.59 -0.3 572,452 - CCNA_00556 0.60 -0.8 572,460 + CCNA_00556 0.60 +0.1 572,465 + CCNA_00556 0.61 +1.6 572,468 - CCNA_00556 0.61 -1.4 572,500 + CCNA_00556 0.63 +1.2 572,508 - CCNA_00556 0.63 -0.7 572,508 - CCNA_00556 0.63 +0.6 572,508 - CCNA_00556 0.63 +2.8 572,508 - CCNA_00556 0.63 +0.4 572,546 - CCNA_00556 0.66 +1.5 572,549 + CCNA_00556 0.66 -0.8 572,586 + CCNA_00556 0.69 +1.5 572,586 + CCNA_00556 0.69 -0.7 572,586 + CCNA_00556 0.69 +0.5 572,594 - CCNA_00556 0.69 +1.1 572,594 - CCNA_00556 0.69 +0.8 572,594 - CCNA_00556 0.69 -0.8 572,594 - CCNA_00556 0.69 +0.8 572,594 - CCNA_00556 0.69 -1.7 572,594 - CCNA_00556 0.69 +2.1 572,594 - CCNA_00556 0.69 +0.6 572,594 - CCNA_00556 0.69 -1.2 572,653 + CCNA_00556 0.73 +1.0 572,683 + CCNA_00556 0.75 -1.8 572,725 + CCNA_00556 0.78 +2.0 572,725 + CCNA_00556 0.78 -1.7 572,733 - CCNA_00556 0.78 -2.4 572,750 - CCNA_00556 0.79 -1.0 572,809 + CCNA_00556 0.83 +0.9 572,864 + CCNA_00556 0.87 +0.0 572,897 + CCNA_00556 0.89 -1.4 572,910 - CCNA_00556 0.90 +0.5 572,912 + -0.4 572,922 + +0.4 572,925 - -0.7 573,026 - +0.6 573,091 - +1.0 573,142 + CCNA_00557 0.16 -0.5 573,199 - CCNA_00557 0.23 -0.4 573,216 + CCNA_00557 0.25 -1.4 573,226 + CCNA_00557 0.26 +2.5 573,227 + CCNA_00557 0.27 -0.5 573,234 + CCNA_00557 0.27 -1.6 573,238 + CCNA_00557 0.28 +0.4 573,249 - CCNA_00557 0.29 -0.5 573,254 - CCNA_00557 0.30 -1.3 573,261 + CCNA_00557 0.31 -1.1 573,290 - CCNA_00557 0.35 +2.5 573,305 - CCNA_00557 0.37 +0.3 573,305 - CCNA_00557 0.37 +0.9 573,328 + CCNA_00557 0.39 -0.5 573,329 + CCNA_00557 0.40 +2.5 573,329 + CCNA_00557 0.40 +1.9 573,330 + CCNA_00557 0.40 +0.1 573,337 - CCNA_00557 0.41 +0.0 573,396 - CCNA_00557 0.48 +2.2 573,404 + CCNA_00557 0.49 -0.9 573,411 - CCNA_00557 0.50 -2.1 573,431 - CCNA_00557 0.53 +2.3 573,445 + CCNA_00557 0.54 +1.5 573,465 + CCNA_00557 0.57 +0.9 573,475 + CCNA_00557 0.58 +0.1 573,475 + CCNA_00557 0.58 +0.5 573,483 - CCNA_00557 0.59 -0.5 573,483 - CCNA_00557 0.59 +1.5 573,483 - CCNA_00557 0.59 +0.3 573,510 + CCNA_00557 0.63 +1.5 573,517 - CCNA_00557 0.64 -0.2 573,517 - CCNA_00557 0.64 +0.7 573,517 - CCNA_00557 0.64 +1.5 573,524 + CCNA_00557 0.65 +1.7 573,565 + CCNA_00557 0.70 +0.1 573,566 - CCNA_00557 0.70 +0.9 573,566 - CCNA_00557 0.70 +1.1 573,566 - CCNA_00557 0.70 -0.3 573,566 - CCNA_00557 0.70 +1.3 573,586 - CCNA_00557 0.73 +0.9 573,595 + CCNA_00557 0.74 -3.3 573,629 - CCNA_00557 0.78 +1.1 573,635 - CCNA_00557 0.79 -0.1 573,635 - CCNA_00557 0.79 +2.0 573,637 + CCNA_00557 0.79 -1.1 573,645 - CCNA_00557 0.80 +0.6 573,721 - CCNA_00557 0.90 +2.0 573,738 + +0.7 573,740 - +0.2 573,761 + +0.9 573,769 - +1.5 573,769 - +0.7 573,769 - +0.2 573,770 + +2.0 573,792 + -1.4 573,839 - +1.0 573,897 + CCNA_00558 0.15 +1.1 573,912 + CCNA_00558 0.17 +0.4 573,915 - CCNA_00558 0.18 +0.9 573,969 + CCNA_00558 0.26 +0.5 573,985 - CCNA_00558 0.28 -0.9 573,990 - CCNA_00558 0.29 +0.1 574,003 - CCNA_00558 0.31 +0.9 574,007 + CCNA_00558 0.32 +0.5 574,007 + CCNA_00558 0.32 +0.4 574,015 - CCNA_00558 0.33 +1.4 574,015 - CCNA_00558 0.33 +2.5 574,015 - CCNA_00558 0.33 +0.7 574,015 - CCNA_00558 0.33 +1.7 574,015 - CCNA_00558 0.33 +0.5 574,039 + CCNA_00558 0.36 -1.1 574,039 + CCNA_00558 0.36 +0.9 574,040 + CCNA_00558 0.37 -1.3 574,053 - CCNA_00558 0.39 -0.3
Or see this region's nucleotide sequence