Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00376

Experiment: PYE with benzoic 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00374 and CCNA_00375 are separated by 421 nucleotidesCCNA_00375 and CCNA_00376 are separated by 70 nucleotidesCCNA_00376 and CCNA_00377 are separated by 114 nucleotides CCNA_00374: CCNA_00374 - putative ATP synthase protein I, at 389,797 to 390,177 _00374 CCNA_00375: CCNA_00375 - hypothetical protein, at 390,599 to 390,988 _00375 CCNA_00376: CCNA_00376 - putative membrane spanning protein, at 391,059 to 391,838 _00376 CCNA_00377: CCNA_00377 - chromosome partition protein Smc, at 391,953 to 395,396 _00377 Position (kb) 391 392Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 390.175 kb on - strandat 390.175 kb on - strandat 390.175 kb on - strandat 390.274 kb on + strandat 390.274 kb on + strandat 390.274 kb on + strandat 390.274 kb on + strandat 390.274 kb on + strandat 390.274 kb on + strandat 390.274 kb on + strandat 390.282 kb on - strandat 390.282 kb on - strandat 390.282 kb on - strandat 390.282 kb on - strandat 390.282 kb on - strandat 390.282 kb on - strandat 390.282 kb on - strandat 390.282 kb on - strandat 390.282 kb on - strandat 390.282 kb on - strandat 390.352 kb on - strandat 390.377 kb on - strandat 390.391 kb on + strandat 390.399 kb on + strandat 390.424 kb on - strandat 390.426 kb on + strandat 390.490 kb on + strandat 390.507 kb on + strandat 390.577 kb on + strandat 390.577 kb on + strandat 390.661 kb on - strand, within CCNA_00375at 390.676 kb on + strandat 390.676 kb on + strand, within CCNA_00375at 390.676 kb on + strand, within CCNA_00375at 390.684 kb on - strand, within CCNA_00375at 390.703 kb on - strand, within CCNA_00375at 390.774 kb on - strand, within CCNA_00375at 390.869 kb on + strand, within CCNA_00375at 390.877 kb on + strand, within CCNA_00375at 390.924 kb on + strand, within CCNA_00375at 390.937 kb on + strand, within CCNA_00375at 390.947 kb on - strand, within CCNA_00375at 391.000 kb on - strandat 391.064 kb on - strandat 391.068 kb on + strandat 391.074 kb on - strandat 391.125 kb on + strandat 391.171 kb on - strand, within CCNA_00376at 391.186 kb on + strand, within CCNA_00376at 391.188 kb on - strand, within CCNA_00376at 391.220 kb on + strand, within CCNA_00376at 391.232 kb on + strand, within CCNA_00376at 391.240 kb on - strand, within CCNA_00376at 391.281 kb on + strand, within CCNA_00376at 391.294 kb on - strand, within CCNA_00376at 391.366 kb on + strand, within CCNA_00376at 391.385 kb on + strand, within CCNA_00376at 391.435 kb on + strand, within CCNA_00376at 391.441 kb on - strand, within CCNA_00376at 391.457 kb on + strand, within CCNA_00376at 391.482 kb on + strand, within CCNA_00376at 391.516 kb on - strand, within CCNA_00376at 391.539 kb on + strand, within CCNA_00376at 391.559 kb on + strand, within CCNA_00376at 391.606 kb on - strand, within CCNA_00376at 391.624 kb on + strand, within CCNA_00376at 391.624 kb on + strand, within CCNA_00376at 391.624 kb on + strand, within CCNA_00376at 391.624 kb on + strand, within CCNA_00376at 391.624 kb on + strand, within CCNA_00376at 391.624 kb on + strand, within CCNA_00376at 391.624 kb on + strand, within CCNA_00376at 391.624 kb on + strand, within CCNA_00376at 391.626 kb on + strand, within CCNA_00376at 391.632 kb on - strand, within CCNA_00376at 391.632 kb on - strand, within CCNA_00376at 391.632 kb on - strand, within CCNA_00376at 391.632 kb on - strand, within CCNA_00376at 391.632 kb on - strand, within CCNA_00376at 391.632 kb on - strand, within CCNA_00376at 391.632 kb on - strand, within CCNA_00376at 391.632 kb on - strand, within CCNA_00376at 391.634 kb on + strand, within CCNA_00376at 391.663 kb on - strand, within CCNA_00376at 391.673 kb on + strand, within CCNA_00376at 391.673 kb on + strand, within CCNA_00376at 391.681 kb on - strand, within CCNA_00376at 391.681 kb on - strand, within CCNA_00376at 391.716 kb on + strand, within CCNA_00376at 391.722 kb on + strand, within CCNA_00376at 391.730 kb on + strand, within CCNA_00376at 391.735 kb on + strand, within CCNA_00376at 391.738 kb on - strand, within CCNA_00376at 391.738 kb on - strand, within CCNA_00376at 391.768 kb on - strandat 391.832 kb on - strandat 391.878 kb on + strandat 391.896 kb on - strandat 391.907 kb on - strandat 391.935 kb on + strandat 391.980 kb on + strandat 391.980 kb on + strandat 391.993 kb on - strandat 391.993 kb on - strandat 391.993 kb on - strandat 391.993 kb on - strandat 391.993 kb on - strandat 392.003 kb on - strandat 392.020 kb on + strandat 392.020 kb on + strandat 392.052 kb on + strandat 392.067 kb on + strandat 392.110 kb on + strandat 392.148 kb on - strandat 392.179 kb on + strandat 392.233 kb on + strandat 392.256 kb on + strandat 392.261 kb on + strandat 392.261 kb on + strandat 392.264 kb on - strandat 392.269 kb on - strandat 392.271 kb on + strandat 392.324 kb on + strand, within CCNA_00377at 392.357 kb on + strand, within CCNA_00377at 392.362 kb on + strand, within CCNA_00377at 392.370 kb on - strand, within CCNA_00377at 392.370 kb on - strand, within CCNA_00377at 392.374 kb on + strand, within CCNA_00377at 392.375 kb on + strand, within CCNA_00377at 392.376 kb on + strand, within CCNA_00377at 392.386 kb on + strand, within CCNA_00377at 392.427 kb on - strand, within CCNA_00377at 392.427 kb on - strand, within CCNA_00377at 392.443 kb on + strand, within CCNA_00377at 392.451 kb on - strand, within CCNA_00377at 392.451 kb on - strand, within CCNA_00377at 392.451 kb on - strand, within CCNA_00377at 392.453 kb on + strand, within CCNA_00377at 392.461 kb on - strand, within CCNA_00377at 392.527 kb on - strand, within CCNA_00377at 392.530 kb on + strand, within CCNA_00377at 392.570 kb on + strand, within CCNA_00377at 392.599 kb on + strand, within CCNA_00377at 392.599 kb on + strand, within CCNA_00377at 392.611 kb on + strand, within CCNA_00377at 392.618 kb on - strand, within CCNA_00377at 392.641 kb on + strand, within CCNA_00377at 392.670 kb on - strand, within CCNA_00377at 392.740 kb on - strand, within CCNA_00377at 392.750 kb on - strand, within CCNA_00377at 392.754 kb on + strand, within CCNA_00377at 392.754 kb on + strand, within CCNA_00377at 392.754 kb on + strand, within CCNA_00377at 392.762 kb on - strand, within CCNA_00377at 392.762 kb on - strand, within CCNA_00377

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with benzoic 0.2 mg/ml
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390,175 - -0.4
390,175 - +3.1
390,175 - +2.4
390,274 + +1.1
390,274 + -0.7
390,274 + -0.3
390,274 + -0.5
390,274 + -1.1
390,274 + -0.9
390,274 + +1.1
390,282 - -0.5
390,282 - +0.2
390,282 - +0.5
390,282 - -0.2
390,282 - -0.4
390,282 - +0.5
390,282 - -1.2
390,282 - -0.2
390,282 - -0.2
390,282 - -0.7
390,352 - -2.0
390,377 - +0.1
390,391 + -2.4
390,399 + -0.9
390,424 - -0.9
390,426 + -0.2
390,490 + -0.2
390,507 + -1.0
390,577 + +2.0
390,577 + +2.4
390,661 - CCNA_00375 0.16 +1.1
390,676 + +4.1
390,676 + CCNA_00375 0.20 +2.4
390,676 + CCNA_00375 0.20 +2.0
390,684 - CCNA_00375 0.22 -0.2
390,703 - CCNA_00375 0.27 -1.1
390,774 - CCNA_00375 0.45 -0.7
390,869 + CCNA_00375 0.69 +2.5
390,877 + CCNA_00375 0.71 +2.3
390,924 + CCNA_00375 0.83 +3.1
390,937 + CCNA_00375 0.87 +2.1
390,947 - CCNA_00375 0.89 +1.1
391,000 - -1.1
391,064 - +0.1
391,068 + +1.5
391,074 - -1.5
391,125 + +1.3
391,171 - CCNA_00376 0.14 -0.8
391,186 + CCNA_00376 0.16 +2.6
391,188 - CCNA_00376 0.17 -2.6
391,220 + CCNA_00376 0.21 +1.4
391,232 + CCNA_00376 0.22 -0.3
391,240 - CCNA_00376 0.23 +0.8
391,281 + CCNA_00376 0.28 -2.4
391,294 - CCNA_00376 0.30 -0.2
391,366 + CCNA_00376 0.39 +1.2
391,385 + CCNA_00376 0.42 -0.6
391,435 + CCNA_00376 0.48 -1.5
391,441 - CCNA_00376 0.49 -0.2
391,457 + CCNA_00376 0.51 +0.5
391,482 + CCNA_00376 0.54 +2.1
391,516 - CCNA_00376 0.59 +1.1
391,539 + CCNA_00376 0.62 -0.3
391,559 + CCNA_00376 0.64 +0.9
391,606 - CCNA_00376 0.70 -1.0
391,624 + CCNA_00376 0.72 +1.0
391,624 + CCNA_00376 0.72 +0.7
391,624 + CCNA_00376 0.72 +0.4
391,624 + CCNA_00376 0.72 +1.1
391,624 + CCNA_00376 0.72 +1.7
391,624 + CCNA_00376 0.72 +1.2
391,624 + CCNA_00376 0.72 +1.7
391,624 + CCNA_00376 0.72 +3.4
391,626 + CCNA_00376 0.73 +0.8
391,632 - CCNA_00376 0.73 -1.3
391,632 - CCNA_00376 0.73 +2.1
391,632 - CCNA_00376 0.73 -0.6
391,632 - CCNA_00376 0.73 -0.0
391,632 - CCNA_00376 0.73 +0.1
391,632 - CCNA_00376 0.73 +1.1
391,632 - CCNA_00376 0.73 -0.9
391,632 - CCNA_00376 0.73 -1.5
391,634 + CCNA_00376 0.74 +0.2
391,663 - CCNA_00376 0.77 -1.8
391,673 + CCNA_00376 0.79 -0.5
391,673 + CCNA_00376 0.79 +0.7
391,681 - CCNA_00376 0.80 +0.1
391,681 - CCNA_00376 0.80 -0.7
391,716 + CCNA_00376 0.84 +1.1
391,722 + CCNA_00376 0.85 +1.2
391,730 + CCNA_00376 0.86 +0.4
391,735 + CCNA_00376 0.87 +2.1
391,738 - CCNA_00376 0.87 -0.2
391,738 - CCNA_00376 0.87 -1.7
391,768 - -0.7
391,832 - +0.1
391,878 + +2.1
391,896 - -0.8
391,907 - +0.6
391,935 + +0.7
391,980 + +2.1
391,980 + -0.8
391,993 - +0.1
391,993 - +1.3
391,993 - +2.8
391,993 - +1.1
391,993 - +0.8
392,003 - +0.8
392,020 + -1.1
392,020 + -0.2
392,052 + +1.1
392,067 + -1.4
392,110 + -0.9
392,148 - +1.9
392,179 + +2.1
392,233 + +0.6
392,256 + -0.6
392,261 + -0.2
392,261 + -0.6
392,264 - +0.5
392,269 - +0.1
392,271 + +0.8
392,324 + CCNA_00377 0.11 +1.1
392,357 + CCNA_00377 0.12 -0.2
392,362 + CCNA_00377 0.12 -1.5
392,370 - CCNA_00377 0.12 +0.4
392,370 - CCNA_00377 0.12 +0.8
392,374 + CCNA_00377 0.12 +0.7
392,375 + CCNA_00377 0.12 +2.1
392,376 + CCNA_00377 0.12 -0.0
392,386 + CCNA_00377 0.13 -1.6
392,427 - CCNA_00377 0.14 +2.1
392,427 - CCNA_00377 0.14 -1.8
392,443 + CCNA_00377 0.14 +0.7
392,451 - CCNA_00377 0.14 -0.3
392,451 - CCNA_00377 0.14 +1.9
392,451 - CCNA_00377 0.14 -0.6
392,453 + CCNA_00377 0.15 -2.4
392,461 - CCNA_00377 0.15 +0.0
392,527 - CCNA_00377 0.17 +0.8
392,530 + CCNA_00377 0.17 +0.5
392,570 + CCNA_00377 0.18 +2.8
392,599 + CCNA_00377 0.19 +0.6
392,599 + CCNA_00377 0.19 +1.0
392,611 + CCNA_00377 0.19 +0.5
392,618 - CCNA_00377 0.19 -0.4
392,641 + CCNA_00377 0.20 -2.0
392,670 - CCNA_00377 0.21 -0.3
392,740 - CCNA_00377 0.23 +1.0
392,750 - CCNA_00377 0.23 +0.3
392,754 + CCNA_00377 0.23 +0.6
392,754 + CCNA_00377 0.23 +0.1
392,754 + CCNA_00377 0.23 +0.1
392,762 - CCNA_00377 0.23 +2.9
392,762 - CCNA_00377 0.23 +0.8

Or see this region's nucleotide sequence