Experiment: PYE with benzoic 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00551 and CCNA_00552 are separated by 255 nucleotides CCNA_00552 and CCNA_00553 overlap by 4 nucleotides CCNA_00553 and CCNA_00554 are separated by 65 nucleotides CCNA_00554 and CCNA_00555 are separated by 72 nucleotides
CCNA_00551: CCNA_00551 - hypothetical protein, at 568,260 to 568,700
_00551
CCNA_00552: CCNA_00552 - cupin superfamily protein, at 568,956 to 569,426
_00552
CCNA_00553: CCNA_00553 - hydroxyacylglutathione hydrolase, at 569,423 to 570,172
_00553
CCNA_00554: CCNA_00554 - methyltransferase, at 570,238 to 571,044
_00554
CCNA_00555: CCNA_00555 - nitrogen regulatory protein P-II, at 571,117 to 571,461
_00555
Position (kb) 569
570
571 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 568.510 kb on + strand, within CCNA_00551 at 568.518 kb on - strand, within CCNA_00551 at 568.567 kb on + strand, within CCNA_00551 at 568.576 kb on + strand, within CCNA_00551 at 568.583 kb on + strand, within CCNA_00551 at 568.601 kb on + strand, within CCNA_00551 at 568.601 kb on + strand, within CCNA_00551 at 568.601 kb on + strand, within CCNA_00551 at 568.601 kb on + strand, within CCNA_00551 at 568.609 kb on - strand, within CCNA_00551 at 568.609 kb on - strand, within CCNA_00551 at 568.609 kb on - strand, within CCNA_00551 at 568.609 kb on - strand, within CCNA_00551 at 568.616 kb on - strand, within CCNA_00551 at 568.636 kb on - strand, within CCNA_00551 at 568.636 kb on - strand, within CCNA_00551 at 568.641 kb on - strand, within CCNA_00551 at 568.651 kb on - strand, within CCNA_00551 at 568.651 kb on - strand, within CCNA_00551 at 568.691 kb on + strand at 568.691 kb on + strand at 568.691 kb on - strand at 568.699 kb on - strand at 568.758 kb on - strand at 568.785 kb on + strand at 568.803 kb on - strand at 568.826 kb on + strand at 568.834 kb on - strand at 568.849 kb on + strand at 568.849 kb on - strand at 568.869 kb on - strand at 568.872 kb on + strand at 568.880 kb on - strand at 568.882 kb on - strand at 568.884 kb on + strand at 568.888 kb on + strand at 568.888 kb on + strand at 568.888 kb on + strand at 568.888 kb on + strand at 568.908 kb on + strand at 568.921 kb on - strand at 569.005 kb on + strand, within CCNA_00552 at 569.008 kb on - strand, within CCNA_00552 at 569.039 kb on - strand, within CCNA_00552 at 569.050 kb on + strand, within CCNA_00552 at 569.063 kb on - strand, within CCNA_00552 at 569.073 kb on + strand, within CCNA_00552 at 569.096 kb on - strand, within CCNA_00552 at 569.117 kb on + strand, within CCNA_00552 at 569.117 kb on + strand, within CCNA_00552 at 569.117 kb on + strand, within CCNA_00552 at 569.125 kb on - strand, within CCNA_00552 at 569.132 kb on - strand, within CCNA_00552 at 569.140 kb on - strand, within CCNA_00552 at 569.154 kb on - strand, within CCNA_00552 at 569.191 kb on + strand, within CCNA_00552 at 569.191 kb on + strand, within CCNA_00552 at 569.213 kb on - strand, within CCNA_00552 at 569.213 kb on - strand, within CCNA_00552 at 569.223 kb on - strand, within CCNA_00552 at 569.226 kb on + strand, within CCNA_00552 at 569.234 kb on - strand, within CCNA_00552 at 569.248 kb on + strand, within CCNA_00552 at 569.248 kb on + strand, within CCNA_00552 at 569.256 kb on - strand, within CCNA_00552 at 569.279 kb on - strand, within CCNA_00552 at 569.306 kb on + strand, within CCNA_00552 at 569.306 kb on + strand, within CCNA_00552 at 569.313 kb on + strand, within CCNA_00552 at 569.329 kb on - strand, within CCNA_00552 at 569.329 kb on - strand, within CCNA_00552 at 569.330 kb on - strand, within CCNA_00552 at 569.351 kb on + strand, within CCNA_00552 at 569.396 kb on + strand at 569.402 kb on + strand at 569.404 kb on - strand at 569.410 kb on - strand at 569.436 kb on - strand at 569.438 kb on + strand at 569.438 kb on + strand at 569.438 kb on + strand at 569.438 kb on + strand at 569.438 kb on + strand at 569.446 kb on - strand at 569.446 kb on - strand at 569.446 kb on - strand at 569.589 kb on + strand, within CCNA_00553 at 569.589 kb on + strand, within CCNA_00553 at 569.589 kb on + strand, within CCNA_00553 at 569.589 kb on + strand, within CCNA_00553 at 569.597 kb on - strand, within CCNA_00553 at 569.597 kb on - strand, within CCNA_00553 at 569.619 kb on - strand, within CCNA_00553 at 569.655 kb on + strand, within CCNA_00553 at 569.663 kb on - strand, within CCNA_00553 at 569.663 kb on - strand, within CCNA_00553 at 569.747 kb on - strand, within CCNA_00553 at 569.767 kb on - strand, within CCNA_00553 at 569.767 kb on - strand, within CCNA_00553 at 569.824 kb on + strand, within CCNA_00553 at 569.832 kb on - strand, within CCNA_00553 at 569.832 kb on - strand, within CCNA_00553 at 569.854 kb on - strand, within CCNA_00553 at 569.874 kb on + strand, within CCNA_00553 at 569.890 kb on - strand, within CCNA_00553 at 569.904 kb on - strand, within CCNA_00553 at 569.906 kb on + strand, within CCNA_00553 at 569.945 kb on - strand, within CCNA_00553 at 569.947 kb on - strand, within CCNA_00553 at 570.001 kb on + strand, within CCNA_00553 at 570.083 kb on - strand, within CCNA_00553 at 570.134 kb on + strand at 570.136 kb on + strand at 570.157 kb on - strand at 570.175 kb on - strand at 570.198 kb on + strand at 570.203 kb on + strand at 570.203 kb on + strand at 570.203 kb on + strand at 570.222 kb on + strand at 570.257 kb on + strand at 570.276 kb on - strand at 570.285 kb on + strand at 570.285 kb on + strand at 570.295 kb on + strand at 570.300 kb on + strand at 570.318 kb on + strand at 570.327 kb on + strand, within CCNA_00554 at 570.327 kb on + strand, within CCNA_00554 at 570.327 kb on + strand, within CCNA_00554 at 570.327 kb on + strand, within CCNA_00554 at 570.335 kb on - strand, within CCNA_00554 at 570.335 kb on - strand, within CCNA_00554 at 570.335 kb on - strand, within CCNA_00554 at 570.335 kb on - strand, within CCNA_00554 at 570.361 kb on + strand, within CCNA_00554 at 570.369 kb on - strand, within CCNA_00554 at 570.369 kb on - strand, within CCNA_00554 at 570.441 kb on - strand, within CCNA_00554 at 570.493 kb on + strand, within CCNA_00554 at 570.560 kb on - strand, within CCNA_00554 at 570.582 kb on + strand, within CCNA_00554 at 570.605 kb on - strand, within CCNA_00554 at 570.639 kb on - strand, within CCNA_00554 at 570.648 kb on + strand, within CCNA_00554 at 570.649 kb on - strand, within CCNA_00554 at 570.665 kb on + strand, within CCNA_00554 at 570.752 kb on + strand, within CCNA_00554 at 570.752 kb on + strand, within CCNA_00554 at 570.752 kb on + strand, within CCNA_00554 at 570.760 kb on - strand, within CCNA_00554 at 570.760 kb on - strand, within CCNA_00554 at 570.760 kb on - strand, within CCNA_00554 at 570.760 kb on - strand, within CCNA_00554 at 570.770 kb on - strand, within CCNA_00554 at 570.787 kb on + strand, within CCNA_00554 at 570.805 kb on - strand, within CCNA_00554 at 570.816 kb on + strand, within CCNA_00554 at 570.821 kb on + strand, within CCNA_00554 at 570.824 kb on - strand, within CCNA_00554 at 570.829 kb on - strand, within CCNA_00554 at 570.829 kb on - strand, within CCNA_00554 at 570.829 kb on - strand, within CCNA_00554 at 570.829 kb on - strand, within CCNA_00554 at 570.848 kb on + strand, within CCNA_00554 at 570.850 kb on - strand, within CCNA_00554 at 570.853 kb on + strand, within CCNA_00554 at 570.861 kb on - strand, within CCNA_00554 at 570.861 kb on - strand, within CCNA_00554 at 570.871 kb on + strand, within CCNA_00554 at 570.871 kb on + strand, within CCNA_00554 at 570.899 kb on - strand, within CCNA_00554 at 570.899 kb on - strand, within CCNA_00554 at 570.899 kb on - strand, within CCNA_00554 at 570.950 kb on - strand, within CCNA_00554 at 570.996 kb on + strand at 570.996 kb on + strand at 570.999 kb on - strand at 570.999 kb on - strand at 571.004 kb on - strand at 571.031 kb on + strand at 571.031 kb on + strand at 571.039 kb on - strand at 571.056 kb on - strand at 571.076 kb on + strand at 571.085 kb on + strand at 571.110 kb on - strand at 571.117 kb on + strand at 571.145 kb on - strand at 571.159 kb on - strand, within CCNA_00555
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with benzoic 0.2 mg/ml remove 568,510 + CCNA_00551 0.57 +0.7 568,518 - CCNA_00551 0.59 +1.2 568,567 + CCNA_00551 0.70 +0.8 568,576 + CCNA_00551 0.72 +1.8 568,583 + CCNA_00551 0.73 -1.2 568,601 + CCNA_00551 0.77 +2.1 568,601 + CCNA_00551 0.77 +0.9 568,601 + CCNA_00551 0.77 +0.9 568,601 + CCNA_00551 0.77 -0.1 568,609 - CCNA_00551 0.79 -1.1 568,609 - CCNA_00551 0.79 -0.7 568,609 - CCNA_00551 0.79 +0.8 568,609 - CCNA_00551 0.79 +1.3 568,616 - CCNA_00551 0.81 +0.6 568,636 - CCNA_00551 0.85 +1.1 568,636 - CCNA_00551 0.85 +0.1 568,641 - CCNA_00551 0.86 +0.5 568,651 - CCNA_00551 0.89 +1.4 568,651 - CCNA_00551 0.89 -0.9 568,691 + -1.7 568,691 + +0.9 568,691 - -0.4 568,699 - +0.5 568,758 - +0.1 568,785 + -1.4 568,803 - -0.1 568,826 + +0.1 568,834 - -1.7 568,849 + +0.7 568,849 - +1.1 568,869 - -0.1 568,872 + +0.1 568,880 - -0.5 568,882 - -2.2 568,884 + -0.3 568,888 + +1.3 568,888 + -2.3 568,888 + +0.7 568,888 + -1.5 568,908 + -0.3 568,921 - -0.8 569,005 + CCNA_00552 0.10 +0.5 569,008 - CCNA_00552 0.11 -0.6 569,039 - CCNA_00552 0.18 +1.9 569,050 + CCNA_00552 0.20 +1.0 569,063 - CCNA_00552 0.23 +1.9 569,073 + CCNA_00552 0.25 -0.5 569,096 - CCNA_00552 0.30 +0.2 569,117 + CCNA_00552 0.34 +0.9 569,117 + CCNA_00552 0.34 +0.6 569,117 + CCNA_00552 0.34 +0.2 569,125 - CCNA_00552 0.36 +0.1 569,132 - CCNA_00552 0.37 +1.5 569,140 - CCNA_00552 0.39 -0.2 569,154 - CCNA_00552 0.42 +1.5 569,191 + CCNA_00552 0.50 -0.7 569,191 + CCNA_00552 0.50 -0.5 569,213 - CCNA_00552 0.55 +0.9 569,213 - CCNA_00552 0.55 +1.0 569,223 - CCNA_00552 0.57 +0.6 569,226 + CCNA_00552 0.57 -0.8 569,234 - CCNA_00552 0.59 +1.2 569,248 + CCNA_00552 0.62 +0.5 569,248 + CCNA_00552 0.62 +2.5 569,256 - CCNA_00552 0.64 -2.3 569,279 - CCNA_00552 0.69 +0.1 569,306 + CCNA_00552 0.74 +1.6 569,306 + CCNA_00552 0.74 -1.4 569,313 + CCNA_00552 0.76 +1.3 569,329 - CCNA_00552 0.79 +1.3 569,329 - CCNA_00552 0.79 +2.2 569,330 - CCNA_00552 0.79 +1.5 569,351 + CCNA_00552 0.84 -0.3 569,396 + +0.5 569,402 + +0.9 569,404 - -0.6 569,410 - +0.5 569,436 - -0.2 569,438 + -2.0 569,438 + +0.1 569,438 + -0.9 569,438 + -0.0 569,438 + +0.5 569,446 - +1.1 569,446 - +1.6 569,446 - -0.8 569,589 + CCNA_00553 0.22 -1.0 569,589 + CCNA_00553 0.22 +0.5 569,589 + CCNA_00553 0.22 -0.8 569,589 + CCNA_00553 0.22 -1.1 569,597 - CCNA_00553 0.23 +0.8 569,597 - CCNA_00553 0.23 +1.0 569,619 - CCNA_00553 0.26 +3.1 569,655 + CCNA_00553 0.31 -1.3 569,663 - CCNA_00553 0.32 +0.2 569,663 - CCNA_00553 0.32 -0.1 569,747 - CCNA_00553 0.43 -0.7 569,767 - CCNA_00553 0.46 +1.9 569,767 - CCNA_00553 0.46 -0.4 569,824 + CCNA_00553 0.53 -0.8 569,832 - CCNA_00553 0.55 -1.1 569,832 - CCNA_00553 0.55 +1.5 569,854 - CCNA_00553 0.57 +0.7 569,874 + CCNA_00553 0.60 -0.9 569,890 - CCNA_00553 0.62 +1.2 569,904 - CCNA_00553 0.64 +2.9 569,906 + CCNA_00553 0.64 +0.6 569,945 - CCNA_00553 0.70 -0.1 569,947 - CCNA_00553 0.70 +1.5 570,001 + CCNA_00553 0.77 -1.1 570,083 - CCNA_00553 0.88 -1.5 570,134 + -0.5 570,136 + +2.5 570,157 - +0.5 570,175 - -0.4 570,198 + +0.2 570,203 + +0.3 570,203 + +0.6 570,203 + +1.1 570,222 + -0.7 570,257 + +2.1 570,276 - +1.8 570,285 + +1.9 570,285 + +3.1 570,295 + +2.2 570,300 + +1.9 570,318 + +2.8 570,327 + CCNA_00554 0.11 +2.3 570,327 + CCNA_00554 0.11 +3.5 570,327 + CCNA_00554 0.11 +2.7 570,327 + CCNA_00554 0.11 +2.4 570,335 - CCNA_00554 0.12 +0.4 570,335 - CCNA_00554 0.12 -0.5 570,335 - CCNA_00554 0.12 +0.9 570,335 - CCNA_00554 0.12 +0.5 570,361 + CCNA_00554 0.15 +0.9 570,369 - CCNA_00554 0.16 +1.1 570,369 - CCNA_00554 0.16 +1.2 570,441 - CCNA_00554 0.25 +0.7 570,493 + CCNA_00554 0.32 +2.7 570,560 - CCNA_00554 0.40 -1.1 570,582 + CCNA_00554 0.43 +3.2 570,605 - CCNA_00554 0.45 +2.3 570,639 - CCNA_00554 0.50 +1.0 570,648 + CCNA_00554 0.51 +2.1 570,649 - CCNA_00554 0.51 +0.4 570,665 + CCNA_00554 0.53 +2.1 570,752 + CCNA_00554 0.64 +2.1 570,752 + CCNA_00554 0.64 +2.7 570,752 + CCNA_00554 0.64 +2.1 570,760 - CCNA_00554 0.65 +0.8 570,760 - CCNA_00554 0.65 +1.3 570,760 - CCNA_00554 0.65 -0.5 570,760 - CCNA_00554 0.65 +0.6 570,770 - CCNA_00554 0.66 -0.3 570,787 + CCNA_00554 0.68 +1.4 570,805 - CCNA_00554 0.70 +2.0 570,816 + CCNA_00554 0.72 +1.1 570,821 + CCNA_00554 0.72 +3.0 570,824 - CCNA_00554 0.73 -1.3 570,829 - CCNA_00554 0.73 +0.5 570,829 - CCNA_00554 0.73 +0.8 570,829 - CCNA_00554 0.73 +1.6 570,829 - CCNA_00554 0.73 +0.9 570,848 + CCNA_00554 0.76 +3.9 570,850 - CCNA_00554 0.76 -1.0 570,853 + CCNA_00554 0.76 +1.2 570,861 - CCNA_00554 0.77 +2.5 570,861 - CCNA_00554 0.77 -0.8 570,871 + CCNA_00554 0.78 +1.6 570,871 + CCNA_00554 0.78 -0.3 570,899 - CCNA_00554 0.82 -0.4 570,899 - CCNA_00554 0.82 +0.4 570,899 - CCNA_00554 0.82 +0.2 570,950 - CCNA_00554 0.88 +0.4 570,996 + +0.3 570,996 + +1.2 570,999 - -0.0 570,999 - +2.8 571,004 - +0.9 571,031 + -0.2 571,031 + +2.5 571,039 - +0.2 571,056 - +0.5 571,076 + +1.8 571,085 + +0.8 571,110 - -0.1 571,117 + +0.9 571,145 - +1.0 571,159 - CCNA_00555 0.12 -1.0
Or see this region's nucleotide sequence