Experiment: Rifampicin 0.0024 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_28540 and AO356_28545 are separated by 78 nucleotides AO356_28545 and AO356_28550 are separated by 53 nucleotides
AO356_28540: AO356_28540 - D-mannose transporter (from data) , at 6,633,340 to 6,634,632
_28540
AO356_28545: AO356_28545 - alcohol dehydrogenase, at 6,634,711 to 6,635,742
_28545
AO356_28550: AO356_28550 - bifunctional D-altronate/D-mannonate dehydratase, at 6,635,796 to 6,637,007
_28550
Position (kb)
6634
6635
6636 Strain fitness (log2 ratio)
-2
-1
0
1 at 6633.899 kb on + strand, within AO356_28540 at 6633.935 kb on + strand, within AO356_28540 at 6633.935 kb on + strand, within AO356_28540 at 6633.936 kb on - strand, within AO356_28540 at 6633.936 kb on - strand, within AO356_28540 at 6633.936 kb on - strand, within AO356_28540 at 6633.936 kb on - strand, within AO356_28540 at 6633.939 kb on + strand, within AO356_28540 at 6633.940 kb on - strand, within AO356_28540 at 6633.941 kb on + strand, within AO356_28540 at 6634.134 kb on + strand, within AO356_28540 at 6634.134 kb on + strand, within AO356_28540 at 6634.157 kb on + strand, within AO356_28540 at 6634.157 kb on + strand, within AO356_28540 at 6634.260 kb on - strand, within AO356_28540 at 6634.467 kb on - strand, within AO356_28540 at 6634.572 kb on - strand at 6634.615 kb on - strand at 6635.646 kb on - strand at 6635.854 kb on + strand at 6635.855 kb on - strand at 6635.855 kb on - strand at 6636.163 kb on + strand, within AO356_28550 at 6636.163 kb on + strand, within AO356_28550 at 6636.439 kb on + strand, within AO356_28550 at 6636.439 kb on + strand, within AO356_28550 at 6636.448 kb on + strand, within AO356_28550 at 6636.502 kb on + strand, within AO356_28550 at 6636.532 kb on + strand, within AO356_28550 at 6636.532 kb on + strand, within AO356_28550 at 6636.580 kb on + strand, within AO356_28550 at 6636.649 kb on + strand, within AO356_28550 at 6636.692 kb on - strand, within AO356_28550
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.0024 mg/ml remove 6,633,899 + AO356_28540 0.43 -0.9 6,633,935 + AO356_28540 0.46 +0.2 6,633,935 + AO356_28540 0.46 -0.1 6,633,936 - AO356_28540 0.46 -0.1 6,633,936 - AO356_28540 0.46 -1.1 6,633,936 - AO356_28540 0.46 -0.6 6,633,936 - AO356_28540 0.46 +1.3 6,633,939 + AO356_28540 0.46 +0.0 6,633,940 - AO356_28540 0.46 +1.2 6,633,941 + AO356_28540 0.46 -0.4 6,634,134 + AO356_28540 0.61 -1.6 6,634,134 + AO356_28540 0.61 +0.5 6,634,157 + AO356_28540 0.63 -1.8 6,634,157 + AO356_28540 0.63 +0.0 6,634,260 - AO356_28540 0.71 +0.6 6,634,467 - AO356_28540 0.87 +0.1 6,634,572 - -0.5 6,634,615 - +0.2 6,635,646 - +0.4 6,635,854 + -0.9 6,635,855 - +1.2 6,635,855 - +1.7 6,636,163 + AO356_28550 0.30 +0.4 6,636,163 + AO356_28550 0.30 -0.5 6,636,439 + AO356_28550 0.53 +1.3 6,636,439 + AO356_28550 0.53 +0.5 6,636,448 + AO356_28550 0.54 -0.1 6,636,502 + AO356_28550 0.58 +0.4 6,636,532 + AO356_28550 0.61 +0.4 6,636,532 + AO356_28550 0.61 +0.1 6,636,580 + AO356_28550 0.65 +0.1 6,636,649 + AO356_28550 0.70 +0.4 6,636,692 - AO356_28550 0.74 -0.6
Or see this region's nucleotide sequence