Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_28550
Experiment: Rifampicin 0.0024 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Rifampicin 0.0024 mg/ml |
---|---|---|---|---|---|
remove | |||||
6,635,646 | - | +0.4 | |||
6,635,854 | + | -0.9 | |||
6,635,855 | - | +1.2 | |||
6,635,855 | - | +1.7 | |||
6,636,163 | + | AO356_28550 | 0.30 | +0.4 | |
6,636,163 | + | AO356_28550 | 0.30 | -0.5 | |
6,636,439 | + | AO356_28550 | 0.53 | +1.3 | |
6,636,439 | + | AO356_28550 | 0.53 | +0.5 | |
6,636,448 | + | AO356_28550 | 0.54 | -0.1 | |
6,636,502 | + | AO356_28550 | 0.58 | +0.4 | |
6,636,532 | + | AO356_28550 | 0.61 | +0.4 | |
6,636,532 | + | AO356_28550 | 0.61 | +0.1 | |
6,636,580 | + | AO356_28550 | 0.65 | +0.1 | |
6,636,649 | + | AO356_28550 | 0.70 | +0.4 | |
6,636,692 | - | AO356_28550 | 0.74 | -0.6 | |
6,636,785 | - | AO356_28550 | 0.82 | -0.2 | |
6,636,803 | - | AO356_28550 | 0.83 | +0.6 | |
6,637,304 | - | AO356_28555 | 0.29 | +0.4 | |
6,637,320 | - | AO356_28555 | 0.31 | +1.1 | |
6,637,418 | + | AO356_28555 | 0.41 | +1.4 | |
6,637,463 | + | AO356_28555 | 0.45 | +1.0 | |
6,637,463 | + | AO356_28555 | 0.45 | -0.5 | |
6,637,464 | - | AO356_28555 | 0.45 | -0.4 | |
6,637,574 | + | AO356_28555 | 0.56 | -0.6 | |
6,637,580 | + | AO356_28555 | 0.57 | +0.1 | |
6,637,581 | - | AO356_28555 | 0.57 | +0.4 | |
6,637,706 | + | AO356_28555 | 0.69 | +0.3 |
Or see this region's nucleotide sequence