Experiment: Rifampicin 0.0024 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_30225 and AO356_30230 are separated by 16 nucleotides AO356_30230 and AO356_30235 are separated by 189 nucleotides AO356_30235 and AO356_30240 are separated by 315 nucleotides
AO356_30225: AO356_30225 - choline dehydrogenase, at 7,055,146 to 7,056,786
_30225
AO356_30230: AO356_30230 - transmembrane reductase oxidoreductase, at 7,056,803 to 7,057,477
_30230
AO356_30235: AO356_30235 - LysR family transcriptional regulator, at 7,057,667 to 7,058,560
_30235
AO356_30240: AO356_30240 - transcriptional regulator, at 7,058,876 to 7,060,006
_30240
Position (kb) 7057
7058
7059 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 7056.690 kb on + strand at 7056.770 kb on + strand at 7056.771 kb on - strand at 7056.777 kb on - strand at 7056.789 kb on - strand at 7056.804 kb on + strand at 7056.889 kb on - strand, within AO356_30230 at 7056.923 kb on + strand, within AO356_30230 at 7056.924 kb on - strand, within AO356_30230 at 7056.924 kb on - strand, within AO356_30230 at 7056.924 kb on - strand, within AO356_30230 at 7056.925 kb on + strand, within AO356_30230 at 7056.925 kb on + strand, within AO356_30230 at 7056.925 kb on + strand, within AO356_30230 at 7056.925 kb on + strand, within AO356_30230 at 7056.925 kb on + strand, within AO356_30230 at 7056.926 kb on - strand, within AO356_30230 at 7057.004 kb on - strand, within AO356_30230 at 7057.043 kb on + strand, within AO356_30230 at 7057.043 kb on + strand, within AO356_30230 at 7057.043 kb on + strand, within AO356_30230 at 7057.043 kb on + strand, within AO356_30230 at 7057.043 kb on + strand, within AO356_30230 at 7057.044 kb on - strand, within AO356_30230 at 7057.067 kb on + strand, within AO356_30230 at 7057.067 kb on + strand, within AO356_30230 at 7057.552 kb on + strand at 7057.552 kb on + strand at 7057.552 kb on + strand at 7057.553 kb on - strand at 7057.606 kb on + strand at 7057.606 kb on + strand at 7057.606 kb on + strand at 7057.606 kb on + strand at 7057.607 kb on - strand at 7057.607 kb on - strand at 7057.607 kb on - strand at 7057.607 kb on - strand at 7057.607 kb on - strand at 7057.607 kb on - strand at 7057.607 kb on - strand at 7057.607 kb on - strand at 7057.607 kb on - strand at 7057.640 kb on + strand at 7057.654 kb on + strand at 7057.682 kb on + strand at 7057.682 kb on + strand at 7057.683 kb on - strand at 7057.683 kb on - strand at 7057.683 kb on - strand at 7057.683 kb on - strand at 7057.777 kb on + strand, within AO356_30235 at 7057.777 kb on + strand, within AO356_30235 at 7057.777 kb on + strand, within AO356_30235 at 7057.777 kb on + strand, within AO356_30235 at 7057.777 kb on + strand, within AO356_30235 at 7057.777 kb on + strand, within AO356_30235 at 7057.778 kb on - strand, within AO356_30235 at 7057.778 kb on - strand, within AO356_30235 at 7057.778 kb on - strand, within AO356_30235 at 7057.809 kb on + strand, within AO356_30235 at 7057.809 kb on + strand, within AO356_30235 at 7057.810 kb on - strand, within AO356_30235 at 7057.810 kb on - strand, within AO356_30235 at 7057.810 kb on - strand, within AO356_30235 at 7057.874 kb on - strand, within AO356_30235 at 7057.874 kb on - strand, within AO356_30235 at 7058.035 kb on - strand, within AO356_30235 at 7058.035 kb on - strand, within AO356_30235 at 7058.035 kb on - strand, within AO356_30235 at 7058.040 kb on + strand, within AO356_30235 at 7058.041 kb on - strand, within AO356_30235 at 7058.143 kb on + strand, within AO356_30235 at 7058.143 kb on + strand, within AO356_30235 at 7058.143 kb on + strand, within AO356_30235 at 7058.144 kb on - strand, within AO356_30235 at 7058.144 kb on - strand, within AO356_30235 at 7058.145 kb on + strand, within AO356_30235 at 7058.145 kb on + strand, within AO356_30235 at 7058.145 kb on + strand, within AO356_30235 at 7058.146 kb on - strand, within AO356_30235 at 7058.146 kb on - strand, within AO356_30235 at 7058.146 kb on - strand, within AO356_30235 at 7058.186 kb on + strand, within AO356_30235 at 7058.187 kb on - strand, within AO356_30235 at 7058.242 kb on + strand, within AO356_30235 at 7058.242 kb on + strand, within AO356_30235 at 7058.243 kb on - strand, within AO356_30235 at 7058.243 kb on - strand, within AO356_30235 at 7058.244 kb on + strand, within AO356_30235 at 7058.245 kb on - strand, within AO356_30235 at 7058.245 kb on - strand, within AO356_30235 at 7058.245 kb on - strand, within AO356_30235 at 7058.248 kb on + strand, within AO356_30235 at 7058.248 kb on + strand, within AO356_30235 at 7058.248 kb on + strand, within AO356_30235 at 7058.249 kb on - strand, within AO356_30235 at 7058.249 kb on - strand, within AO356_30235 at 7058.338 kb on - strand, within AO356_30235 at 7058.338 kb on - strand, within AO356_30235 at 7058.393 kb on + strand, within AO356_30235 at 7058.393 kb on + strand, within AO356_30235 at 7058.394 kb on - strand, within AO356_30235 at 7058.394 kb on - strand, within AO356_30235 at 7058.394 kb on - strand, within AO356_30235 at 7058.489 kb on + strand at 7058.489 kb on + strand at 7058.492 kb on + strand at 7058.493 kb on - strand at 7058.558 kb on + strand at 7058.600 kb on + strand at 7058.616 kb on + strand at 7058.641 kb on + strand at 7058.641 kb on + strand at 7058.730 kb on - strand at 7058.768 kb on + strand at 7058.769 kb on - strand at 7058.769 kb on - strand at 7058.769 kb on - strand at 7058.769 kb on - strand at 7058.788 kb on + strand at 7058.788 kb on + strand at 7058.788 kb on + strand at 7058.789 kb on - strand at 7058.789 kb on - strand at 7058.789 kb on - strand at 7058.789 kb on - strand at 7058.789 kb on - strand at 7058.789 kb on - strand at 7058.789 kb on - strand at 7058.789 kb on - strand at 7058.795 kb on + strand at 7058.796 kb on - strand at 7058.818 kb on + strand at 7058.819 kb on - strand at 7059.251 kb on + strand, within AO356_30240 at 7059.251 kb on + strand, within AO356_30240 at 7059.251 kb on + strand, within AO356_30240 at 7059.251 kb on + strand, within AO356_30240 at 7059.251 kb on + strand, within AO356_30240 at 7059.251 kb on + strand, within AO356_30240 at 7059.251 kb on + strand, within AO356_30240 at 7059.251 kb on + strand, within AO356_30240 at 7059.252 kb on - strand, within AO356_30240 at 7059.252 kb on - strand, within AO356_30240 at 7059.252 kb on - strand, within AO356_30240 at 7059.252 kb on - strand, within AO356_30240 at 7059.252 kb on - strand, within AO356_30240 at 7059.252 kb on - strand, within AO356_30240 at 7059.253 kb on + strand, within AO356_30240 at 7059.254 kb on - strand, within AO356_30240 at 7059.254 kb on - strand, within AO356_30240 at 7059.299 kb on + strand, within AO356_30240 at 7059.299 kb on + strand, within AO356_30240 at 7059.300 kb on - strand, within AO356_30240 at 7059.300 kb on - strand, within AO356_30240 at 7059.377 kb on + strand, within AO356_30240 at 7059.496 kb on + strand, within AO356_30240 at 7059.496 kb on + strand, within AO356_30240 at 7059.496 kb on + strand, within AO356_30240 at 7059.497 kb on - strand, within AO356_30240 at 7059.497 kb on - strand, within AO356_30240 at 7059.515 kb on + strand, within AO356_30240 at 7059.516 kb on - strand, within AO356_30240
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.0024 mg/ml remove 7,056,690 + -1.6 7,056,770 + +0.1 7,056,771 - -0.2 7,056,777 - -1.2 7,056,789 - -0.5 7,056,804 + +0.2 7,056,889 - AO356_30230 0.13 +0.5 7,056,923 + AO356_30230 0.18 -1.0 7,056,924 - AO356_30230 0.18 +0.4 7,056,924 - AO356_30230 0.18 -0.1 7,056,924 - AO356_30230 0.18 +0.4 7,056,925 + AO356_30230 0.18 -0.4 7,056,925 + AO356_30230 0.18 +0.2 7,056,925 + AO356_30230 0.18 +0.5 7,056,925 + AO356_30230 0.18 -1.4 7,056,925 + AO356_30230 0.18 +1.0 7,056,926 - AO356_30230 0.18 +0.7 7,057,004 - AO356_30230 0.30 -0.6 7,057,043 + AO356_30230 0.36 -0.5 7,057,043 + AO356_30230 0.36 -1.3 7,057,043 + AO356_30230 0.36 -0.9 7,057,043 + AO356_30230 0.36 -1.1 7,057,043 + AO356_30230 0.36 +0.2 7,057,044 - AO356_30230 0.36 -1.6 7,057,067 + AO356_30230 0.39 -1.2 7,057,067 + AO356_30230 0.39 +0.6 7,057,552 + +0.3 7,057,552 + -0.3 7,057,552 + +0.3 7,057,553 - -0.7 7,057,606 + +0.7 7,057,606 + +0.1 7,057,606 + +0.5 7,057,606 + +1.9 7,057,607 - +1.2 7,057,607 - +0.3 7,057,607 - -0.3 7,057,607 - -0.0 7,057,607 - -0.8 7,057,607 - +0.7 7,057,607 - +0.7 7,057,607 - -0.2 7,057,607 - +0.7 7,057,640 + +0.9 7,057,654 + -0.2 7,057,682 + -3.1 7,057,682 + -0.1 7,057,683 - +0.2 7,057,683 - +0.8 7,057,683 - -0.2 7,057,683 - +0.1 7,057,777 + AO356_30235 0.12 +0.8 7,057,777 + AO356_30235 0.12 -1.9 7,057,777 + AO356_30235 0.12 -2.3 7,057,777 + AO356_30235 0.12 -0.2 7,057,777 + AO356_30235 0.12 +0.3 7,057,777 + AO356_30235 0.12 -1.2 7,057,778 - AO356_30235 0.12 +0.2 7,057,778 - AO356_30235 0.12 +0.7 7,057,778 - AO356_30235 0.12 +0.4 7,057,809 + AO356_30235 0.16 -0.7 7,057,809 + AO356_30235 0.16 +1.0 7,057,810 - AO356_30235 0.16 +0.4 7,057,810 - AO356_30235 0.16 +0.8 7,057,810 - AO356_30235 0.16 +0.0 7,057,874 - AO356_30235 0.23 -0.0 7,057,874 - AO356_30235 0.23 -0.1 7,058,035 - AO356_30235 0.41 -0.0 7,058,035 - AO356_30235 0.41 -0.8 7,058,035 - AO356_30235 0.41 +0.2 7,058,040 + AO356_30235 0.42 +0.8 7,058,041 - AO356_30235 0.42 -1.0 7,058,143 + AO356_30235 0.53 -1.1 7,058,143 + AO356_30235 0.53 -1.4 7,058,143 + AO356_30235 0.53 +1.6 7,058,144 - AO356_30235 0.53 +0.4 7,058,144 - AO356_30235 0.53 +0.4 7,058,145 + AO356_30235 0.53 +0.0 7,058,145 + AO356_30235 0.53 -0.7 7,058,145 + AO356_30235 0.53 -1.3 7,058,146 - AO356_30235 0.54 +0.7 7,058,146 - AO356_30235 0.54 -0.3 7,058,146 - AO356_30235 0.54 +0.7 7,058,186 + AO356_30235 0.58 -0.2 7,058,187 - AO356_30235 0.58 +0.7 7,058,242 + AO356_30235 0.64 -1.2 7,058,242 + AO356_30235 0.64 -1.7 7,058,243 - AO356_30235 0.64 -0.3 7,058,243 - AO356_30235 0.64 +0.6 7,058,244 + AO356_30235 0.65 -1.3 7,058,245 - AO356_30235 0.65 +1.0 7,058,245 - AO356_30235 0.65 -0.0 7,058,245 - AO356_30235 0.65 +0.4 7,058,248 + AO356_30235 0.65 -0.9 7,058,248 + AO356_30235 0.65 +0.2 7,058,248 + AO356_30235 0.65 +0.3 7,058,249 - AO356_30235 0.65 -1.0 7,058,249 - AO356_30235 0.65 +0.2 7,058,338 - AO356_30235 0.75 +0.5 7,058,338 - AO356_30235 0.75 +0.1 7,058,393 + AO356_30235 0.81 -0.0 7,058,393 + AO356_30235 0.81 -0.1 7,058,394 - AO356_30235 0.81 -0.9 7,058,394 - AO356_30235 0.81 +0.9 7,058,394 - AO356_30235 0.81 +0.2 7,058,489 + -1.2 7,058,489 + +2.4 7,058,492 + +0.2 7,058,493 - +0.3 7,058,558 + -0.6 7,058,600 + +0.3 7,058,616 + +0.2 7,058,641 + -0.5 7,058,641 + +0.1 7,058,730 - +0.7 7,058,768 + -0.2 7,058,769 - +0.9 7,058,769 - -2.9 7,058,769 - +0.8 7,058,769 - +0.5 7,058,788 + +1.1 7,058,788 + -0.4 7,058,788 + -0.2 7,058,789 - -0.0 7,058,789 - -0.1 7,058,789 - +0.0 7,058,789 - -0.3 7,058,789 - +1.7 7,058,789 - +0.0 7,058,789 - -0.8 7,058,789 - -1.6 7,058,795 + +0.3 7,058,796 - +0.6 7,058,818 + -0.0 7,058,819 - +0.3 7,059,251 + AO356_30240 0.33 +2.0 7,059,251 + AO356_30240 0.33 +0.3 7,059,251 + AO356_30240 0.33 -0.9 7,059,251 + AO356_30240 0.33 +0.1 7,059,251 + AO356_30240 0.33 -0.1 7,059,251 + AO356_30240 0.33 -0.4 7,059,251 + AO356_30240 0.33 +0.4 7,059,251 + AO356_30240 0.33 +0.8 7,059,252 - AO356_30240 0.33 -0.1 7,059,252 - AO356_30240 0.33 +1.1 7,059,252 - AO356_30240 0.33 +0.4 7,059,252 - AO356_30240 0.33 +0.1 7,059,252 - AO356_30240 0.33 +0.1 7,059,252 - AO356_30240 0.33 +0.8 7,059,253 + AO356_30240 0.33 -0.8 7,059,254 - AO356_30240 0.33 +0.8 7,059,254 - AO356_30240 0.33 +0.9 7,059,299 + AO356_30240 0.37 +1.1 7,059,299 + AO356_30240 0.37 -0.3 7,059,300 - AO356_30240 0.37 -0.3 7,059,300 - AO356_30240 0.37 -0.1 7,059,377 + AO356_30240 0.44 +0.7 7,059,496 + AO356_30240 0.55 +0.3 7,059,496 + AO356_30240 0.55 +0.9 7,059,496 + AO356_30240 0.55 -0.2 7,059,497 - AO356_30240 0.55 +0.6 7,059,497 - AO356_30240 0.55 +1.0 7,059,515 + AO356_30240 0.56 +1.0 7,059,516 - AO356_30240 0.57 -0.1
Or see this region's nucleotide sequence